Acetic Acid Bacteria in the Food Industry: Systematics, Characteristics and Applications
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Asaia Bogorensis Gen. Nov., Sp. Nov., an Unusual Acetic Acid Bacterium in the Α-Proteobacteria
International Journal of Systematic and Evolutionary Microbiology (2000) 50, 823–829 Printed in Great Britain Asaia bogorensis gen. nov., sp. nov., an unusual acetic acid bacterium in the α-Proteobacteria Yuzo Yamada,1 Kazushige Katsura,1 Hiroko Kawasaki,2 Yantyati Widyastuti,3 Susono Saono,3 Tatsuji Seki,2 Tai Uchimura1 and Kazuo Komagata1 Author for correspondence: Yuzo Yamada. Tel\Fax: j81 54 635 2316. 1 Laboratory of General and Eight Gram-negative, aerobic, rod-shaped and peritrichously flagellated strains Applied Microbiology, were isolated from flowers of the orchid tree (Bauhinia purpurea) and of Department of Applied Biology and Chemistry, plumbago (Plumbago auriculata), and from fermented glutinous rice, all Faculty of Applied collected in Indonesia. The enrichment culture approach for acetic acid bacteria Bioscience, Tokyo was employed, involving use of sorbitol medium at pH 35. All isolates grew University of Agriculture, Sakuragaoka 1-1-1, well at pH 30 and 30 SC. They did not oxidize ethanol to acetic acid except for Setagaya-ku, one strain that oxidized ethanol weakly, and 035% acetic acid inhibited their Tokoyo 156-8502, Japan growth completely. However, they oxidized acetate and lactate to carbon 2 The International Center dioxide and water. The isolates grew well on mannitol agar and on glutamate for Biotechnology, Osaka agar, and assimilated ammonium sulfate for growth on vitamin-free glucose University, Yamadaoka 2-1, Suita, Osaka 565-0871, medium. The isolates produced acid from D-glucose, D-fructose, L-sorbose, Japan dulcitol and glycerol. The quinone system was Q-10. DNA base composition 3 Research and ranged from 593to610 mol% GMC. -
Kombucha Tea As a Reservoir of Cellulose Producing Bacteria: Assessing Diversity Among Komagataeibacter Isolates
applied sciences Article Kombucha Tea as a Reservoir of Cellulose Producing Bacteria: Assessing Diversity among Komagataeibacter Isolates Salvatore La China , Luciana De Vero , Kavitha Anguluri, Marcello Brugnoli, Dhouha Mamlouk and Maria Gullo * Department of Life Sciences, University of Modena and Reggio Emilia, 42122 Reggio Emilia, Italy; [email protected] (S.L.C.); [email protected] (L.D.V.); [email protected] (K.A.); [email protected] (M.B.); [email protected] (D.M.) * Correspondence: [email protected] Abstract: Bacterial cellulose (BC) is receiving a great deal of attention due to its unique properties such as high purity, water retention capacity, high mechanical strength, and biocompatibility. However, the production of BC has been limited because of the associated high costs and low productivity. In light of this, the isolation of new BC producing bacteria and the selection of highly productive strains has become a prominent issue. Kombucha tea is a fermented beverage in which the bacteria fraction of the microbial community is composed mostly of strains belonging to the genus Komagataeibacter. In this study, Kombucha tea production trials were performed starting from a previous batch, and bacterial isolation was conducted along cultivation time. From the whole microbial pool, 46 isolates were tested for their ability to produce BC. The obtained BC yield ranged from 0.59 g/L, for the isolate K2G36, to 23 g/L for K2G30—which used as the reference strain. The genetic intraspecific diversity of the 46 isolates was investigated using two repetitive-sequence-based PCR typing methods: the enterobacterial repetitive intergenic consensus (ERIC) elements and the (GTG)5 sequences, Citation: La China, S.; De Vero, L.; respectively. -
Adhesion of <I>Asaia</I> <I>Bogorensis</I> To
1186 Journal of Food Protection, Vol. 78, No. 6, 2015, Pages 1186–1190 doi:10.4315/0362-028X.JFP-14-440 Copyright G, International Association for Food Protection Research Note Adhesion of Asaia bogorensis to Glass and Polystyrene in the Presence of Cranberry Juice HUBERT ANTOLAK,* DOROTA KREGIEL, AND AGATA CZYZOWSKA Institute of Fermentation Technology and Microbiology, Lodz University of Technology, Wolczanska 171/173, 90-924 Lodz, Poland MS 14-440: Received 10 September 2014/Accepted 29 January 2015 Downloaded from http://meridian.allenpress.com/jfp/article-pdf/78/6/1186/1686447/0362-028x_jfp-14-440.pdf by guest on 02 October 2021 ABSTRACT The aim of the study was to evaluate the adhesion