Giemsa Staining and Antibody Characterization of Colpodella Sp
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Basal Body Structure and Composition in the Apicomplexans Toxoplasma and Plasmodium Maria E
Francia et al. Cilia (2016) 5:3 DOI 10.1186/s13630-016-0025-5 Cilia REVIEW Open Access Basal body structure and composition in the apicomplexans Toxoplasma and Plasmodium Maria E. Francia1* , Jean‑Francois Dubremetz2 and Naomi S. Morrissette3 Abstract The phylum Apicomplexa encompasses numerous important human and animal disease-causing parasites, includ‑ ing the Plasmodium species, and Toxoplasma gondii, causative agents of malaria and toxoplasmosis, respectively. Apicomplexans proliferate by asexual replication and can also undergo sexual recombination. Most life cycle stages of the parasite lack flagella; these structures only appear on male gametes. Although male gametes (microgametes) assemble a typical 9 2 axoneme, the structure of the templating basal body is poorly defined. Moreover, the rela‑ tionship between asexual+ stage centrioles and microgamete basal bodies remains unclear. While asexual stages of Plasmodium lack defined centriole structures, the asexual stages of Toxoplasma and closely related coccidian api‑ complexans contain centrioles that consist of nine singlet microtubules and a central tubule. There are relatively few ultra-structural images of Toxoplasma microgametes, which only develop in cat intestinal epithelium. Only a subset of these include sections through the basal body: to date, none have unambiguously captured organization of the basal body structure. Moreover, it is unclear whether this basal body is derived from pre-existing asexual stage centrioles or is synthesized de novo. Basal bodies in Plasmodium microgametes are thought to be synthesized de novo, and their assembly remains ill-defined. Apicomplexan genomes harbor genes encoding δ- and ε-tubulin homologs, potentially enabling these parasites to assemble a typical triplet basal body structure. -
Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
Effects of Chlorophyllin on Encystment Suppression and Excystment Induction in Colpoda Cucullus Nag-1: an Implication of Chlorophyllin Receptor
Asian Jr. of Microbiol. Biotech. Env. Sc. Vol. 22 (4) : 2020 : 573-578 © Global Science Publications ISSN-0972-3005 EFFECTS OF CHLOROPHYLLIN ON ENCYSTMENT SUPPRESSION AND EXCYSTMENT INDUCTION IN COLPODA CUCULLUS NAG-1: AN IMPLICATION OF CHLOROPHYLLIN RECEPTOR MASAYA MORISHITA1, FUTOSHI SUIZU2, MIKIHIKO ARIKAWA3 AND TATSUOMI MATSUOKA3 1Department of Biological Science, Faculty of Science, Kochi University, Kochi 780-8520, Japan 2Division of Cancer Biology, Institute for Genetic Medicine, Hokkaido University, Sapporo 060-0815, Japan; 3Department of Biological Science, Faculty of Science and Technology, Kochi University, Kochi 780-8520, Japan (Received 22 March, 2020; accepted 4 August, 2020) Key words: Chlorophyllin, Chlorophyllin receptors, Resting cyst, Cyst wall, Trypsin Abstract–Among the molecules suppressing encystment and inducing excystment of Colpoda cucullus Nag- 1, sodium copper chlorophyllin is the only molecule whose molecular structure is known. The present study showed that sodium iron chlorophyllin also had marked effects. When the encysting cells (2-day-aged immature cysts) of C. cucullus Nag-1 were treated with trypsin (1 mg/mL), excystment was suppressed. In this case, most of the cysts that failed to excyst were alive, because the selective permeability of the plasma membrane of these cysts functioned normally. These results suggest that presumed chlorophyllin receptors which are involved in the induction of excystment may occur on the plasma membranes of the resting cysts. Two-day-aged cysts (immature cysts) are surrounded by thick cyst walls. We assessed whether chlorophyllin and trypsin (23 kDa) penetrate across the cyst wall. When the cysts were immersed in the fluorescent molecule phycocyanin (40 kDa), a vivid phycocyanin fluorescence was observed inside or on the cyst wall, indicating that phycocyanin penetrates across the cyst wall. -
