Computational Reproducibility in Archaeological Research: Basic Principles and a Case Study of Their Implementation
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Radical Solutions and Open Science an Open Approach to Boost Higher Education Lecture Notes in Educational Technology
Lecture Notes in Educational Technology Daniel Burgos Editor Radical Solutions and Open Science An Open Approach to Boost Higher Education Lecture Notes in Educational Technology Series Editors Ronghuai Huang, Smart Learning Institute, Beijing Normal University, Beijing, China Kinshuk, College of Information, University of North Texas, Denton, TX, USA Mohamed Jemni, University of Tunis, Tunis, Tunisia Nian-Shing Chen, National Yunlin University of Science and Technology, Douliu, Taiwan J. Michael Spector, University of North Texas, Denton, TX, USA The series Lecture Notes in Educational Technology (LNET), has established itself as a medium for the publication of new developments in the research and practice of educational policy, pedagogy, learning science, learning environment, learning resources etc. in information and knowledge age, – quickly, informally, and at a high level. Abstracted/Indexed in: Scopus, Web of Science Book Citation Index More information about this series at http://www.springer.com/series/11777 Daniel Burgos Editor Radical Solutions and Open Science An Open Approach to Boost Higher Education Editor Daniel Burgos Research Institute for Innovation & Technology in Education (UNIR iTED) Universidad Internacional de La Rioja (UNIR) Logroño, La Rioja, Spain ISSN 2196-4963 ISSN 2196-4971 (electronic) Lecture Notes in Educational Technology ISBN 978-981-15-4275-6 ISBN 978-981-15-4276-3 (eBook) https://doi.org/10.1007/978-981-15-4276-3 © The Editor(s) (if applicable) and The Author(s) 2020. This book is an open access publication. Open Access This book is licensed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license and indicate if changes were made. -
Open Data Citation Advantage
Briefing Paper The Open Data Citation Advantage Introduction The impact of scientific research continues to be evaluated by mechanisms that rely on the citation rates of published literature, so researchers, funders and research-performing organisations (RPOs) are all understandably keen to increase citations. SPARC Europe ran the Open Access Citation Advantage Service, which tracked literature on whether or not there is a citation advantage for Open Access articles. This is now so well established that they have stopped tracking the evidence. There is now increasing evidence that open practice with data also has a positive effect in a range of domains so widely spread that those who disagree with the effect would need to find conclusive evidence of domains where it does not hold. Several studies have shown that papers where the underlying data is available receive more citations over a longer period, and help generate further research. Open practice with data boosts citations to papers it underlies, providing a clear payoff to researchers for their data sharing effort. Moreover, open data practice increases the likelihood that the data itself will be cited as a scholarly output. The situation is complex; ‘open practice’ with data does not always simply mean ‘open data’, and other factors can also increase citation counts. In some domains, open data and publication linking is the norm and so no comparative studies can be done between those that do and do not make data available. The evidence is strong enough, however, to warrant effort from funders and RPOs to support researchers in open data practice. This briefing reviews a sample of the evidence, and recommends closer attention to potential links between the domains where these benefits have been found, and their prior investment in research data infrastructure. -
The Effects of Open Access on Un-Published Documents: a Case Study of Economics Working Papers Tove Faber Frandsen
The effects of open access on un-published documents: A case study of economics working papers Tove Faber Frandsen To cite this version: Tove Faber Frandsen. The effects of open access on un-published documents: A case study ofeco- nomics working papers. Journal of Informetrics, Elsevier, 2009, In press. hprints-00352359v2 HAL Id: hprints-00352359 https://hal-hprints.archives-ouvertes.fr/hprints-00352359v2 Submitted on 12 Jan 2009 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. The effects of open access on un-published documents: A case study of economics working papers Tove Faber Frandsen Royal School of Library and Information Science Birketinget 6, DK-2300 Copenhagen S, DENMARK Phone: +45 3258 6066 Fax: +45 3284 0201 E-mail: [email protected] Abstract The use of scholarly publications that have not been formally published in e.g. journals is widespread in some fields. In the past they have been disseminated through various channels of informal communication. However, the Internet has enabled dissemination of these unpublished and often unrefereed publications to a much wider audience. This is particularly interesting seen in relation to the highly disputed open access advantage as the potential advantage for low visibility publications has not been given much attention in the literature. -
