Constitutive Photomorphogensis Protein1 (COP1) Mediated P53 Pathway and Its Oncogenic Role
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Database of Cattle Candidate Genes and Genetic Markers for Milk Production and Mastitis
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by PubMed Central doi:10.1111/j.1365-2052.2009.01921.x Database of cattle candidate genes and genetic markers for milk production and mastitis J. Ogorevc*, T. Kunej*, A. Razpet and P. Dovc Department of Animal Science, Biotechnical Faculty, University of Ljubljana, Domzale, Slovenia Summary A cattle database of candidate genes and genetic markers for milk production and mastitis has been developed to provide an integrated research tool incorporating different types of information supporting a genomic approach to study lactation, udder development and health. The database contains 943 genes and genetic markers involved in mammary gland development and function, representing candidates for further functional studies. The candidate loci were drawn on a genetic map to reveal positional overlaps. For identification of candidate loci, data from seven different research approaches were exploited: (i) gene knockouts or transgenes in mice that result in specific phenotypes associated with mam- mary gland (143 loci); (ii) cattle QTL for milk production (344) and mastitis related traits (71); (iii) loci with sequence variations that show specific allele-phenotype interactions associated with milk production (24) or mastitis (10) in cattle; (iv) genes with expression profiles associated with milk production (207) or mastitis (107) in cattle or mouse; (v) cattle milk protein genes that exist in different genetic variants (9); (vi) miRNAs expressed in bovine mammary gland (32) and (vii) epigenetically regulated cattle genes associated with mammary gland function (1). Fourty-four genes found by multiple independent analyses were suggested as the most promising candidates and were further in silico analysed for expression levels in lactating mammary gland, genetic variability and top biological func- tions in functional networks. -
The Prognosis Analysis of RFWD2 Inhibiting the Expression of ETV1 in Colorectal Cancer
521 Original Article The prognosis analysis of RFWD2 inhibiting the expression of ETV1 in colorectal cancer Wei Huang1#, Xiumei Tian2,3#, Xiaoying Guan2,3 1Department of Pathology, The Affiliated Shunde Hospital of Guangzhou Medical University, Foshan 528315, China; 2Key Laboratory of Oral Medicine, Guangzhou Institute of Oral Disease, Affiliated Stomatology Hospital of Guangzhou Medical University, Guangzhou 510500, China; 3Department of Biomedical Engineering, Basic Medicine School, Guangzhou Medical University, Guangzhou 511436, China Contributions: (I) Conception and design: W Huang, X Guan; (II) Administrative support: Guangzhou Medical University; (III) Provision of study materials or patients: W Huang; (IV) Collection and assembly of data: X Tian; (V) Data analysis and interpretation: W Huang, X Guan; (VI) Manuscript writing: All authors; (VII) Final approval of manuscript: All authors. #These authors contributed equally to this work. Correspondence to: Xiaoying Guan. Key Laboratory of Oral Medicine, Guangzhou Institute of Oral Disease, Affiliated Stomatology Hospital of Guangzhou Medical University, Huangsha Avenue 39#, Liwan District, Guangzhou 510500, China; Department of Biomedical Engineering, Basic Medicine School, Guangzhou Medical University, Xinzao, Panyu District, Guangzhou 511436, China. Email: [email protected]. Background: The poor prognosis is partly due to the lack of efficient methods for early diagnosis on colorectal cancer (CRC). Methods: Bioinformatic analysis and Immunohistochemical analysis were used to evaluate E3 ubiquitin ligase Ring finger and WD domain 2 RFWD2( ) and ETS variant 1 (ETV1) mRNA and protein expression levels. Results: The abundance of RFWD2 and ETV1 proteins from 76 CRC patients were examined. The relationship between their expression levels and clinic pathological parameters including prognostic significances were also detected. -
Effects of B-K-Casein (CSN2-CSN3) Haplotypes and B-Lactoglobulin
