© Copyright 2019 William M. Holden

Total Page:16

File Type:pdf, Size:1020Kb

© Copyright 2019 William M. Holden © Copyright 2019 William M. Holden Laboratory-based Tender X-ray Emission Spectroscopy: Instrumental, Experimental, and Theoretical Advances and Application to the Study of Phosphorus and Sulfur Electronic Structure William M. Holden A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy University of Washington 2019 Reading Committee: Gerald T. Seidler, Chair Marjorie Olmstead Joshua J. Kas Program Authorized to Offer Degree: Physics University of Washington Abstract Laboratory-based Tender X-ray Emission Spectroscopy: Instrumental, Experimental, and Theoretical Advances and Application to the Study of Phosphorus and Sulfur Electronic Structure William M. Holden Chair of the Supervisory Committee: Professor Gerald T. Seidler Physics Tender x-ray emission spectroscopy (XES) is a powerful, element-specific, atomically local probe of chemical and electronic structure. Taking advantage of advances in every component of spectrometer systems including crystal analyzers, color x-ray cameras, and bremsstrahlung x-ray tubes, I designed, built, and demonstrated a new, laboratory-based tender x-ray emission spectrometer. This apparatus creates an opportunity for more widespread access to tender XES measurements, which in recent years have been largely restricted to a limited number of beamlines at synchrotron facilities. Using the developed spectrometer, I performed lab-based XES studies on phosphorus and sulfur, whose emission lines lie in the energy range of optimal performance, and are of significant experimental value due to their chemical sensitivity and the ubiquity of phosphorus and sulfur in environmental, material, and fundamental science. I conducted analytical applications, demonstrating the speciation of phosphorus in indium phosphide quantum dots and the speciation of sulfur in biochars at low concentration. These studies illustrate the strength of P Kα XES as an alternative to solid-state nuclear magnetic resonance (SSNMR), and the ability for S Kα XES to yield information comparable and complementary to synchrotron x-ray absorption near edge structure (XANES). Supplementing these new experimental capabilities, I utilized linear-response time-dependent density functional theory (LR-TDDFT) for theoretical prediction and analysis of Kα core-to-core and Kβ valence-to-core emission lines of sulfur. The strong quantitative agreement between this theoretical approach and the observed results supports future applications in both analytical and theoretical investigations. With the establishment of these experimental and theoretical capabilities by the work in this thesis, tender XES is primed to grow into a powerful and routine analytical tool in both academia and industry. TABLE OF CONTENTS List of Figures .................................................................................................................... vi List of Tables ................................................................................................................... xxi Chapter 1 Introduction to X-ray Emission Spectroscopy ................................................. 1 1.1 What is X-ray Emission Spectroscopy? .................................................................... 1 1.2 Historical context for XES ........................................................................................ 3 1.3 The modern case for laboratory XES........................................................................ 5 1.3.1 Laboratory spectrometers in 1932 and 2017 ...................................................... 5 1.3.2 Advances in spectrometer components .............................................................. 7 1.3.3 Relation to synchrotron XES ............................................................................. 9 1.4 Overview of recent laboratory XES instruments and applications ......................... 11 1.5 References ............................................................................................................... 13 Chapter 2 Tender X-ray Spectroscopy ........................................................................... 16 2.1 Interaction of photons with matter .......................................................................... 16 2.1.1 Interaction Hamiltonian with electromagnetic field ........................................ 17 2.1.2 Photoelectric absorption process...................................................................... 22 2.1.3 Relaxation after creation of core-hole.............................................................. 24 2.1.4 X-ray fluorescence process .............................................................................. 26 2.2 X-ray emission spectroscopy (XES) overview ....................................................... 27 2.3 Kα XES of phosphorus, sulfur, and nearby elements ............................................. 28 2.3.1 Kα Overview .................................................................................................... 28 2.3.2 Kα chemical shifts and sensitivity to oxidation state ....................................... 30 2.3.3 Kα satellite features ......................................................................................... 33 2.4 Kβ Valence-to-Core XES of phosphorus, sulfur, and nearby elements ................. 34 2.4.1 Kβ intensity relative to Kα ............................................................................... 36 2.4.2 Kβ XES spectral features and sensitivities ...................................................... 37 2.4.3 Polarization effects and anisotropic emission .................................................. 47 2.4.4 Kβ satellites ...................................................................................................... 50 2.5 Non-resonant vs. resonant (XES, RXES, & RIXS) ................................................ 51 i 2.6 XES of other elements and other emission lines .................................................... 55 2.7 X-ray absorption spectroscopies ............................................................................. 57 2.7.1 X-ray absorption near-edge spectroscopy (XANES) ....................................... 58 2.7.2 Extended x-ray absorption fine structure (EXAFS)......................................... 63 2.8 X-ray photoelectron spectroscopy (XPS) ............................................................... 