Computational Reproducibility in Archaeological Research: Basic Principles and a Case
Running head: BASIC COMPUTATIONAL REPRODUCIBILITY 1 1 Computational Reproducibility in Archaeological Research: Basic Principles and a Case 2 Study of Their Implementation 1, 2 3 Ben Marwick 1 4 Department of Anthropology, University of Washington, Seattle 2 5 Center for Archaeological Science, University of Wollongong, Australia 6 Author note 7 Correspondence concerning this article should be addressed to Ben Marwick, 8 Department of Anthropology, University of Washington, Seattle. E-mail: [email protected] BASIC COMPUTATIONAL REPRODUCIBILITY 2 9 Abstract 10 The use of computers and complex software is pervasive in archaeology, yet their role in the 11 analytical pipeline is rarely exposed for other researchers to inspect or reuse. This limits the 12 progress of archaeology because researchers cannot easily reproduce each other’s work to 13 verify or extend it. Four general principles of reproducible research that have emerged in 14 other fields are presented. An archaeological case study is described that shows how each 15 principle can be implemented using freely available software. The costs and benefits of 16 implementing reproducible research are assessed. The primary benefit, of sharing data in 17 particular, is increased impact via an increased number of citations. The primary cost is the 18 additional time required to enhance reproduciblity, although the exact amount is difficult to 19 quantify. BASIC COMPUTATIONAL REPRODUCIBILITY 3 20 Computational Reproducibility in Archaeological Research: Basic Principles and a Case 21 Study of Their Implementation 22 Introduction 23 Archaeology, like all scientific fields, advances through rigorous tests of previously 24 published studies. When numerous investigations are performed by different researchers and 25 demonstrate similar results, we hold these results to be a reasonable approximation of a true 26 account of past human behavior. -
Altmetrics to Quantify the Impact of Scientific Research Published in Open Full Text Repositories Bertil Dorch
Altmetrics to quantify the impact of scientific research published in open full text repositories Bertil Dorch To cite this version: Bertil Dorch. Altmetrics to quantify the impact of scientific research published in open full text repositories. 2013, pp.6773. 10.5281/zenodo.6773. hprints-00822129 HAL Id: hprints-00822129 https://hal-hprints.archives-ouvertes.fr/hprints-00822129 Submitted on 14 May 2013 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Discussion paper Altmetrics to quantify the impact of scientific research published in open full text repositories S. B. F. Dorch The Royal Library / University of Copenhagen Library, Copenhagen, Denmark First version March 8, 2013 Abstract Measures of the impact of scientific research increasingly become tools for various administrative applications. Bibliometric measures of the impact of research typically rely on citation analyses, which may not be appropriately representing all areas of scholarship, e.g. Arts and humanities. Metrics alternative to citation analyses are referred to as altmetrics, and include parameters derived from usage data, e.g. the number of times a paper is downloaded. In this paper I consider usage data from the open full text repository hprints.org for Nordic arts and humanities, and on the basis of an analysis of a small dataset from hprints.org, suggest new altmetrics based on the normalized squared number of downloads d downloads that could prove to be a valuable tool to quantify the impact of research published in open full text repositories. -
Oration ''Audivi'' of Enea Silvio Piccolomini (16 November 1436
Oration ”Audivi” of Enea Silvio Piccolomini (16 November 1436, Basel). Edited and translated by Michael v. Cotta-Schönberg. Final edition, 16th version. (Orations of Enea Silvio Piccolomini / Pope Pius II; 1) Michael Cotta-Schønberg To cite this version: Michael Cotta-Schønberg. Oration ”Audivi” of Enea Silvio Piccolomini (16 November 1436, Basel). Edited and translated by Michael v. Cotta-Schönberg. Final edition, 16th version. (Orations of Enea Silvio Piccolomini / Pope Pius II; 1). 2019. hprints-00683151 HAL Id: hprints-00683151 https://hal-hprints.archives-ouvertes.fr/hprints-00683151 Submitted on 8 Jul 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. (Orations of Enea Silvio Piccolomini / Pope Pius II; 1) 0 Oration “Audivi” of Enea Silvio Piccolomini (16 November 1436, Basel). Edited and translated by Michael von Cotta- Schönberg Final edition, 2nd version July 2019 Copenhagen 1 Abstract On 16 November 1436, Enea Silvio Piccolomini delivered the oration Audivi to the fathers of the Council of Basel, concerning the venue for the Union Council between the Latin Church and the Greek Church. He argued for the City of Pavia in the territory of the Duke of Milan. -