J. Dairy Sci. 93 :3797–3808 doi: 10.3168/jds.2009-2778 © American Dairy Science Association®, 2010 . Effects of β-κ-casein (CSN2-CSN3) haplotypes and β-lactoglobulin (BLG) genotypes on milk production traits and detailed protein composition of individual milk of Simmental cows 1 V. Bonfatti ,* G. Di Martino ,* A. Cecchinato ,* D. Vicario ,† and P. Carnier * * Department of Animal Science, University of Padova, viale dell’Università 16, 35020, Legnaro, Padova, Italy † Italian Simmental Cattle Breeders Association, via Nievo 19, 33100, Udine, Italy ABSTRACT and αS1-CN. Estimated additive genetic variance for investigated traits ranged from 14 to 39% of total vari- The aim of this study was to investigate the effects ance. Increasing the frequency of specific genotypes or of CSN2-CSN3 (β-κ-casein) haplotypes and BLG haplotypes by selective breeding might be an effective (β-lactoglobulin) genotypes on milk production traits, way to change milk protein composition. content of protein fractions, and detailed protein compo- Key words: casein haplotypes , BLG genotype , milk sition of individual milk of Simmental cows. Content of protein composition , Simmental the major protein fractions was measured by reversed- phase HPLC in individual milk samples of 2,167 cows. INTRODUCTION Protein composition was measured as percentage of each casein (CN) fraction to total CN and as percent- Most research concerning milk protein polymor- age of β-lactoglobulin (β-LG) to total whey protein. phisms has focused on the associations of CSN3 (κ-CN) Genotypes at CSN2, CSN3, and BLG were ascertained and BLG (β-LG) polymorphisms with milk production by reversed-phase HPLC, and CSN2-CSN3 haplotype traits, coagulation time, curd firmness, and cheese yield. -
Genome Variants Associated with RNA Splicing Variation in Bovine Are
bioRxiv preprint doi: https://doi.org/10.1101/220251; this version posted April 5, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Genome variants associated with RNA splicing variation in bovine are 2 extensively shared between tissues 3 Ruidong Xiang1,2,*, Ben J. Hayes2,3, Christy J. Vander Jagt2, Iona M. MacLeod2, Majid 4 Khansefid2, Phil J. Bowman2,6, Zehu Yuan2, Claire P. Prowse-Wilkins2, Coralie M. Reich2, 5 Brett A. Mason2, Josie B. Garner4, Leah C. Marett4, Yizhou Chen5, Sunduimijid Bolormaa2, 6 Hans D. Daetwyler2,6, Amanda J. Chamberlain2 and Michael E. Goddard1,2 7 1Faculty of Veterinary & Agricultural Science, University of Melbourne, Parkville, VIC 3010, 8 Australia. 2Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC 3083, 9 Australia. 3Queensland Alliance for Agriculture and Food Innovation, Centre for Animal 10 Science, University of Queensland, St. Lucia, QLD 4067, Australia. 4Agriculture Victoria, 11 Dairy Production Science, Ellinbank, VIC, 3821, Australia. 5Elizabeth Macarthur 12 Agricultural Institute, New South Wales Department of Primary Industries, Camden, NSW 13 2570, Australia. 6School of Applied Systems Biology, La Trobe University, Bundoora, VIC 14 3083, Australia. 15 *Corresponding author: Dr. Ruidong Xiang; 16 Ruidong Xiang: [email protected]; 17 Ben J. Hayes: [email protected]; 18 Christy J. Vander Jagt: [email protected]; 19 Iona M. MacLeod: [email protected]; 20 Majid Khansefid: [email protected]; 21 Phil J. -
Cellular Senescence Bypass Screen Identifies New Putative Tumor
Oncogene (2008) 27, 1961–1970 & 2008 Nature Publishing Group All rights reserved 0950-9232/08 $30.00 www.nature.com/onc ORIGINAL ARTICLE Cellular senescence bypass screen identifies new putative tumor suppressor genes JFM Leal1, J Fominaya1, A Casco´ n2, MV Guijarro1, C Blanco-Aparicio1, M Lleonart3, ME Castro1, SRamon y Cajal 3, M Robledo2, DH Beach4 and A Carnero1 1Experimental Therapeutics Programme, Centro Nacional de Investigaciones Oncolo´gicas (CNIO), Madrid, Spain; 2Molecular Pathology Programme, Centro Nacional de Investigaciones Oncolo´gicas (CNIO), Madrid, Spain; 3Departamento de Patologı´a, Hospital Vall d’Hebron, Barcelona, Spain and 4Institute for Cell and Molecular Sciences, Center for Cutaneous Biology, London, UK Senescence is a mechanism that limits cellular lifespan and Introduction constitutes a barrier against cellular immortalization. To identify new senescence regulatory genes that might play a Replicative senescence is characterized by a progressive role in tumorigenesis, we have designed and performed a loss of proliferative potential with the increase of popu- large-scale antisense-based genetic screen in primary lation doublings, resulting in a permanent and irrever- mouse embryo fibroblasts (MEFs). Out of this screen, sible cell-cycle arrest. Although the process of senescence we have identified five different genes through which loss occurs both in vitro and in vivo (Dimri et al., 1995; of function partially bypasses senescence. These genes Schmitt et al., 2002; Shay and Roninson, 2004; Braig belong to very different biochemical families: csn2 et al., 2005; Collado et al., 2005; Michaloglou et al., (component of the Cop9 signalosome), aldose reductase 2005), the transition to the senescent phenotype is (a metabolic enzyme) and brf1 (subunit of the RNA commonly studied in culture where a cell population polymerase II complex), S-adenosyl homocysteine hydro- can be grown and monitored. -