Molecular Events During Resting Cyst Formation in Unicellular Eukaryote Colpoda
Mini Review ISSN: 2574 -1241 DOI: 10.26717/BJSTR.2019.23.003916 Molecular Events During Resting Cyst Formation in Unicellular Eukaryote Colpoda Tatsuomi Matsuoka* Department of Biological Science, Faculty of Science & Technology, Kochi University, Japan *Corresponding author: T Matsuoka, Department of Biological Science, Faculty of Science & Technology, Kochi University 780-8520, Japan ARTICLE INFO Abstract Received: November 20, 2019 An understanding of intracellular signaling pathways leading to resting cyst formation (encystment) is essential for the development of clinical drugs to prevent Published: December 04, 2019 the life cycle of pathogenic unicellular eukaryotes. Recent studies imply that there are common signaling pathways among pathogenic and nonpathogenic unicellular Citation: Tatsuomi Matsuoka. Molecu- eukaryotes. This paper describes molecular events, including signaling pathways, in lar Events During Resting Cyst Formation the encystment of the nonpathogenic unicellular eukaryote Colpoda, based on results obtained mainly in our laboratory in the past 20 years. in Unicellular Eukaryote Colpoda. Bi- 2+ 2+ omed J Sci & Tech Res 23(3)-2019. BJSTR. Abbreviations: Ca /CaM: Ca /calmodulin; UV: Ultraviolet rays; PKA: Protein kinase A; Phos-tag/ECL: Phosphate-binding tag/enhanced chemiluminescence; LC-MS/MS: MS.ID.003916. Liquid chromatography-tandem mass spectrometry; 2-D PAGE: Two-dimensional Keywords: Colpoda; Resting Cysts; polyacrylamide gel electrophoresis; SDS-PAGE: Sodium dodecyl sulfate-polyacrylamide Encystment; Ca2+/Calmodulin; cAMP; Phosphorylation eEF2K : Eukaryotic Elongation Factor-2 Kinase gel electrophoresis: EF-1α: Elongation factor 1α; AMPK: AMP-activated protein kinase; Introduction temperature, acid, and UV light [4-7]. In the case of Colpoda cucullus One strategy of some pathogenic unicellular eukaryotes is to Nag-1 [8], encystment can be induced by suspending vegetative form resting cysts that are resistant to the environmental stresses Colpoda cells at a high cell density in the presence of Ca2+ [3]. -
4/9/15 1 Alveolates
4/9/15 Bayli Russ ALVEOLATES April 9, 2015 WHAT IS IT? ¡ Alveolates- Major superphylum of protists ¡ Group of single-celled eukaryotes that get their nutrition by predation, photoautotrophy, and intracellular parasitism ¡ Spherical basophilic organisms (6-9 µm diameter) ¡ Most notable shared characteristic is presence of cortical alveoli, flattened vesicles packed into linear layer supporting the membrane, typically forming a flexible pellicle (Leander, 2008) WHAT IS IT? ¡ 3 main subgroups: § Ciliatesà predators that inhabit intestinal tracts and flesh § Dinoflagellatesà mostly free living predators or photoautotrophs, release toxins § Apicomplexansà obligate parasite; invade host cells ¡ Several other lineages such as: § Colpodella § Chromera § Colponema § Ellobiopsids § Oxyrrhis § Rastrimonas § Parvilucifera § Perkinsus (Leander, 2008) 1 4/9/15 HOW DOES IT KILL AMPHIBIANS? ¡ Cause infection and disease in amphibian populations § Infection = parasite occurs in host; occupying intestinal lumen § Disease = advanced infection; presence of spores in tissues; occupying intestinal mucosa, liver, skin, rectum, mesentery, adipose tissue, pancreas, spleen, kidney, and somatic musculature ¡ Effects on organs § Filters into host’s internal organs in mass amounts § Causes organ enlargement and severe tissue alteration § Obliterates kidney and liver structure § System shut-down = DEATH ¡ How its introduced to environment § Birds § Insects ¡ How it spreads/transmission: § Ingestion of spores § Feces of infected individuals § Tissues from dead/dying -
(Alveolata) As Inferred from Hsp90 and Actin Phylogenies1