abilities of the acetic acid bacterium Asaia bogorensis to glass and polystyrene in the presence of American cranberry (Vaccinium macrocarpon) juice. The strain of A. bogorensis used was isolated from spoiled commercial fruit-flavored drinking water. The cranberry juice was analyzed for polyphenols, organic acids, and carbohydrates using high-performance liquid chromatography and liquid chromatography–mass spectrometry techniques. The adhesive abilities of bacterial cells in culture medium supplemented with cranberry juice were determined using luminometry and microscopy. The viability of adhered and planktonic bacterial cells was determined by the plate count method, and the relative adhesion coefficient was calculated. This strain of A. bogorensis was characterized by strong adhesion properties that were dependent upon the type of surface. The highest level of cell adhesion was found on the polystyrene. However, in the presence of 10% cranberry juice, attachment of bacterial cells was three times lower. Chemical analysis of juice revealed the presence of sugars, organic acids, and anthocyanins, which were identified as galactosides, glucosides, and arabinosides of cyanidin and peonidin. -
Kombucha: a Novel Model System for Cooperation and Conflict in A
Kombucha: a novel model system for cooperation and conflict in a complex multi-species microbial ecosystem Alexander May1,2, Shrinath Narayanan3, Joe Alcock4, Arvind Varsani1,5,6,7, Carlo Maley1,3 and Athena Aktipis2,3,5,7 1 School of Life Sciences, Arizona State University, Tempe, AZ, USA 2 Department of Psychology, Arizona State University, Tempe, AZ, USA 3 The Biodesign Center for Biocomputing, Security and Society, Arizona State University, Tempe, AZ, USA 4 University of New Mexico, Albuquerque, NM, USA 5 The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ, USA 6 Structural Biology Research Unit, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa 7 Center for Evolution and Medicine, Arizona State University, Tempe, AZ, USA ABSTRACT Kombucha, a fermented tea beverage with an acidic and effervescent taste, is composed of a multispecies microbial ecosystem with complex interactions that are characterized by both cooperation and conflict. In kombucha, a complex community of bacteria and yeast initiates the fermentation of a starter tea (usually black or green tea with sugar), producing a biofilm that covers the liquid over several weeks. This happens through several fermentative phases that are characterized by cooperation and competition among the microbes within the kombucha solution. Yeast produce invertase as a public good that enables both yeast and bacteria to metabolize sugars. Bacteria produce a surface biofilm which may act as a public good providing protection from invaders, storage for resources, and greater access to oxygen for microbes embedded within it. -
Supplementary Information for Microbial Electrochemical Systems Outperform Fixed-Bed Biofilters for Cleaning-Up Urban Wastewater
Electronic Supplementary Material (ESI) for Environmental Science: Water Research & Technology. This journal is © The Royal Society of Chemistry 2016 Supplementary information for Microbial Electrochemical Systems outperform fixed-bed biofilters for cleaning-up urban wastewater AUTHORS: Arantxa Aguirre-Sierraa, Tristano Bacchetti De Gregorisb, Antonio Berná, Juan José Salasc, Carlos Aragónc, Abraham Esteve-Núñezab* Fig.1S Total nitrogen (A), ammonia (B) and nitrate (C) influent and effluent average values of the coke and the gravel biofilters. Error bars represent 95% confidence interval. Fig. 2S Influent and effluent COD (A) and BOD5 (B) average values of the hybrid biofilter and the hybrid polarized biofilter. Error bars represent 95% confidence interval. Fig. 3S Redox potential measured in the coke and the gravel biofilters Fig. 4S Rarefaction curves calculated for each sample based on the OTU computations. Fig. 5S Correspondence analysis biplot of classes’ distribution from pyrosequencing analysis. Fig. 6S. Relative abundance of classes of the category ‘other’ at class level. Table 1S Influent pre-treated wastewater and effluents characteristics. Averages ± SD HRT (d) 4.0 3.4 1.7 0.8 0.5 Influent COD (mg L-1) 246 ± 114 330 ± 107 457 ± 92 318 ± 143 393 ± 101 -1 BOD5 (mg L ) 136 ± 86 235 ± 36 268 ± 81 176 ± 127 213 ± 112 TN (mg L-1) 45.0 ± 17.4 60.6 ± 7.5 57.7 ± 3.9 43.7 ± 16.5 54.8 ± 10.1 -1 NH4-N (mg L ) 32.7 ± 18.7 51.6 ± 6.5 49.0 ± 2.3 36.6 ± 15.9 47.0 ± 8.8 -1 NO3-N (mg L ) 2.3 ± 3.6 1.0 ± 1.6 0.8 ± 0.6 1.5 ± 2.0 0.9 ± 0.6 TP (mg -
