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Jeffrey D. Jensen Arizona State University Jeffrey.D.Jensen@Asu.Edu Jensen CV, April 2021 Jeffrey D. Jensen Arizona State University [email protected] http://jjensenlab.org EDUCATION 2002-2006 Ph.D. Cornell University, Genetics Advisors: Charles Aquadro, Carlos Bustamante 1998-2002 B.S./B.A. Univ. of Arizona, Evol. Biology / Anthropology Advisors: Michael Nachman, Brian Charlesworth PROFESSIONAL EXPERIENCE 2016- Professor Arizona State University, School of Life Sciences Center for Evolution & Medicine, Center for Mechanisms of Evolution 2011-2017 Assistant / Associate Professor Swiss Federal Institute of Technology (EPFL), School of Life Sciences 2009-2011 Assistant Professor Univ of Massachusetts Medical School, Program in Bioinformatics 2007-2009 NSF Biological Informatics Postdoctoral Fellow UC Berkeley / UC San Diego, Department of Integrative Biology Advisors: Doris Bachtrog, Peter Andolfatto, Rasmus Nielsen PROFESSIONAL SERVICE Editorial: 2016- Evolution, Associate Editor 2014-2018 Journal of Evolutionary Biology, Board Member 2014-2015 Molecular Ecology, Associate Editor 2014-2015 PLoS Computational Biology, Guest Editor 2012-2015 PLoS Genetics, Guest Editor 2011-2015 Frontiers, Associate Editor Review (funding): Austrian Science Fund, European Research Council, European Science Foundation, French National Research Agency, German Science Foundation, Human Frontier Science Program, Israeli Science Foundation, MacArthur Fellows Program, Polish National Science Centre, Swiss National Science Foundation, UK Biotechnology & Biological Sciences Research Council, UK Natural Environment Research Council, US National Institutes of Health, US National Science Foundation Jensen CV, April 2021 Review (journal): American Journal of Human Genetics, Annals of Human Genetics, Archives of Virology, Bioinformatics, BMC Evolutionary Biology, Evolution, Evolution Letters, Frontiers in Genetics, G3, Genetics, Genetics Research, Genetics Selection Evolution, Genome Biology, Genome Biology & Evolution, Genome Research, Heredity, Journal of Evolutionary Biology, Journal of Molecular Evolution, Molecular Biology & Evolution, Molecular Ecology, Molecular Ecology Resources, Nature, Nature Communications, Nature Ecology & Evolution, Nature Reviews Genetics, Nucleic Acids Research, Philosophical Transactions of the Royal Society B, Proceedings of the Royal Society, PNAS, PLoS Biology, PLoS Computational Biology, PLoS Genetics, PLoS One, Science, Science Advances, Scientific Reports, Statistical Physics Committees: Search: Faculty Search Committee: Mechanisms of Evolution (ASU) (2018-19) Faculty Search Committee: Mechanisms of Evolution (ASU) (2017-18) Faculty Search Committee: Ecology of Infectious Disease (ETH) (2013-14) Faculty Search Committee: Integrative Biology (UMass Med School) (2010-11) Advisory: Research Committee: Center for Evolution & Medicine (ASU) (2016-2018) Graduate Admissions Committee: Life Sciences (EPFL) (2013-2015) German Science Foundation, Rapid Evolutionary Adaptation Grant Panel (2015-16) Serbian Genetics Society, Scientific Advisor (2015) National Academy of Finland, Scientific Advisor (2013) Organizing: Arizona PopGroup (USA, 