Biomarker Status of the Human Equilibrative Nucleoside
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Microrna Pharmacoepigenetics: Posttranscriptional Regulation Mechanisms Behind Variable Drug Disposition and Strategy to Develop More Effective Therapy
1521-009X/44/3/308–319$25.00 http://dx.doi.org/10.1124/dmd.115.067470 DRUG METABOLISM AND DISPOSITION Drug Metab Dispos 44:308–319, March 2016 Copyright ª 2016 by The American Society for Pharmacology and Experimental Therapeutics Minireview MicroRNA Pharmacoepigenetics: Posttranscriptional Regulation Mechanisms behind Variable Drug Disposition and Strategy to Develop More Effective Therapy Ai-Ming Yu, Ye Tian, Mei-Juan Tu, Pui Yan Ho, and Joseph L. Jilek Department of Biochemistry & Molecular Medicine, University of California Davis School of Medicine, Sacramento, California Received September 30, 2015; accepted November 12, 2015 Downloaded from ABSTRACT Knowledge of drug absorption, distribution, metabolism, and excre- we review the advances in miRNA pharmacoepigenetics including tion (ADME) or pharmacokinetics properties is essential for drug the mechanistic actions of miRNAs in the modulation of Phase I and development and safe use of medicine. Varied or altered ADME may II drug-metabolizing enzymes, efflux and uptake transporters, and lead to a loss of efficacy or adverse drug effects. Understanding the xenobiotic receptors or transcription factors after briefly introducing causes of variations in drug disposition and response has proven the characteristics of miRNA-mediated posttranscriptional gene dmd.aspetjournals.org critical for the practice of personalized or precision medicine. The regulation. Consequently, miRNAs may have significant influence rise of noncoding microRNA (miRNA) pharmacoepigenetics and on drug disposition and response. Therefore, research on miRNA pharmacoepigenomics has come with accumulating evidence sup- pharmacoepigenetics shall not only improve mechanistic under- porting the role of miRNAs in the modulation of ADME gene standing of variations in pharmacotherapy but also provide novel expression and then drug disposition and response. -
The Opioid Epidemic: Crisis and Solutions
PA58CH09-Skolnick ARI 18 November 2017 9:40 Annual Review of Pharmacology and Toxicology The Opioid Epidemic: Crisis and Solutions Phil Skolnick Opiant Pharmaceuticals, Santa Monica, California 09401, USA; email: [email protected] Annu. Rev. Pharmacol. Toxicol. 2018. 58:143–59 Keywords First published as a Review in Advance on heroin, overdose, naloxone, vaccines, medication-assisted therapies, pain October 2, 2017 The Annual Review of Pharmacology and Toxicology Abstract by [email protected] on 01/16/18. For personal use only. is online at pharmtox.annualreviews.org The widespread abuse of prescription opioids and a dramatic increase in https://doi.org/10.1146/annurev-pharmtox- the availability of illicit opioids have created what is commonly referred to 010617-052534 as the opioid epidemic. The magnitude of this epidemic is startling: About Copyright c 2018 by Annual Reviews. 4% of the adult US population misuses prescription opioids, and in 2015, Annu. Rev. Pharmacol. Toxicol. 2018.58:143-159. Downloaded from www.annualreviews.org All rights reserved more than 33,000 deaths were attributable to overdose with licit and illicit opioids. Increasing the availability of medication-assisted treatments (such as buprenorphine and naltrexone), the use of abuse-deterrent formulations, and ANNUAL REVIEWS Further the adoption of US Centers for Disease Control and Prevention prescribing Click here to view this article's guidelines all constitute short-term approaches to quell this epidemic. How- online features: • Download figures as PPT slides ever, with more than 125 million Americans suffering from either acute or • Navigate linked references • Download citations chronic pain, the development of effective alternatives to opioids, enabled at • Explore related articles • Search keywords least in part by a fuller understanding of the neurobiological bases of pain, offers the best long-term solution for controlling and ultimately eradicating this epidemic. -