A Systems-Genetics Analyses of Complex Phenotypes
A systems-genetics analyses of complex phenotypes A thesis submitted to the University of Manchester for the degree of Doctor of Philosophy in the Faculty of Life Sciences 2015 David Ashbrook Table of contents Table of contents Table of contents ............................................................................................... 1 Tables and figures ........................................................................................... 10 General abstract ............................................................................................... 14 Declaration ....................................................................................................... 15 Copyright statement ........................................................................................ 15 Acknowledgements.......................................................................................... 16 Chapter 1: General introduction ...................................................................... 17 1.1 Overview................................................................................................... 18 1.2 Linkage, association and gene annotations .............................................. 20 1.3 ‘Big data’ and ‘omics’ ................................................................................ 22 1.4 Systems-genetics ..................................................................................... 24 1.5 Recombinant inbred (RI) lines and the BXD .............................................. 25 Figure 1.1: -
NRF1) Coordinates Changes in the Transcriptional and Chromatin Landscape Affecting Development and Progression of Invasive Breast Cancer
Florida International University FIU Digital Commons FIU Electronic Theses and Dissertations University Graduate School 11-7-2018 Decipher Mechanisms by which Nuclear Respiratory Factor One (NRF1) Coordinates Changes in the Transcriptional and Chromatin Landscape Affecting Development and Progression of Invasive Breast Cancer Jairo Ramos [email protected] Follow this and additional works at: https://digitalcommons.fiu.edu/etd Part of the Clinical Epidemiology Commons Recommended Citation Ramos, Jairo, "Decipher Mechanisms by which Nuclear Respiratory Factor One (NRF1) Coordinates Changes in the Transcriptional and Chromatin Landscape Affecting Development and Progression of Invasive Breast Cancer" (2018). FIU Electronic Theses and Dissertations. 3872. https://digitalcommons.fiu.edu/etd/3872 This work is brought to you for free and open access by the University Graduate School at FIU Digital Commons. It has been accepted for inclusion in FIU Electronic Theses and Dissertations by an authorized administrator of FIU Digital Commons. For more information, please contact [email protected]. FLORIDA INTERNATIONAL UNIVERSITY Miami, Florida DECIPHER MECHANISMS BY WHICH NUCLEAR RESPIRATORY FACTOR ONE (NRF1) COORDINATES CHANGES IN THE TRANSCRIPTIONAL AND CHROMATIN LANDSCAPE AFFECTING DEVELOPMENT AND PROGRESSION OF INVASIVE BREAST CANCER A dissertation submitted in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY in PUBLIC HEALTH by Jairo Ramos 2018 To: Dean Tomás R. Guilarte Robert Stempel College of Public Health and Social Work This dissertation, Written by Jairo Ramos, and entitled Decipher Mechanisms by Which Nuclear Respiratory Factor One (NRF1) Coordinates Changes in the Transcriptional and Chromatin Landscape Affecting Development and Progression of Invasive Breast Cancer, having been approved in respect to style and intellectual content, is referred to you for judgment. -
Rabbit Anti-COPS3/FITC Conjugated Antibody-SL23085R-FITC