2016-present) ‘Clinically Relevant Population Genetics’ workshop (USA, 2017) ‘Theoretical & Empirical Evidence of Adaptation’ workshop (Switzerland, 2015) European Society for Evolutionary Biology Conference (Switzerland 2015) ‘Systems Genetics & Evolution’ workshop (Switzerland, 2015) ‘Bridging Theoretical & Experimental Evolution’ workshop (Switzerland, 2013) Thesis: Kevin Leempoel (Golay Lab, EPFL), Pierre-Yves Helleboid (Trono Lab, EPFL), Ana Bittencourt (Fellay Lab, EPFL), Piedro Refinetti (Morgenthaler Lab, EPFL), Sebastian Waszak (Deplancke Lab, EPFL), Andreas Massouras (Deplancke Lab, EPFL), Benjamin Zoller (Naef Lab, EPFL), Dominique Monteil (Wurm Lab, EPFL), Nicee Srivastava (Fasshauer Lab, Uni Lausanne), Ryan Hietpas (Bolon Lab, UMass Med), Alex Panzierra (Bertorelle Lab, Uni Ferrara), Adele Crane (Stone Lab, ASU), Mario Apata (Wilson Lab, ASU), Gaurav Bilolikar (Geiler-Samerotte Lab, ASU), Cyril Versoza (Pfeifer Lab, ASU), Man Lin (Lynch Lab, ASU), Mark Milhaven (Pfeifer Lab, ASU) Jensen CV, April 2021 TEACHING F/S, 2017 - current Population Genetics Reading Group (BIO 498/591), ASU F, 2017 - 2020 Research Areas of Evolution (EVO 610), Guest Lecturer, ASU S, 2018 Evolution (BIO 345), ASU S, 2012-2016 Statistical Population Genetics (BIO 366), EPFL F, 2014-2015 Scientific Literature Analysis (BIO 371), EPFL S, 2014-2015 A History of Evolutionary Thought (BIO 672), EPFL F, 2012-2014 Projects in Genomics & Bioinformatics (BIO 466), EPFL F, 2010-2011 Population Genetics Journal Club (BBS 741), UMass Med F, 2010-2011 Molecular Evolution (BBS 705), UMass Med ADVISING Postdoctoral 2021 - Vivak Soni 2018 - Parul Johri 2019 - 2021 Susanna Sabin (Government (CDC), USA) 2018 - 2020 Ana Morales-Arce (Postdoc, Uni Berne) 2019 - 2020 João Santos (Industry, Portugal) 2019 - 2020 Matt Jones (Government (USGS), USA) 2017 - 2019 Rebecca Harris (Industry, USA) 2017 - 2019 Andrew Sackman (Faculty, Washington & Lee) 2015 - 2017 Sebastian Matuszewski (Industry, Austria) 2014 - 2017 Stefan Laurent (Faculty, Max Planck-Koln) 2015 - 2017 Severine Vuilleumier (Faculty, HES-SO) 2011 - 2016 Nicholas Renzette (Industry, USA) 2015 - 2016 Valeria Montano (Postdoc, Uni St. Andrews) 2013 - 2015 Greg Ewing (Industry, New Zealand) 2012 - 2015 Claudia Bank (Faculty, Uni Berne) 2013 - 2015 Anna Ferrer Admettla (Industry, Spain) 2012 - 2014 Matthieu Foll (Faculty, WHO-Lyon) 2010 - 2014 Yu-Ping Poh (Industry, USA) 2013 - 2014 Cornelia Pokalyuk (Faculty, Uni Magdeburg) 2012 - 2013 Lisha Mathew (Industry, Germany) 2012 - 2013 Daniel Wegmann (Faculty, Uni Fribourg) Graduate 2013 - 2018 Mado Kapopoulou (Bioinformatician, Uni Berne) (Ph.D.) 2012 - 2017 Louise Ormond (Postdoc, UCL) 2009 - 2014 Alfred Simkin (Faculty, UMass Medical School) 2009 - 2013 Jessica Crisci (Industry, USA) Graduate 2016 - 2017 Marcel Hildebrandt (Industry, Germany) (M.S). 