Book of Abstracts
Book of Abstracts June 27, 2015 1 Conference Sponsors Diamond Sponsor Platinum Sponsors Gold Sponsors Silver Sponsors Open Analytics Bronze Sponsors Media Sponsors 2 Conference program Time Tuesday Wednesday Thursday Friday 08:00 Registration opens Registration opens Registration opens Registration opens 08:30 – 09:00 Opening session (by Rector peR! M. Johansen, Aalborg University) Aalborghallen 09:00 – 10:00 Romain François Di Cook Thomas Lumley Aalborghallen Aalborghallen Aalborghallen 10:00 – 10:30 Coffee break Coffee break Coffee break (15 min) ee break Sponsored by Quantide Sponsored by Alteryx ff Session 1 Session 4 10:30 – 12:00 Sponsor session (10:15) Kaleidoscope 1 Kaleidoscope 4 Aalborghallen Aalborghallen Aalborghallen incl. co Morning Tutorials DataRobot Ecology Medicine Gæstesalen Gæstesalen RStudio Teradata Networks Regression Musiksalen Musiksalen Revolution Analytics Reproducibility Commercial Offerings alteryx Det Lille Teater Det Lille Teater TIBCO H O Interfacing Interactive graphics 2 Radiosalen Radiosalen HP 12:00 – 13:00 Sandwiches Lunch (standing buffet) Lunch (standing buffet) Break: 12:00 – 12:30 Sponsored by Sponsored by TIBCO ff Revolution Analytics Ste en Lauritzen (12:30) Aalborghallen Session 2 Session 5 13:00 – 14:30 13:30: Closing remarks Kaleidoscope 2 Kaleidoscope 5 Aalborghallen Aalborghallen 13:45: Grab ’n go lunch 14:00: Conference ends Case study Teaching 1 Gæstesalen Gæstesalen Clustering Statistical Methodology 1 Musiksalen Musiksalen ee break Data Management Machine Learning 1 ff Det Lille Teater Det Lille -
3/7 2008 Open Access to Scientific Works of Nobel Prize Winners
3/7 2008 Open Access to Scientific Works of Nobel Prize Winners Sweden's OpenAcess.se, the National Library of Sweden, Lund University Libraries, the Royal Swedish Academy of Sciences, and the Nobel Assembly at Karolinska Institutet are developing a plan for retroactive OA to the major papers of Nobel laureates in physics, chemistry, and physiology or medicine. Read more: http://www.kb.se/english/about/projects/openacess/projects/#Open and: http://www.kb.se/english/about/news/openaccess/ Contact: Jörgen Eriksson (Lund University Libraries, Head Office), Project co-ordinator: [email protected] -------------------------------------------------------------------------------------------------------------------- 29/4 2008 Nordic Countries Hprints -The Nordic arts and humanities e-print archive – has been launched Hprints is an Open Access repository aiming at making scholarly documents from the Arts and Humanities publicly available to the widest possible audience. It is the first of its kind in the Nordic Countries for the Humanities. Hprints is supported by the Nordbib research funding programme Denmark, Norway and Sweden have signed Expressions of Interest for joining the SCOAP3 SCOAP3 (Sponsoring Consortium for Open Access Publishing in Particle Physics Sponsoring Consortium for Open Access Publishing in Particle Physics Denmark The Danish Research Council for Culture and Communication has decided to change its journal support policy. To receive support journals are obliged to offer Open Access after a certain time period. Sweden -
Teaching & Researching Big History: Exploring a New Scholarly Field
Teaching & Researching Big History: Exploring a New Scholarly Field Leonid Grinin, David Baker, Esther Quaedackers, Andrey Korotayev To cite this version: Leonid Grinin, David Baker, Esther Quaedackers, Andrey Korotayev. Teaching & Researching Big History: Exploring a New Scholarly Field. France. Uchitel, pp.368, 2014, 978-5-7057-4027-7. hprints- 01861224 HAL Id: hprints-01861224 https://hal-hprints.archives-ouvertes.fr/hprints-01861224 Submitted on 24 Aug 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Public Domain INTERNATIONAL BIG HISTORY ASSOCIATION RUSSIAN ACADEMY OF SCIENCES INSTITUTE OF ORIENTAL STUDIES The Eurasian Center for Big History and System Forecasting TEACHING & RESEARCHING BIG HISTORY: EXPLORING A NEW SCHOLARLY FIELD Edited by Leonid Grinin, David Baker, Esther Quaedackers, and Andrey Korotayev ‘Uchitel’ Publishing House Volgograd ББК 28.02 87.21 Editorial Council: Cynthia Stokes Brown Ji-Hyung Cho David Christian Barry Rodrigue Teaching & Researching Big History: Exploring a New Scholarly Field / Edited by Leonid E. Grinin, David Baker, Esther Quaedackers, and Andrey V. Korotayev. – Volgograd: ‘Uchitel’ Publishing House, 2014. – 368 pp. According to the working definition of the International Big History Association, ‘Big History seeks to understand the integrated history of the Cosmos, Earth, Life and Humanity, using the best available empirical evidence and scholarly methods’. -