J. Phycol. 40, 341–350 (2004) r 2004 Phycological Society of America DOI: 10.1111/j.1529-8817.2004.03129.x EARLY EVOLUTIONARY HISTORY OF DINOFLAGELLATES AND APICOMPLEXANS (ALVEOLATA) AS INFERRED FROM HSP90 AND ACTIN PHYLOGENIES1 Brian S. Leander2 and Patrick J. Keeling Canadian Institute for Advanced Research, Program in Evolutionary Biology, Departments of Botany and Zoology, University of British Columbia, Vancouver, British Columbia, Canada Three extremely diverse groups of unicellular The Alveolata is one of the most biologically diverse eukaryotes comprise the Alveolata: ciliates, dino- supergroups of eukaryotic microorganisms, consisting flagellates, and apicomplexans. The vast phenotypic of ciliates, dinoflagellates, apicomplexans, and several distances between the three groups along with the minor lineages. Although molecular phylogenies un- enigmatic distribution of plastids and the economic equivocally support the monophyly of alveolates, and medical importance of several representative members of the group share only a few derived species (e.g. Plasmodium, Toxoplasma, Perkinsus, and morphological features, such as distinctive patterns of Pfiesteria) have stimulated a great deal of specula- cortical vesicles (syn. alveoli or amphiesmal vesicles) tion on the early evolutionary history of alveolates. subtending the plasma membrane and presumptive A robust phylogenetic framework for alveolate pinocytotic structures, called ‘‘micropores’’ (Cavalier- diversity will provide the context necessary for Smith 1993, Siddall et al. 1997, Patterson -
Transcriptomic Analysis Reveals Evidence for a Cryptic Plastid in the Colpodellid Voromonas Pontica, a Close Relative of Chromerids and Apicomplexan Parasites
Transcriptomic Analysis Reveals Evidence for a Cryptic Plastid in the Colpodellid Voromonas pontica, a Close Relative of Chromerids and Apicomplexan Parasites Gillian H. Gile*, Claudio H. Slamovits Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada Abstract Colpodellids are free-living, predatory flagellates, but their close relationship to photosynthetic chromerids and plastid- bearing apicomplexan parasites suggests they were ancestrally photosynthetic. Colpodellids may therefore retain a cryptic plastid, or they may have lost their plastids entirely, like the apicomplexan Cryptosporidium. To find out, we generated transcriptomic data from Voromonas pontica ATCC 50640 and searched for homologs of genes encoding proteins known to function in the apicoplast, the non-photosynthetic plastid of apicomplexans. We found candidate genes from multiple plastid-associated pathways including iron-sulfur cluster assembly, isoprenoid biosynthesis, and tetrapyrrole biosynthesis, along with a plastid-type phosphate transporter gene. Four of these sequences include the 59 end of the coding region and are predicted to encode a signal peptide and a transit peptide-like region. This is highly suggestive of targeting to a cryptic plastid. We also performed a taxon-rich phylogenetic analysis of small subunit ribosomal RNA sequences from colpodellids and their relatives, which suggests that photosynthesis was lost more than once in colpodellids, and independently in V. pontica and apicomplexans. Colpodellids therefore represent a valuable source of comparative data for understanding the process of plastid reduction in humanity’s most deadly parasite. Citation: Gile GH, Slamovits CH (2014) Transcriptomic Analysis Reveals Evidence for a Cryptic Plastid in the Colpodellid Voromonas pontica, a Close Relative of Chromerids and Apicomplexan Parasites. -
Predatory Flagellates – the New Recently Discovered Deep Branches of the Eukaryotic Tree and Their Evolutionary and Ecological Significance
Protistology 14 (1), 15–22 (2020) Protistology Predatory flagellates – the new recently discovered deep branches of the eukaryotic tree and their evolutionary and ecological significance Denis V. Tikhonenkov Papanin Institute for Biology of Inland Waters, Russian Academy of Sciences, Borok, 152742, Russia | Submitted March 20, 2020 | Accepted April 6, 2020 | Summary Predatory protists are poorly studied, although they are often representing important deep-branching evolutionary lineages and new eukaryotic supergroups. This short review/opinion paper is inspired by the recent discoveries of various predatory flagellates, which form sister groups of the giant eukaryotic clusters on phylogenetic