67 2.9 References ............................................................................................................... 73 Chapter 3 Tender XES Instrumentation ......................................................................... 80 3.1 Overview ................................................................................................................. 80 3.2 EDXRF, WDXRF, and XES ................................................................................... 81 3.3 Excitation sources ................................................................................................... 82 3.3.1 X-ray tubes ....................................................................................................... 82 3.3.2 Synchrotron beamlines..................................................................................... 87 3.3.3 Other excitation sources ................................................................................... 91 3.4 Detectors ................................................................................................................. 93 3.5 Crystal analyzers ..................................................................................................... 95 3.6 Rowland focusing geometry ................................................................................... 99 3.6.1 Overview of Rowland circle concepts ........................................................... 100 3.6.2 Johann and Johansson geometries ................................................................. 101 3.6.3 Johann error ................................................................................................... 104 3.6.4 Johann error effects on spectrometer response function ................................ 108 3.7 Other crystal analyzer spectrometer geometries ................................................... 110 3.7.1 Double-crystal ................................................................................................ 111 3.7.2 von Hamos ..................................................................................................... 112 3.7.3 Laue-type ....................................................................................................... 113 3.8 Sample considerations for tender XES ................................................................. 115 3.9 References ............................................................................................................. 116 Chapter 4 Overview of Published Research ................................................................. 121 4.1 Research presented in chapters of this thesis ........................................................ 121 4.2 Other outcomes of the efforts in this thesis .......................................................... 122 4.3 References ............................................................................................................. 123 ii Chapter 5 A Compact Dispersive Refocusing Rowland Circle X-ray Emission Spectrometer for Laboratory, Synchrotron, and XFEL Applications ........................ 124 5.1
Recommended publications
  • WO 2016/074683 Al 19 May 2016 (19.05.2016) W P O P C T
    (12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date WO 2016/074683 Al 19 May 2016 (19.05.2016) W P O P C T (51) International Patent Classification: (81) Designated States (unless otherwise indicated, for every C12N 15/10 (2006.01) kind of national protection available): AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, (21) International Application Number: BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DK, DM, PCT/DK20 15/050343 DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, (22) International Filing Date: HN, HR, HU, ID, IL, IN, IR, IS, JP, KE, KG, KN, KP, KR, 11 November 2015 ( 11. 1 1.2015) KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, (25) Filing Language: English PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, (26) Publication Language: English SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. (30) Priority Data: PA 2014 00655 11 November 2014 ( 11. 1 1.2014) DK (84) Designated States (unless otherwise indicated, for every 62/077,933 11 November 2014 ( 11. 11.2014) US kind of regional protection available): ARIPO (BW, GH, 62/202,3 18 7 August 2015 (07.08.2015) US GM, KE, LR, LS, MW, MZ, NA, RW, SD, SL, ST, SZ, TZ, UG, ZM, ZW), Eurasian (AM, AZ, BY, KG, KZ, RU, (71) Applicant: LUNDORF PEDERSEN MATERIALS APS TJ, TM), European (AL, AT, BE, BG, CH, CY, CZ, DE, [DK/DK]; Nordvej 16 B, Himmelev, DK-4000 Roskilde DK, EE, ES, FI, FR, GB, GR, HR, HU, IE, IS, IT, LT, LU, (DK).
    [Show full text]
  • Advances in Heterocyclic Chemistry, Volume 48.Pdf
    Advances in Heterocyclic Chemistry Volume 48 Editorial Advisory Board R. A. Abramovitch, Clemson, South Carolina A. Albert, Canberra, Australia A. T. Balaban, Bucharest, Romania A. J. Boulton, Norwich, England H. Dorn, Berlin, G.D.R. J. Elguero, Madrid, Spain S. Gronowitz, Lund, Sweden T. Kametani, Tokyo, Japan 0. Meth-Cohn, South Africa C. W. Rees, FRS, London, England E. C. Taylor, Princeton, New Jersey M.TiSler, Ljubljana, Yugoslavia J. A. Zoltewicz, Gainesville, Florida Advances in HETEROCYCLIC CHEMISTRY Edited by ALAN R. KATRITZKY, FRS Kenan Professor of Chemistry Department of Chemistry University of Florida Gainesville, Florida Volume 48 ACADEMIC PRESS, INC. Harcourt Brace Jovanovich, Publishers San Diego New York Boston London Sydney Tokyo Toronto This book is printed on acid-free paper. @ COPYRIGHT 0 1990 BY ACADEMIC PRESS, INC. All Rights Reserved. No part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopy, recording, or any information storage and retrieval system, without permission in writing from the publisher. ACADEMIC PRESS, INC. San Diego. California 92101 United Kingdom Edition published by ACADEMIC PRESS LIMITED 24-28 Oval Road, London NWl 7DX LIBRARY OF CONGRESS CATALOG CARD NUMBER: 62-13037 ISBN 0-12-020648-X (alk. paper) PRINTED IN THE UNITED STATES OF AMERICA 90919293 987654321 Contents PREFACE................................................................. vii Heteroaromatic Sulfoxides and Sulfones: Ligand Exchange and Coupling in Sulfuranes and Ipso-Substitutions SHICERUOAE AND NAOMICHIFURUKAWA I. Introduction .......................................................... I 11. Ligand Coupling and Ligand Exchange in u-Sulfuranes .................... 3 111. Ipso-Substitution of Azaaromatic Sulfoxides and Sulfones .................. 24 IV. Thione-Thiol Tautomerism and Its Application to Organic Synthesis .......