Packaging Data Analytical Work Reproducibly Using R (And Friends)
University of Wollongong Research Online Faculty of Science, Medicine and Health - Papers: part A Faculty of Science, Medicine and Health 1-1-2018 Packaging Data Analytical Work Reproducibly Using R (and Friends) Ben Marwick University of Washington, [email protected] Carl Boettiger University of Wollongong Lincoln Mullen George Mason University Follow this and additional works at: https://ro.uow.edu.au/smhpapers Part of the Medicine and Health Sciences Commons, and the Social and Behavioral Sciences Commons Recommended Citation Marwick, Ben; Boettiger, Carl; and Mullen, Lincoln, "Packaging Data Analytical Work Reproducibly Using R (and Friends)" (2018). Faculty of Science, Medicine and Health - Papers: part A. 5389. https://ro.uow.edu.au/smhpapers/5389 Research Online is the open access institutional repository for the University of Wollongong. For further information contact the UOW Library: [email protected] Packaging Data Analytical Work Reproducibly Using R (and Friends) Abstract Computers are a central tool in the research process, enabling complex and large-scale data analysis. As computer-based research has increased in c omplexity, so have the challenges of ensuring that this research is reproducible. To address this challenge, we review the concept of the research compendium as a solution for providing a standard and easily recognizable way for organizing the digital materials of a research project to enable other researchers to inspect, reproduce, and extend the research. We investigate how the structure and tooling of software packages of the R programming language are being used to produce research compendia in a variety of disciplines. We also describe how software engineering tools and services are being used by researchers to streamline working with research compendia. -
Half Term Report: Licence to Publish – Promoting Open Access And
Half term report: Licence to publish – promoting Open Access and authors’ rights in the Nordic social sciences and humanities Simone Schipp von Branitz Nielsen, Thea Marie Drachen, Bertil Dorch To cite this version: Simone Schipp von Branitz Nielsen, Thea Marie Drachen, Bertil Dorch. Half term report: Licence to publish – promoting Open Access and authors’ rights in the Nordic social sciences and humanities. 2009. hprints-00437866 HAL Id: hprints-00437866 https://hal-hprints.archives-ouvertes.fr/hprints-00437866 Preprint submitted on 1 Dec 2009 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. hprints.org Half term report to Nordbib – August 2009 “Licence to publish – promoting Open Access and authors’ rights in the Nordic social sciences and humanities” Simone Schipp von Branitz Nielsen (Project Manager) et al. CULIS Knowledge Center for Scholarly Communication The Royal Library / Copenhagen University Library and Information Service Project period: April 1st 2009 – July 31st 2009 Grant: 225.000 DKK (total budget frame) and 90.000 DKK (from Nordbib) Summary of project results As stated in the original application to Nordbib’s Focus Area “Policy and visibility” (Work Package 1), the purpose of the project was to increase the awareness and understanding of the principles of Open Access by providing a dialogue among stakeholders on authors’ rights and Open Access principles. -
Cloud Computing with E-Science Applications
TERZO Information Technology • MOSSUCCA Cloud Computing with e-Science Applications The amount of data in everyday life has been exploding. This data increase has been especially signicant in scientic elds, where substantial amounts of data must be captured, communicated, aggregated, stored, and analyzed. Cloud Computing with e-Science Applications explains how cloud computing can improve data management in data-heavy elds such as bioinformatics, earth science, and computer science. Cloud Computing The book begins with an overview of cloud models supplied by the National Institute of Standards and Technology (NIST), and then: • Discusses the challenges imposed by big data on scientic data infrastructures, including security and trust issues • Covers vulnerabilities such as data theft or loss, privacy concerns, infected applications, threats in virtualization, and cross-virtual machine attack with • Describes the implementation of workows in clouds, proposing an architecture composed of two layers—platform and application • Details infrastructure-as-a-service (IaaS), platform-as-a-service (PaaS), e-Science Applications and software-as-a-service (SaaS) solutions based on public, private, and hybrid cloud computing models • Demonstrates how cloud computing aids in resource control, vertical and horizontal scalability, interoperability, and adaptive scheduling Featuring signicant contributions from research centers, universities, Cloud Computing and industries worldwide, Cloud Computing with e-Science Applications presents innovative cloud