Deep Divergence and Rapid Evolutionary Rates in Gut-Associated Acetobacteraceae of Ants Bryan P
Brown and Wernegreen BMC Microbiology (2016) 16:140 DOI 10.1186/s12866-016-0721-8 RESEARCH ARTICLE Open Access Deep divergence and rapid evolutionary rates in gut-associated Acetobacteraceae of ants Bryan P. Brown1,2 and Jennifer J. Wernegreen1,2* Abstract Background: Symbiotic associations between gut microbiota and their animal hosts shape the evolutionary trajectories of both partners. The genomic consequences of these relationships are significantly influenced by a variety of factors, including niche localization, interaction potential, and symbiont transmission mode. In eusocial insect hosts, socially transmitted gut microbiota may represent an intermediate point between free living or environmentally acquired bacteria and those with strict host association and maternal transmission. Results: We characterized the bacterial communities associated with an abundant ant species, Camponotus chromaiodes. While many bacteria had sporadic distributions, some taxa were abundant and persistent within and across ant colonies. Specially, two Acetobacteraceae operational taxonomic units (OTUs; referred to as AAB1 and AAB2) were abundant and widespread across host samples. Dissection experiments confirmed that AAB1 and AAB2 occur in C. chromaiodes gut tracts. We explored the distribution and evolution of these Acetobacteraceae OTUs in more depth. We found that Camponotus hosts representing different species and geographical regions possess close relatives of the Acetobacteraceae OTUs detected in C. chromaiodes. Phylogenetic analysis revealed that AAB1 and AAB2 join other ant associates in a monophyletic clade. This clade consists of Acetobacteraceae from three ant tribes, including a third, basal lineage associated with Attine ants. This ant-specific AAB clade exhibits a significant acceleration of substitution rates at the 16S rDNA gene and elevated AT content. -
Acetobacter Sacchari Sp. Nov., for a Plant Growth-Promoting Acetic Acid Bacterium Isolated in Vietnam
Annals of Microbiology (2019) 69:1155–11631163 https://doi.org/10.1007/s13213-019-01497-0 ORIGINAL ARTICLE Acetobacter sacchari sp. nov., for a plant growth-promoting acetic acid bacterium isolated in Vietnam Huong Thi Lan Vu1,2 & Pattaraporn Yukphan3 & Van Thi Thu Bui1 & Piyanat Charoenyingcharoen3 & Sukunphat Malimas4 & Linh Khanh Nguyen1 & Yuki Muramatsu5 & Naoto Tanaka6 & Somboon Tanasupawat7 & Binh Thanh Le2 & Yasuyoshi Nakagawa5 & Yuzo Yamada3,8,9 Received: 21 January 2019 /Accepted: 7 July 2019 /Published online: 18 July 2019 # Università degli studi di Milano 2019 Abstract Purpose Two bacterial strains, designated as isolates VTH-Ai14T and VTH-Ai15, that have plant growth-promoting ability were isolated during the study on acetic acid bacteria diversity in Vietnam. The phylogenetic analysis based on 16S rRNA gene sequences showed that the two isolates were located closely to Acetobacter nitrogenifigens RG1T but formed an independent cluster. Methods The phylogenetic analysis based on 16S rRNA gene and three housekeeping genes’ (dnaK, groEL, and rpoB) sequences were analyzed. The genomic DNA of the two isolates, VTH-Ai14T and VTH-Ai15, Acetobacter nitrogenifigens RG1T, the closest phylogenetic species, and Acetobacter aceti NBRC 14818T were hybridized and calculated the %similarity. Then, phenotypic and chemotaxonomic characteristics were determined for species’ description using the conventional method. Results The 16S rRNA gene and concatenated of the three housekeeping genes phylogenetic analysis suggests that the two isolates were constituted in a species separated from Acetobacter nitrogenifigens, Acetobacter aceti,andAcetobacter sicerae. The two isolates VTH-Ai14T and VTH-Ai15 showed 99.65% and 98.65% similarity of 16S rRNA gene when compared with Acetobacter nitrogenifigens and Acetobacter aceti and they were so different from Acetobacter nitrogenifigens RG1T with 56.99 ± 3.6 and 68.15 ± 1.8% in DNA-DNA hybridization, when isolates VTH-Ai14T and VTH-Ai15 were respectively labeled. -
And Acetobacter Pornorurn Spm Nov., Two New Species Isolated from Industrial Vinegar Fermentations