    [Show full text]
  • Full Technical Program 1 1 / 3 0 / 2 112/03/11 12:48 AM Instructions Index of Organizing Groups Program (Listing of Papers) Technical
    Full Technical Program Full Technical • Instructions • Index of Organizing Groups • Technical Program (Listing of Papers) AACS-ANAHEIM-11-0201-Onsite.inddCS-ANAHEIM-11-0201-Onsite.indd 5555 112/03/112/03/11 112:482:48 AAMM How to Read the Technical Program 1) Search for the Division (listed in alphabetical order). 2) Locate the day (Sunday, Monday, etc.). 3) Locate the time of day (morning, afternoon, evening). 4) Locate the session name and oral presentation start time or poster session duration. 5) Locate the venue and room for each session. FULL TECHNICAL PROGRAM wenty-nine of the society's techni- In addition to this technical program- are expected to attend the ever-popular cal divisions and seven commit- ming, there is one cross divisional Sci-Mix Interdivisional Poster Session Ttees are hosting original technical theme of Chemistry of Natural Resourc- & Mixer on Monday, March 28 from 8 programming during the meeting. More es that is contributed by numerous to 10 PM at the Anaheim Convention than 9,000 papers have been ac- ACS divisions. Each organizing group's Center. Approximately 600 noteworthy cepted for this meeting. ACS President programming is detailed on the poster presentations, networking with Nancy B. Jackson is cosponsoring following pages. More than 2,000 colleagues, and light refreshments two symposia during the meeting. chemical professionals and students make up this enjoyable event. Organizing Group Acronym Page Organizing Group Acronym Page Presidential & Cross-Division Programming Inorganic Chemistry INOR TECH-134
    [Show full text]
  • Jan Ježek Jan Hlaváček Jaroslav Šebestík Derivatives, Syntheses
    Progress in Drug Research 72 Series Editor: K.D. Rainsford Jan Ježek Jan Hlaváček Jaroslav Šebestík Biomedical Applications of Acridines Derivatives, Syntheses, Properties and Biological Activities with a Focus on Neurodegenerative Diseases Progress in Drug Research Volume 72 Series editor K.D. Rainsford, Sheffield Hallam University, Biomedical Research Centre, Sheffield, UK More information about this series at http://www.springer.com/series/4857 Jan Ježek • Jan Hlaváček Jaroslav Šebestík Biomedical Applications of Acridines Derivatives, Syntheses, Properties and Biological Activities with a Focus on Neurodegenerative Diseases 123 Jan Ježek Jaroslav Šebestík Academy of Sciences Academy of Sciences Institute of Organic Chemistry Institute of Organic Chemistry and Biochemistry and Biochemistry Prague Prague Czech Republic Czech Republic Jan Hlaváček Academy of Sciences Institute of Organic Chemistry and Biochemistry Prague Czech Republic ISSN 0071-786X ISSN 2297-4555 (electronic) Progress in Drug Research ISBN 978-3-319-63952-9 ISBN 978-3-319-63953-6 (eBook) DOI 10.1007/978-3-319-63953-6 Library of Congress Control Number: 2017947442 © Springer International Publishing AG 2017 This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use.