SunLong Biotech Co.,LTD Tel: 0086-571- 56623320 Fax:0086-571- 56623318 E-mail:[email protected] www.sunlongbiotech.com Rabbit Anti-COPS3/FITC Conjugated antibody SL23085R-FITC Product Name: Anti-COPS3/FITC Chinese Name: FITC标记的COP9信号复合体亚基3抗体 COP9 Signalosome Complex Subunit 3; CSN10; JAB1 Containing Signalosome Alias: Subunit 3; SGN3; Signalosome Subunit 3; CSN3_HUMAN. Organism Species: Rabbit Clonality: Polyclonal React Species: ICC=1:50-200IF=1:50-200 Applications: not yet tested in other applications. optimal dilutions/concentrations should be determined by the end user. Molecular weight: 48kDa Form: Lyophilized or Liquid Concentration: 2mg/1ml immunogen: KLH conjugated synthetic peptide derived from human COPS3 Lsotype: IgG Purification: affinity purified by Protein A Storage Buffer: 0.01M TBS(pH7.4) with 1% BSA, 0.03% Proclin300 and 50% Glycerol. Storewww.sunlongbiotech.com at -20 °C for one year. Avoid repeated freeze/thaw cycles. The lyophilized antibody is stable at room temperature for at least one month and for greater than a year Storage: when kept at -20°C. When reconstituted in sterile pH 7.4 0.01M PBS or diluent of antibody the antibody is stable for at least two weeks at 2-4 °C. background: The protein encoded by this gene possesses kinase activity that phosphorylates regulators involved in signal transduction. It phosphorylates I kappa-Balpha, p105, and c-Jun. It acts as a docking site for complex-mediated phosphorylation. The gene is Product Detail: located within the Smith-Magenis syndrome region on chromosome 17. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2010]. -
A Study of Alterations in DNA Epigenetic Modifications (5Mc and 5Hmc) and Gene Expression Influenced by Simulated Microgravity I
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Digital Repository @ Iowa State University Genome Informatics Facility Publications Genome Informatics Facility 1-28-2016 A Study of Alterations in DNA Epigenetic Modifications (5mC and 5hmC) and Gene Expression Influenced by Simulated Microgravity in Human Lymphoblastoid Cells Basudev Chowdhury Purdue University Arun S. Seetharam Iowa State University, [email protected] Zhiping Wang Indiana University School of Medicine Yunlong Liu Indiana University School of Medicine Amy C. Lossie Purdue University See next page for additional authors Follow this and additional works at: https://lib.dr.iastate.edu/genomeinformatics_pubs Part of the Bioinformatics Commons, Genetics Commons, and the Genomics Commons Recommended Citation Chowdhury, Basudev; Seetharam, Arun S.; Wang, Zhiping; Liu, Yunlong; Lossie, Amy C.; Thimmapuram, Jyothi; and Irudayaraj, Joseph, "A Study of Alterations in DNA Epigenetic Modifications (5mC and 5hmC) and Gene Expression Influenced by Simulated Microgravity in Human Lymphoblastoid Cells" (2016). Genome Informatics Facility Publications. 4. https://lib.dr.iastate.edu/genomeinformatics_pubs/4 This Article is brought to you for free and open access by the Genome Informatics Facility at Iowa State University Digital Repository. It has been accepted for inclusion in Genome Informatics Facility Publications by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. A Study of Alterations in DNA Epigenetic Modifications (5mC and 5hmC) and Gene Expression Influenced by Simulated Microgravity in Human Lymphoblastoid Cells Abstract Cells alter their gene expression in response to exposure to various environmental changes. Epigenetic mechanisms such as DNA methylation are believed to regulate the alterations in gene expression patterns. -
DMC1 Protein-Protein Interactions Are Directly Linked to Meiosis Homeostasis and Fertility
Open Access Austin Cell Biology Research Article DMC1 Protein-Protein Interactions are Directly Linked to Meiosis Homeostasis and Fertility Silva KSF* Biological Sciences Institute, Federal University of Goiás, Abstract Brazil Infertility is a disorder of the reproductive system. Couples are infertile *Corresponding author: Kleber Santiago Freitas e when they are unable to conceive children by a functional pregnancy after one Silva, Biological Sciences Institute, Federal University of year of regular and unprotected sexual intercourse. About 15% of couples in Goiás, Brazil the reproductive age around the world cannot conceive children and around 30% of all cases of infertility are idiopathic, with unknown underlying causes. Received: September 10, 2018; Accepted: October 23, Protein-protein interactions have not yet been extensively explored regarding 2018; Published: October 30, 2018 those underlying causes of infertility and one can assume that PPIs could be directly related to some of the idiopathic cases of infertility. Meiosis is a cell division process governed by a multitude of proteins and multiprotein complexes that regulate DNA double strand breaks, homologous recombination, synapsis [1], mismatch repair, chromosome maintenance and synaptonemal complex. PPI studies have been used in a variety of ways in other to shed some light on unknown molecular biologic processes that take place in the microenvironment of cells and may lead to diseases. PPI approaches have been used to identify the dynamic of biological systems and diseases onset, progression, diagnosis and treatment. Here, we present bioinformatics and in silico analysis of DMC1 and interacting protein partners that play important roles in meiosis homeostasis and consequently in human fertility. -