International Journal of Systematic Bacteriology (1 998),48, 93 5-940 Printed in Great Britain Description of Acetobacter oboediens Spm nov, and Acetobacter pornorurn Spm nov., two new species isolated from industrial vinegar fermentations Stephan J. Sokollek, Christian HerteI and Walter P. Hammes Author for correspondence: Walter P. Hammes. Tel: +49 71 1 459 2305. Fax: +49 71 1 459 4255. e-mail: [email protected] lnstitut fur Two strains of Acetobacter sp., LTH 2460Tand LTH 2458T, have been isolated Lebensmitteltechnologie, from running red wine and cider vinegar fermentations, respectively. Universitat Hohenheim, GarbenstraBe 28, D-70599 Taxonomic characteristics of the isolates were investigated. Comparative Stuttg a rt, Germany analysis of the 165 rRNA sequences revealed > 99% similarity between strain LTH 2460Tand the type strains of the related species Acetobacter europaeus and Acetobacter xylinus and between strain LTH 2458Tand Acetobacter pasteurianus. On the other hand, low levels of DNA relatedness (< 34%) were determined in DNA-DNA similarity studies. This relatedness below the species level was consistent with specific physiological characteristics permitting clear identification of these strains within established species of acetic acid bacteria. Based on these results, the names Acetobacter oboediens sp. nov. and Acetobacterpomorum sp. nov. are proposed for strains LTH 2460Tand LTH 2458T, respectively. The phylogenetic positions of the new species are reflected by a 165 rRNA-based tree. Furthermore, a 165 rRNA-targeted oligonucleotide probe specific for A. oboediens was constructed. Keywords: Acetobacter oboediens sp. nov., Acetobacter pomorum sp. nov., vinegar fermentation, acetic acid bacteria INTRODUCTION isolated from vinegar fermentations are not suitable for preservation (Sievers & Teuber, 1995). -
Screening of Acetic Acid Producing Microorganisms from Decomposed Fruits for Vinegar Production
Advances in Microbiology, 2015, 5, 291-297 Published Online May 2015 in SciRes. http://www.scirp.org/journal/aim http://dx.doi.org/10.4236/aim.2015.55028 Screening of Acetic Acid Producing Microorganisms from Decomposed Fruits for Vinegar Production Farzana Diba1, Fahmida Alam1,2, Ali Azam Talukder1* 1Department of Microbiology, Jahangirnagar University, Dhaka, Bangladesh 2Human Genome Centre, School of Medical Sciences, Universiti Sains Malaysia, Kubang Kerian, Malaysia Email: *[email protected], [email protected] Received 11 February 2015; accepted 5 May 2015; published 7 May 2015 Copyright © 2015 by authors and Scientific Research Publishing Inc. This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/ Abstract Acetic acid bacteria capable of growing at 30˚C - 37˚C were collected from various decomposed fruits available in Bangladeshi local markets in order to assess their suitability for vinegar pro- duction. Initially, 42 microorganisms were isolated from decomposed fruits like grapes, mangoes, pineapples, oranges, safeda etc. during summer when temperature reaches up to 37˚C. Then their growths were checked in YPG medium containing various ethanol concentrations at different time point at 37˚C. From the preliminary screening, 15 Gram negative bacterial isolates have produced halos or yellow zone around the colonies on YPG agar plate at 37˚C which indicated acetic acid production capability by those bacteria. Furthermore, acetic acid production rates were deter- mined by titration method and about 3 - 6.9 gm/100ml acetic acid were estimated by using 4% ethanol at 37˚C by shaking culture for 3 days. -
Influence of Lab Adapted Natural Diet, Genotype, and Microbiota On
INFLUENCE OF LAB ADAPTED NATURAL DIET, GENOTYPE, AND MICROBIOTA ON DROSOPHILA MELANOGASTER LARVAE by ANDREI BOMBIN LAURA K. REED, COMMITTEE CHAIR JULIE B. OLSON JOHN H. YODER STANISLAVA CHTARBANOVA-RUDLOFF CASEY D. MORROW A DISSERTATION Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Biological Sciences in the Graduate School of The University of Alabama TUSCALOOSA, ALABAMA 2020 Copyright Andrei Bombin 2020 ALL RIGHTS RESERED ABSTRACT Obesity is an increasing pandemic and is caused by multiple factors including genotype, psychological stress, and gut microbiota. Our project investigated the effects produced by microbiota community, acquired from the environment and horizontal transfer, on traits related to obesity. The study applied a novel approach of raising Drosophila melanogaster, from ten wild-derived genetic lines on naturally fermented peaches, preserving genuine microbial conditions. Larvae raised on the natural and standard lab diets were significantly different in every tested phenotype. Frozen peach food provided nutritional conditions similar to the natural ones and preserved key microbial taxa necessary for survival and development. On the peach