trees, and illustrate an ancestral state of one or another supergroup of eukaryotes. Here we discuss their evolutionary and ecological relevance and show that the study of such protists may be essential in addressing previously puzzling evolutionary problems, such as the origin of multicellular animals, the plastid spread trajectory, origins of photosynthesis and parasitism, evolution of mitochondrial genomes. Key words: evolution of eukaryotes, heterotrophic flagellates, mitochondrial genome, origin of animals, photosynthesis, predatory protists, tree of life Predatory flagellates and diversity of eu- of the hidden diversity of protists (Moon-van der karyotes Staay et al., 2000; López-García et al., 2001; Edg- comb et al., 2002; Massana et al., 2004; Richards The well-studied multicellular animals, plants and Bass, 2005; Tarbe et al., 2011; de Vargas et al., and fungi immediately come to mind when we hear 2015). In particular, several prevailing and very abun- the term “eukaryotes”. However, these groups of dant ribogroups such as MALV, MAST, MAOP, organisms represent a minority in the real diversity MAFO (marine alveolates, stramenopiles, opistho- of evolutionary lineages of eukaryotes. -
A KEY to the COMMON PARASITIC PROTOZOANS of NORTH AMERICAN FISHES Thomas L. Wellborn, Jr. and Wilmer A. Rogers Zoology-Ent
. A KEY to the COMMON PARASITIC PROTOZOANS of NORTH AMERICAN FISHES Thomas L. Wellborn, Jr. and Wilmer A. Rogers Zoology-Entomology Department Series Fisheries No. 4 AGRICULTURAL EXPERIMENT STATION AUBURN UNIVERSITY E. V. Smith, Director March 1966 Auburn, Alabama (Revised June 1970) A KEY TO THE COMMON PARASITIC PROTOZOANS 1 OF NORTH AMERICAN FISHES Thomas L. Wellborn, Jr. 2/— and Wilmer A. Rogers 3/— Private, state, and federal fish husbandry industries suffer great losses each year because of disease and parasites. The parasitic protozoans included in this key are the ones most commonly associated with fish mortalities. A total of 23 genera of parasitic protozoans may be identified by use of this key. The fish protozoan parasites are responsible for a large part of the mortalities that occur at fish hatcheries each year. This is because they are capable of building up tremendous populations within relatively short periods of time, and some are capable of causing extreme damage to fish. Proper treatment and control of the diseases caused by the various protozoans are impossible without knowing their identity. This key will be helpful to fishery workers in identifying the more common genera. It must be remembered, however, that a microscope and knowledge of its use are absolute prerequisites for identifying protozoans. Certain parasitic protozoans cannot be identified below the rank of Order - without use of special techniques; therefore, all known genera are not included in the herein reported key. Protozoans belonging to such Orders should be sent to a specialist for identification. 1/ Supported in part by Southeastern Cooperative Fish Parasite and Disease Project (Fish Restoration Funds). -
Supplementary Figure 1 Multicenter Randomised Control Trial 2746 Randomised
Supplementary Figure 1 Multicenter randomised control trial 2746 randomised 947 control 910 MNP without zinc 889 MNP with zinc 223 lost to follow up 219 lost to follow up 183 lost to follow up 34 refused 29 refused 37 refused 16 died 12 died 9 died 3 excluded 4 excluded 1 excluded 671 in follow-up 646 in follow-up 659 in follow-up at 24mo of age at 24mo of age at 24mo of age Selection for Microbiome sequencing 516 paired samples unavailable 469 paired samples unavailable 497 paired samples unavailable 69 antibiotic use 63 antibiotic use 67 antibiotic use 31 outside of WLZ criteria 37 outside of WLZ criteria 34 outside of WLZ criteria 6 diarrhea last 7 days 2 diarrhea last 7 days 7 diarrhea last 7 days 39 WLZ > -1 at 24 mo 10 WLZ < -2 at 24mo 58 WLZ > -1 at 24 mo 17 WLZ < -2 at 24mo 48 WLZ > -1 at 24 mo 8 WLZ < -2 at 24mo available for selection available for selection available for selection available for selection available for selection1 available for selection1 14 selected 10 selected 15 selected 14 selected 20 selected1 7 selected1 1 Two subjects (one in the reference WLZ group and one undernourished) had, at 12 months, no diarrhea within 1 day of stool collection but reported diarrhea within 7 days prior. Length, cm kg Weight, Supplementary Figure 2. Length (left) and weight (right) z-scores of children recruited into clinical trial NCT00705445 during the first 24 months of life. Median and quantile values are shown, with medians for participants profiled in current study indicated by red (undernourished) and black (reference WLZ) lines. -