Towards the Elucidation of Orphan Lysosomal Transporters Quentin Verdon
Towards the Elucidation of Orphan Lysosomal Transporters Quentin Verdon To cite this version: Quentin Verdon. Towards the Elucidation of Orphan Lysosomal Transporters. Cancer. Université Paris Saclay (COmUE), 2016. English. NNT : 2016SACLS144. tel-01827233 HAL Id: tel-01827233 https://tel.archives-ouvertes.fr/tel-01827233 Submitted on 2 Jul 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. NNT : 2016SACLS144 THESE DE DOCTORAT DE L’UNIVERSITE PARIS-SACLAY PREPAREE A L’UNIVERSITE PARIS-SUD ECOLE DOCTORALE N°568 BIOSIGNE | Signalisations et réseaux intégratifs en biologie Spécialité de doctorat : aspects moléculaires et cellulaires de la biologie Par Mr Quentin Verdon Towards the elucidation of orphan lysosomal transporters: several shots on target and one goal Thèse présentée et soutenue à Paris le 29/06/2016 » : Composition du Jury : Mr Le Maire Marc Professeur, Université Paris-Sud Président Mr Birman Serge Directeur de recherche, CNRS Rapporteur Mr Murray James Assistant professor, Trinity college Dublin Rapporteur Mr Goud Bruno Directeur de recherche, CNRS Examinateur Mr Gasnier Bruno Directeur de recherche, CNRS Directeur de thèse Mme Sagné Corinne Chargée de recherche, INSERM Co-directeur de thèse Table of contents Remerciements (acknowledgements) 6 Abbreviations 7 Abstracts 10 Introduction 12 1 Physiology of lysosomes 12 1.1 Discovery and generalities 12 1.2 Degradative function 13 1.3. -
Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase -
Structure-Activity Relationship and Mechanistic Studies on The
University of Tennessee Health Science Center UTHSC Digital Commons Theses and Dissertations (ETD) College of Graduate Health Sciences 12-2008 Structure-Activity Relationship and Mechanistic Studies on the Chemopreventive Activity of Dipyridamole and Its Analogues Ja’Wanda Shavon Grant University of Tennessee Health Science Center Follow this and additional works at: https://dc.uthsc.edu/dissertations Part of the Pharmacy and Pharmaceutical Sciences Commons Recommended Citation Grant, Ja’Wanda Shavon , "Structure-Activity Relationship and Mechanistic Studies on the Chemopreventive Activity of Dipyridamole and Its Analogues" (2008). Theses and Dissertations (ETD). Paper 100. http://dx.doi.org/10.21007/ etd.cghs.2008.0114. This Dissertation is brought to you for free and open access by the College of Graduate Health Sciences at UTHSC Digital Commons. It has been accepted for inclusion in Theses and Dissertations (ETD) by an authorized administrator of UTHSC Digital Commons. For more information, please contact [email protected]. Structure-Activity Relationship and Mechanistic Studies on the Chemopreventive Activity of Dipyridamole and Its Analogues Document Type Dissertation Degree Name Doctor of Philosophy (PhD) Program Pharmaceutical Sciences Research Advisor John K. Buolamwini, Ph.D. Committee Richard E. Lee, Ph.D. Duane Miller, Ph.D. David Nelson, Ph.D. Jie Zheng, Ph.D. DOI 10.21007/etd.cghs.2008.0114 This dissertation is available at UTHSC Digital Commons: https://dc.uthsc.edu/dissertations/100 STRUCTURE-ACTIVITY RELATIONSHIP AND -
Nucleoside Transporter Expression and Function in Cultured Mouse Astrocytes
GLIA 52:25–35 (2005) Nucleoside Transporter Expression and Function in Cultured Mouse Astrocytes LIANG PENG,1 RONG HUANG,2 ALBERT C.H. YU,1 KING Y. FUNG,1 MICHEL P. RATHBONE,3 AND LEIF HERTZ1,2* 1Hong Kong DNA Chips, Ltd., Kowloon, Hong Kong, China 2Department of Pharmacology, University of Saskatchewan, Saskatoon, Saskatchewan, Canada 3Department of Medicine, McMaster University, Hamilton, Ontario, Canada KEY WORDS and play important roles in energy homeostasis and sig- adenosine; CNT2; ENT1; ENT2; guanosine; thymidine naling; (3) astrocytes synthesize guanine nucleotides (Pelled et al., 1999); (4) ATP is released from astrocytes during the propagation of Ca21 waves (Guthrie et al., ABSTRACT 1999) and degraded extracellularly; and (5) adenosine Uptake of purine