    [Show full text]
  • NIST Standard Reference Materials Catalog 1995-1996
    ST Special Publicatio U.S. DEPARTMENT ' OF COMMERCE^ Technology Adminiftration National Institute of Standards and Technology To Order - . tf Thomas E. Gills, Chief, Standard Reference Materials Program NET Standard Reference Materials Catalog 1995-96 NIST Special Publication 260 Nancy M. Trahey, Editor Standard Reference Materials Program National Institute of Standards and Technology Gaithersburg, MD 20899-0001 For Information or To Order Phone: (301) 975-OSRM (6776) Fax: (301) 948-3730 E-Mail: [email protected] See page 8 for Instructions U.S. DEPARTMENT OF COMMERCE Ronald H. Brown, Secretary Technology Administration Mary L. Good, Under Secretary for Technology National Institute of Standards and Technology Arati Prabhakar, Director Issued March 1995 National Institute of Standards and Technology Special Publication 260 Supersedes NIST Spec. Publ. 260, 1992-93 165 pages (March 1995) CODEN: XNBSAV U.S. GOVERNMENT PRINTING OFFICE WASHINGTON: 1995 For sale by the Superintendent of Documents U.S. Government Printing Office, Washington, DC 20402 SRM and the SRM Logo The term "Standard Reference Materials" (SRM) and the SRM logo "^^rn^>" are Federally registered trademarks of the National Institute of Standards and Technology and the Federal Govern- ment, who retain exclusive rights in the term. Permission to use the term and/or the logo is con- trolled by NIST as is the quality of the use of the term SRM and of the logo itself. Foreword The National Institute of Standards and Technology (NIST), formerly the National Bureau of Standards, was created by a Congressional act in 1901 to be the source and custodian of standards for physical measurement in the United States and charged with the responsibility for establishing a measurement foundation to facilitate both national and international commerce.
    [Show full text]
  • Orientation Reactions of Phenoxathiin and Its Derivatives Scott H
    Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 1955 Orientation reactions of phenoxathiin and its derivatives Scott H. idtE Iowa State College Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Organic Chemistry Commons Recommended Citation Eidt, Scott H., Or" ientation reactions of phenoxathiin and its derivatives " (1955). Retrospective Theses and Dissertations. 13430. https://lib.dr.iastate.edu/rtd/13430 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. NOTE TO USERS This reproduction is the best copy available. UMI I ORIENTATION REACTIONS OF PHENOXATHIIN AND ITS DERIVATIVES by Soott H. Eldt A Dissertation Submitted to the Graduate Faculty In Partial Fulfillment of The Requlrementfi for the Degree of DOCTOR OF PHILOSOPHY Major SubJejct; • .Org-aalc Chemistry Approved: Signature was redacted for privacy. In Charge of Major Work Signature was redacted for privacy. Head of Major Departmerrt Signature was redacted for privacy. htsttii ux u-x*eiuu«ive wuxlege Iowa state College 1955 UMI Number: DP12681 INFORMATION TO USERS The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleed-through, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted.
    [Show full text]
  • Naming and Indexing of Chemical Substances for Chemical Abstractstm
    Naming and Indexing of Chemical Substances for Chemical AbstractsTM 2007 Edition A publication of Chemical Abstracts Service Published by the American Chemical Society Naming and Indexing of Chemical Substances for Chemical AbstractsTM A publication of Chemical Abstracts Service Published by the American Chemical Society Copyright © 2008 American Chemical Society All Rights Reserved. Printed in the USA Inquiries concerning editorial content should be sent to: Editorial Office, Chemical Abstracts Service, 2540 Olentangy River Road, P.O. Box 3012, Columbus, Ohio 43210-0012 USA SUBSCRIPTION INFORMATION Questions about CAS products and services should be directed to: United States and Canada: CAS Customer Care Phone: 800-753-4227 (North America) 2540 Olentangy River Road 614-447-3700 (worldwide) P.O. Box 3012 Fax: 614-447-3751 Columbus, Ohio 43210-0012 USA E-mail: [email protected] Japan: JAICI (Japan Association for International Phone: 81-3-5978-3621 Chemical Information) Fax: 81-3-5978-3600 6-25-4 Honkomagome E-mail: [email protected] Bunkyo-ku, Tokyo Japan, 113-0021 Countries not named above: Contact CAS Customer Care, 2540 Olentangy River Road, P.O. Box 3012, Columbus, Ohio 43210-0012 USA; Telephone 614-447-3700; Fax 614-447-3751; E-mail [email protected]. For a list of toll-free numbers from outside North America, visit www.cas.org. 1 Naming and Indexing of Chemical Substances for Chemical Abstracts 2007 ¶ 102 NAMING AND INDEXING OF CHEMICAL SUBSTANCES 101. Foreword. Although the account which follows describes in consid- zwitterions (inner salts, sydnones). The changes for the Fourteenth (1997- erable detail the selection of substance names for Chemical Abstracts (CA) in- 2001) Collective Index period affect coordination nomenclature, stereochemi- dexes, it is not a nomenclature manual.
    [Show full text]