2016 - 2017 Stefano Tartini (Industry, Switzerland) 2012 - 2014 Hyunjin Shim (Postdoc, UC Berkeley) 2011 - 2013 Priyanka Sinha (Postdoc, Otago Univ) Jensen CV, April 2021 Staff 2019 - 2021 Kellen Riall (PhD student, Univ. of Chicago) 2014 - 2017 Kristen Irwin (Grants Administration, EPFL) 2012 - 2013 Shivani Mahajan (Industry, USA) Bachelor Projects: UMass (2009-11): Aslihan Dincer, Daniel Virgil, Guang Xu EPFL (2011-17): Luc Aeberli, Laurent Alter, Laure Cetre, Edouard Deckersberg, Anna Dussuet, Philippe Fabrice, Christopher Finelli, Anais Haget, Roger Kung, Marie Malier, Dariush Mollet, Mathieu Quinodoz, Pauline Reiff, Tamara Rossy, Stefano Tartini, Gaelle Thurre, Florian Widmer ASU (2017-current): Kellen Riall, Emma Howell, Andrew Hopkins Sabbatical & Study Abroad Visitors 2016 Matt Jones (PhD Student, Univ of Montana), Study Abroad 2014 Derek Setter (PhD Student, Univ Vienna), Study Abroad 2012 Daniel Bolon, (Professor, UMass Medical School), Sabbatical FUNDING & AWARDS 2021-2026 U.S. National Institutes of Health, NIGMS, R35 'Established Investigator MIRA' PI On differentiating selective and neutral evolutionary processes 2019-2024 U.S. National Institutes of Health, NIAID, P01 co-I (with: S. Permar, T. Kowalik, A. Kaur, P. Barry, S. Pfeifer) Immunologic and virologic determinants of CMV transmission 2019-2022 U.S. National Institutes of Health, NIGMS/DMS, R01 PI Novel coalescent approaches for the study of virus evolution 2015-2020 U.S. Department of the Army, DARPA co-I (with: R. Finberg, C. Schiffer, D. Bolon, T. Kowalik, J. Wang) Anticipating influenza resistance evolution 2017-2018 Illumina Innovative Investigators program co-I (with: T. Kowalik, S. Pfeifer, B. Trumble) Characterizing HCMV infections in native Bolivian populations 2017-2018 Center for Evolution & Medicine, Venture Fund co-I (with: S. Pfeifer, B. Trumble) The evolutionary history of HCMV in native Americans Jensen CV, April 2021 2015-2018 Swiss National Science Foundation PI The population genetics of adaptation (renewal) 2013-2018 European Research Council PI Theoretical, empirical, & computational tools in evolution 2012-2015 Swiss National Science Foundation PI The population genetics of adaptation 2012-2015 Swiss National Science Foundation co-I (with: H. Hoekstra, L. Excoffier) Genetic basis of adaptive change in camouflaged deer mice 2011-2014 DARPA co-I (with: R. Finberg, J. Wang, T. Kowalik, D. Bolon, C. Schiffer) Algorithms to limit viral epidemics 2010-2011 U.S. National Science Foundation PI The population genetics of adaptation 2010-2011 Worcester Foundation for Biomedical Research PI Method developments: searching for selection 2006-2008 U.S. National Science Foundation Biological Informatics Postdoc Fellowship Identifying cis-acting binding sites for dosage compensation INVITED LECTURES 2021 University of Berne (Switzerland) 2020 Ohio State University (USA); University of Edinburgh (UK) 2019 University of Wisconsin - Madison (USA); 'Evolutionary Genetics of Infectious Disease' symposium (Canada); Midwestern University, College of Veterinary Medicine (USA) 2018 Cornell University (USA); Max Planck Institute for Plant Breeding Research (Germany) Jensen CV, April 2021 2017 University of Arizona, Quantitative Biology Colloquium (USA); University of Montana (USA); Arizona PopGroup (USA); ‘Clinically Relevant Population Genetics’ workshop (USA) 2016 Swiss Institute of Bioinformatics Symposium (Switzerland); University of Basel (Switzerland); Max Planck Institute for the Science of Human History (Germany); Mathematical and Computational Evolutionary Biology
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