and pyrimidine nucleosides in astrocytes is and guanosine function as neuromodulators, acting on P1 important for several reasons: (1) uptake of nucleosides con- tributes to nucleic acid synthesis; (2) astrocytes synthesize purinergic receptors of different subtypes in neurons and/ AMP, ADP, and ATP from adenosine and GTP from guano- or astrocytes (van Calker and Hamprecht, 1979; Kim sine; and (3) adenosine and guanosine function as neuromo- et al., 1991; Rathbone et al., 1999; Ciccarelli et al., 2001; dulators, whose effects are partly terminated by cellular Chen et al., 2001; Di Iorio et al., 2004; Wittendorp et al., uptake. It has previously been shown that adenosine is 2004), and cellular uptake contributes to the termination rapidly accumulated by active uptake in astrocytes (Hertz of their neuromodulator effects. However, except for ade- and Matz, Neurochem Res 14:755–760, 1989), but the ratio nosine (Hertz, 1978; Thampy and Barnes, 1983; Bender between active uptake and metabolism-driven uptake of ade- and Hertz, 1986; Hosli€ and Hosli,€ 1988; Matz and Hertz, nosine is unknown, as are uptake characteristics for guano- 1990; Bender et al., 1994; Othman et al., 2002), only little sine. -
Transporters
Alexander, S. P. H., Kelly, E., Mathie, A., Peters, J. A., Veale, E. L., Armstrong, J. F., Faccenda, E., Harding, S. D., Pawson, A. J., Sharman, J. L., Southan, C., Davies, J. A., & CGTP Collaborators (2019). The Concise Guide to Pharmacology 2019/20: Transporters. British Journal of Pharmacology, 176(S1), S397-S493. https://doi.org/10.1111/bph.14753 Publisher's PDF, also known as Version of record License (if available): CC BY Link to published version (if available): 10.1111/bph.14753 Link to publication record in Explore Bristol Research PDF-document This is the final published version of the article (version of record). It first appeared online via Wiley at https://bpspubs.onlinelibrary.wiley.com/doi/full/10.1111/bph.14753. Please refer to any applicable terms of use of the publisher. University of Bristol - Explore Bristol Research General rights This document is made available in accordance with publisher policies. Please cite only the published version using the reference above. Full terms of use are available: http://www.bristol.ac.uk/red/research-policy/pure/user-guides/ebr-terms/ S.P.H. Alexander et al. The Concise Guide to PHARMACOLOGY 2019/20: Transporters. British Journal of Pharmacology (2019) 176, S397–S493 THE CONCISE GUIDE TO PHARMACOLOGY 2019/20: Transporters Stephen PH Alexander1 , Eamonn Kelly2, Alistair Mathie3 ,JohnAPeters4 , Emma L Veale3 , Jane F Armstrong5 , Elena Faccenda5 ,SimonDHarding5 ,AdamJPawson5 , Joanna L Sharman5 , Christopher Southan5 , Jamie A Davies5 and CGTP Collaborators 1School of Life Sciences, -
Multiple Computational Approaches for Predicting Drug Interactions with Human
DMD Fast Forward. Published on May 12, 2021 as DOI: 10.1124/dmd.121.000423 This article has not been copyedited and formatted. The final version may differ from this version. DMD-AR-2021-000423 1 Title Page Multiple Computational Approaches for Predicting Drug Interactions with Human Equilibrative Nucleoside Transporter 1 Siennah R. Miller, Thomas R. Lane, Kimberley M. Zorn, Sean Ekins, Stephen H. Wright, Nathan J. Cherrington Downloaded from College of Pharmacy, Department of Pharmacology & Toxicology, University of Arizona, Tucson AZ, USA (SRM, NJC) dmd.aspetjournals.org College of Medicine, Department of Physiology, University of Arizona, Tucson, AZ, USA (SHW) Collaborations Pharmaceuticals, Inc., Raleigh, NC, USA (KMZ, TRL, SE) Corresponding Authors: at ASPET Journals on October 2, 2021 Nathan J. Cherrington 1295 N Martin Ave, Tucson, AZ, 85721 (520)-626-0219, [email protected] Stephen H. Wright 1501 N Campbell Ave, Tucson, AZ, 85724 (520)-626-4253, [email protected] DMD Fast Forward. Published on May 12, 2021 as DOI: 10.1124/dmd.121.000423 This article has not been copyedited and formatted. The final version may differ from this version. DMD-AR-2021-000423 2 Running title page Running Title: Computational Approaches to Predict ENT1-Drug Interactions Total pages: 41 Figures: 8 Tables: 4 Abstract: 225 words Introduction: 688 words Downloaded from Discussion: 876 dmd.aspetjournals.org Abbreviations: BTB: Blood-testis barrier ENT: Equilibrative nucleoside transporter at ASPET Journals on October 2, 2021 NBMPR: 6-S-[(4-Nitrophenyl)methyl]-6-thioinosine QSAR: Quantitative structure-activity relationship SMILES: Simplified molecular-input line-entry system 3-D: Three-dimensional DMD Fast Forward. -