diet, the presence of parental microbiota increased the weight and development rate. Larvae raised on each tested diet formed microbial communities distinct from each other. In addition, we evaluated the change in microbial communities and larvae phenotypes due to the high fat and high sugar diet modifications. We observed that presence of symbiotic microbiota often mitigated the effect that harmful dietary modifications produced on larvae and was crucial for Drosophila survival on high sugar peach diets. Although genotype of the host was the most influential factor shaping the microbiota community, several dominant microbial taxa were consistently associated with nutritional modifications across lab and peach diets. -
Genomic Diversity Landscape of the Honey Bee Gut Microbiota
ARTICLE https://doi.org/10.1038/s41467-019-08303-0 OPEN Genomic diversity landscape of the honey bee gut microbiota Kirsten M. Ellegaard 1 & Philipp Engel 1 The structure and distribution of genomic diversity in natural microbial communities is largely unexplored. Here, we used shotgun metagenomics to assess the diversity of the honey bee gut microbiota, a community consisting of few bacterial phylotypes. Our results show that 1234567890():,; most phylotypes are composed of sequence-discrete populations, which co-exist in individual bees and show age-specific abundance profiles. In contrast, strains present within these sequence-discrete populations were found to segregate into individual bees. Consequently, despite a conserved phylotype composition, each honey bee harbors a distinct community at the functional level. While ecological differentiation seems to facilitate coexistence at higher taxonomic levels, our findings suggest that, at the level of strains, priority effects during community assembly result in individualized profiles, despite the social lifestyle of the host. Our study underscores the need to move beyond phylotype-level characterizations to understand the function of this community, and illustrates its potential for strain-level analysis. 1 Department of Fundamental Microbiology, University of Lausanne, 1015 Lausanne, Switzerland. Correspondence and requests for materials should be addressed to K.M.E. (email: [email protected]) or to P.E. (email: [email protected]) NATURE COMMUNICATIONS | (2019) 10:446 | https://doi.org/10.1038/s41467-019-08303-0 | www.nature.com/naturecommunications 1 ARTICLE NATURE COMMUNICATIONS | https://doi.org/10.1038/s41467-019-08303-0 ost bacteria live in genetically diverse and highly com- same species name22. -
Isolation and Characterization of Acetobacter Aceti from Rotten Papaya
J. Bangladesh Agril. Univ. 13(2): 299–306, 2015 ISSN 1810-3030 Isolation and characterization of Acetobacter aceti from rotten papaya J. Kowser*, M. G. Aziz and M. B. Uddin Department of Food Technology and Rural Industries, Bangladesh Agricultural University, Mymensingh-2202, Bangladesh, *Email: [email protected] Abstract The present study was concerned with the isolation and characterization of Acetobacter aceti from rotten papaya for vinegar production. The samples were inoculated in sterilized GYC standard media and then incubated at 30°C for 48 hours. Successive subculture was performed to screen out the strains. In Gram’s staining, the morphology of the isolated bacteria exhibited pink, small rod shaped single, pair and chain in arrangement, in the hanging drops technique, all the isolates revealed motile. Biochemical tests were performed by fermentation of five basic sugars by producing both acid and gas bubbles in Durham tube. All of the isolates were Indole, Voges-Proskauer (VP) and Oxidase negative, Methyl Red (MR) and Catalase positive. The growth rate of isolated strain was optimized by weighing dry cell and turbidity at 600 nm at different concentrations of dextrose (1%, 5% and 10%). Ten (10) percent dextrose solution showed rapid growth and higher cell mass than 5% and 1% solution respectively. Acidity of the media gradually increased from 0.102% to 2.18% from day 0 to day 7 and pH of the media decreased from 6.8 to 5.5 during the period. This protocol was successful for enriching Acetobacter aceti, which was essential for vinegar production. Keywords: Rotten Papaya, Acetobacter aceti, GYC culture media, Morphological and Biochemical assessment Introduction Acetic acid bacteria (AAB) is a group of gram-negative, aerobic and motile rods that carry out incomplete oxidation of alcohol and sugars, leading to the accumulation of organic acids as end products.