Transcriptome Analysis Reveals the Encystment-Related Lncrna
www.nature.com/scientificreports OPEN Transcriptome analysis reveals the encystment‑related lncRNA expression profle and coexpressed mRNAs in Pseudourostyla cristata Nan Pan1,4, Muhammad Zeeshan Bhatti2,3,4, Wen Zhang1, Bing Ni1, Xinpeng Fan1* & Jiwu Chen1* Ciliated protozoans form dormant cysts for survival under adverse conditions. The molecular mechanisms regulating this process are critical for understanding how single‑celled eukaryotes adapt to the environment. Despite the accumulated data on morphology and gene coding sequences, the molecular mechanism by which lncRNAs regulate ciliate encystment remains unknown. Here, we frst detected and analyzed the lncRNA expression profle and coexpressed mRNAs in dormant cysts versus vegetative cells in the hypotrich ciliate Pseudourostyla cristata by high‑throughput sequencing and qRT‑PCR. A total of 853 diferentially expressed lncRNAs were identifed. Compared to vegetative cells, 439 and 414 lncRNAs were upregulated and downregulated, respectively, while 47 lncRNAs were specifcally expressed in dormant cysts. A lncRNA‑mRNA coexpression network was constructed, and the possible roles of lncRNAs were screened. Three of the identifed lncRNAs, DN12058, DN20924 and DN30855, were found to play roles in fostering encystment via their coexpressed mRNAs. These lncRNAs can regulate a variety of physiological activities that are essential for encystment, including autophagy, protein degradation, the intracellular calcium concentration, microtubule‑associated dynein and microtubule interactions, and cell proliferation inhibition. These fndings provide the frst insight into the potentially functional lncRNAs and their coexpressed mRNAs involved in the dormancy of ciliated protozoa and contribute new evidence for understanding the molecular mechanisms regulating encystment. Ciliated protozoa are a diverse group of eukaryotes that are commonly found in diferent ecosystems in Earth’s biosphere1. -
The Revised Classification of Eukaryotes
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/231610049 The Revised Classification of Eukaryotes Article in Journal of Eukaryotic Microbiology · September 2012 DOI: 10.1111/j.1550-7408.2012.00644.x · Source: PubMed CITATIONS READS 961 2,825 25 authors, including: Sina M Adl Alastair Simpson University of Saskatchewan Dalhousie University 118 PUBLICATIONS 8,522 CITATIONS 264 PUBLICATIONS 10,739 CITATIONS SEE PROFILE SEE PROFILE Christopher E Lane David Bass University of Rhode Island Natural History Museum, London 82 PUBLICATIONS 6,233 CITATIONS 464 PUBLICATIONS 7,765 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Biodiversity and ecology of soil taste amoeba View project Predator control of diversity View project All content following this page was uploaded by Smirnov Alexey on 25 October 2017. The user has requested enhancement of the downloaded file. The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists J. Eukaryot. Microbiol., 59(5), 2012 pp. 429–493 © 2012 The Author(s) Journal of Eukaryotic Microbiology © 2012 International Society of Protistologists DOI: 10.1111/j.1550-7408.2012.00644.x The Revised Classification of Eukaryotes SINA M. ADL,a,b ALASTAIR G. B. SIMPSON,b CHRISTOPHER E. LANE,c JULIUS LUKESˇ,d DAVID BASS,e SAMUEL S. BOWSER,f MATTHEW W. BROWN,g FABIEN BURKI,h MICAH DUNTHORN,i VLADIMIR HAMPL,j AARON HEISS,b MONA HOPPENRATH,k ENRIQUE LARA,l LINE LE GALL,m DENIS H. LYNN,n,1 HILARY MCMANUS,o EDWARD A. D.