Localisation of Equilibrative Nucleoside Transporter 3 (ENT3) in Mouse Brain
Localisation of equilibrative nucleoside transporter 3 (ENT3) in mouse brain By Lauren Emilienne Roberts A thesis submitted to the Faculty of Graduate Studies in partial fulfilment of the requirements for the degree of Master of Science Department of Pharmacology & Therapeutics Faculty of Medicine University of Manitoba Winnipeg, Manitoba October 2014 © Copyright 2014, Lauren Roberts Abstract Adenosine is an essential purine nucleoside of particular importance within heart and brain. The widespread and diverse actions of adenosine, driven by activation of cell surface re- ceptors, include regulation of sleep/arousal and neuroprotective properties. The mecha- nisms involved in regulating adenosine concentrations remain poorly understood but are critical to signaling pathways as they determine the availability of adenosine at correspond- ing receptors within the extracellular space. The equilibrative nucleoside transporter (ENT) family, bi-directional, Na+-independent nucleoside transporters, are key components in both the release and uptake of adenosine. This study has been conducted to investigate ENT3, a novel member of the ENT family. Our work has demonstrated ENT3 to be ex- pressed throughout brain, located in cortex, cerebellum, striatum and hippocampus, at sim- ilar levels. Neurons and astrocytes, but not microglia, showed intracellular ENT3 localisa- tion. This was confirmed by differential centrifugation, of cortex and cerebellum, which suggests ENT3 to be found within the cytoplasm. Acknowledgments I have been making a mental list of all the amazing people who have helped me as I worked towards completing this beast and the list has gotten rather long so before they start turning the music up and getting out the cane to yank me off the stage, I better get to it! Dr. -
Oxytocin Receptor Gene Methylation: Converging Multilevel Evidence for a Role in Social Anxiety
Neuropsychopharmacology (2015) 40, 1528–1538 & 2015 American College of Neuropsychopharmacology. All rights reserved 0893-133X/15 www.neuropsychopharmacology.org Oxytocin Receptor Gene Methylation: Converging Multilevel Evidence for a Role in Social Anxiety 1,13 2,3,13 4,13 5 2,6 Christiane Ziegler , Udo Dannlowski , David Bra¨uer , Stephan Stevens , Inga Laeger , 2 7 8 9 1 10 Hannah Wittmann , Harald Kugel , Christian Dobel , Rene´ Hurlemann , Andreas Reif , Klaus-Peter Lesch , 7 11 2 5 4 Walter Heindel , Clemens Kirschbaum , Volker Arolt , Alexander L Gerlach ,Ju¨rgen Hoyer , 1 2,12,14 ,1,14 Ju¨rgen Deckert , Peter Zwanzger and Katharina Domschke* 1 2 Department of Psychiatry, University of Wu¨rzburg, Wu¨rzburg, Germany; Department of Psychiatry, University of Mu¨nster, Mu¨nster, Germany; 3 4 Department of Psychiatry, University of Marburg, Marburg, Germany; Institute of Clinical Psychology and Psychotherapy, Technische Universita¨t 5 6 Dresden, Dresden, Germany; Institute of Clinical Psychology and Psychotherapy, University of Cologne, Cologne, Germany; Institute of Psychology, University of Mu¨nster, Mu¨nster, Germany; 7Department of Clinical Radiology, University of Mu¨nster, Mu¨nster, Germany; 8Institute of Biogmagnetism and Biosignal Analysis, University of Munster, Munster, Germany; 9Division of Medical Psychology, Department of Psychiatry, ¨ ¨ 10 University of Bonn, Bonn, Germany; Division of Molecular Psychiatry, Department of Psychiatry, University of Wu¨rzburg, Wu¨rzburg, Germany; 11 12 Institute of Biopsychology, Technische Universita¨t Dresden, Dresden, Germany; kbo-Inn-Salzach-Klinikum, Wasserburg am Inn, Germany Social anxiety disorder (SAD) is a commonly occurring and highly disabling disorder. The neuropeptide oxytocin and its receptor (OXTR) have been implicated in social cognition and behavior. -