Produktinformation
Produktinformation Diagnostik & molekulare Diagnostik Laborgeräte & Service Zellkultur & Verbrauchsmaterial Forschungsprodukte & Biochemikalien Weitere Information auf den folgenden Seiten! See the following pages for more information! Lieferung & Zahlungsart Lieferung: frei Haus Bestellung auf Rechnung SZABO-SCANDIC Lieferung: € 10,- HandelsgmbH & Co KG Erstbestellung Vorauskassa Quellenstraße 110, A-1100 Wien T. +43(0)1 489 3961-0 Zuschläge F. +43(0)1 489 3961-7 [email protected] • Mindermengenzuschlag www.szabo-scandic.com • Trockeneiszuschlag • Gefahrgutzuschlag linkedin.com/company/szaboscandic • Expressversand facebook.com/szaboscandic COPS3 polyclonal antibody (A01) Catalog # : H00008533-A01 規格 : [ 50 uL ] List All Specification Application Image Product Mouse polyclonal antibody raised against a partial recombinant COPS3. Western Blot (Cell lysate) Description: Immunogen: COPS3 (NP_003644, 324 a.a. ~ 422 a.a) partial recombinant protein with GST tag. Sequence: SRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAML HNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPSSY enlarge Western Blot (Cell lysate) Host: Mouse Reactivity: Human, Mouse, Rat Quality Control Antibody Reactive Against Recombinant Protein. Testing: enlarge Western Blot (Cell lysate) enlarge Western Blot (Cell lysate) Western Blot detection against Immunogen (37 KDa) . Storage Buffer: 50 % glycerol Storage Store at -20°C or lower. Aliquot to avoid repeated freezing and thawing. Instruction: enlarge MSDS: Download Western Blot (Recombinant protein) Datasheet: Download ELISA Applications Western Blot (Cell lysate) Page 1 of 3 2016/5/22 COPS3 polyclonal antibody (A01), Lot # 060113JC01. Western Blot analysis of COPS3 expression in PC-12. Protocol Download Western Blot (Cell lysate) COPS3 polyclonal antibody (A01), Lot # 060113JC01 Western Blot analysis of COPS3 expression in Hela S3 NE ( Cat # L013V3 ). Protocol Download Western Blot (Cell lysate) COPS3 polyclonal antibody (A01), Lot # 060113JC01. Western Blot analysis of COPS3 expression in Raw 264.7. -
Extensive Intragenic Recombination and Patterns of Linkage Disequilibrium at the CSN3 Locus in European Rabbit
Genet. Sel. Evol. 39 (2007) 341–352 341 c INRA, EDP Sciences, 2007 DOI: 10.1051/gse:2007007 Original article Extensive intragenic recombination and patterns of linkage disequilibrium at the CSN3 locus in European rabbit Miguel C∗, Nuno F CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Campus Agrário de Vairão, 4485-661 Vairão, and Departamento de Zoologia e Antropologia, Faculdade de Ciências da Universidade do Porto, 4099-002 Porto, Portugal (Received 30 August 2006; accepted 20 November 2006) Abstract – Kappa-casein (CSN3) plays an important role in stabilising the Ca-sensitive caseins in the micelle. The European rabbit (Oryctolagus cuniculus) CSN3 has previously been shown to possess two alleles (A and B), which differ deeply in their intronic regions (indels of 100 and 1550 nucleotides in introns 1 and 4, respectively). Furthermore, a correlation between several reproductive performance traits and the different alleles was described. However, all these data were exclusively collected in rabbit domestic breeds, preventing a deeper understanding of the extensive polymorphism observed in the CSN3 gene. Additionally, the techniques available for the typing of both indel polymorphisms were until now not suitable for large-scale studies. In this report, we describe a simple, PCR-based typing method to distinguish rabbit CSN3 alleles. We analyse both ancient wild rabbit populations from the Iberian Peninsula and France, and the more recently derived English wild rabbits and domestic stocks. A new allele (C) showing another major indel (250 bp) in intron 1 was found, but exclusively detected in Iberian wild rabbits. In addition, our survey revealed the occurrence of new haplotypes in wild populations, suggesting that intragenic recombination is important in creating genetic diversity at this locus.