MGMT Methylation and Beyond Lorenzo Fornaro1, Ca
[Frontiers in Bioscience, Elite, 8, 170-180, January 1, 2016] Pharmacoepigenetics in gastrointestinal tumors: MGMT methylation and beyond Lorenzo Fornaro1, Caterina Vivaldi1, Chiara Caparello1, Gianna Musettini1, Editta Baldini2, Gianluca Masi1, Alfredo Falcone1 1Unit of Medical Oncology 2, Azienda Ospedaliero-Universitaria Pisana, Pisa, Italy, 2Unit of Oncology, Department of Oncology, Azienda USL2, Lucca, Italy TABLE OF CONTENTS 1. Abstract 2. Introduction 3. MGMT methylation in mCRC 3.1. Current evidence supporting a role for MGMT methylation as therapeutic target in mCRC 3.2. Open questions about MGMT methylation in mCRC: ready for prime time? 4. Beyond MGMT in mCRC: too many questions and still no answers 5. Epigenetic mechanisms and treatment of advanced non-colorectal GI malignancies: still far from the clinics 6. Discussion 7. References 1. ABSTRACT Epigenetic mechanisms are involved in Epigenetics has generated great interest as a gastrointestinal (GI) cancer pathogenesis. Insights valuable companion to cancer genetics in the unravelling into the molecular basis of GI carcinogenesis led to of tumor initiation and progression in recent years (5). the identification of different epigenetic pathways Even more intriguingly, epigenetic alterations have and signatures that may play a role as therapeutic been proved effective in predicting disease course in targets in metastatic colorectal cancer (mCRC) and specific solid malignancies (e.g. glioblastoma), thus non-colorectal GI tumors. Among these alterations, adding additional prognostic information to conventional O6-methylguanine DNA methyltransferase (MGMT) pathologic and clinical features in the clinics. As regards gene promoter methylation is the most investigated treatment response, epigenetics is being explored as a biomarker and seems to be an early and frequent event, predictive tool for activity and efficacy of both cytotoxics at least in CRC. -
The Role of Epigenomics in Personalized Medicine
HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author Expert Rev Manuscript Author Precis Med Drug Manuscript Author Dev. Author manuscript; available in PMC 2018 January 31. Published in final edited form as: Expert Rev Precis Med Drug Dev. 2017 ; 2(1): 33–45. doi:10.1080/23808993.2017.1284557. The role of epigenomics in personalized medicine Mohamad M. Kronfola, Mikhail G. Dozmorovb, Rong Huangc, Patricia W. Slattuma, and Joseph L. McClaya,* aDepartment of Pharmacotherapy and Outcomes Science, Virginia Commonwealth University School of Pharmacy, Richmond, Virginia, USA bDepartment of Biostatistics, Virginia Commonwealth University School of Medicine, Richmond, Virginia, USA cDepartment of Medicinal Chemistry, Virginia Commonwealth University School of Pharmacy, Richmond, Virginia, USA Abstract Introduction—Epigenetics is the study of reversible modifications to chromatin and their extensive and profound effects on gene regulation. To date, the role of epigenetics in personalized medicine has been under-explored. Therefore, this review aims to highlight the vast potential that epigenetics holds. Areas covered—We first review the cell-specific nature of epigenetic states and how these can vary with developmental stage and in response to environmental factors. We then summarize epigenetic biomarkers of disease, with a focus on diagnostic tests, followed by a detailed description of current and pipeline drugs with epigenetic modes of action. Finally, we discuss epigenetic biomarkers of drug response. Expert commentary—Epigenetic variation can yield information on cellular states and developmental histories in ways that genotype information cannot. Furthermore, in contrast to fixed genome sequence, epigenetic patterns are plastic, so correcting aberrant, disease-causing epigenetic marks holds considerable therapeutic promise.