Photoprotective Properties of Eumelanin: Computational Insights Into the Photophysics of a Catechol:Quinone Heterodimer Model System
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The Role of Norrish Type-I Chemistry in Photoactive Drugs: an Ab Initio Study of a Cyclopropenone-Enediyne Drug Precursor
Leger, S. J., Marchetti, B., Ashfold, M. N. R., & Karsili, T. N. V. (2020). The Role of Norrish Type-I Chemistry in Photoactive Drugs: An ab initio Study of a Cyclopropenone-Enediyne Drug Precursor. Frontiers in Chemistry, 8, [596590]. https://doi.org/10.3389/fchem.2020.596590 Publisher's PDF, also known as Version of record License (if available): CC BY Link to published version (if available): 10.3389/fchem.2020.596590 Link to publication record in Explore Bristol Research PDF-document This is the final published version of the article (version of record). It first appeared online via Fromtiers Media at https://doi.org/10.3389/fchem.2020.596590. Please refer to any applicable terms of use of the publisher. University of Bristol - Explore Bristol Research General rights This document is made available in accordance with publisher policies. Please cite only the published version using the reference above. Full terms of use are available: http://www.bristol.ac.uk/red/research-policy/pure/user-guides/ebr-terms/ ORIGINAL RESEARCH published: 22 December 2020 doi: 10.3389/fchem.2020.596590 The Role of Norrish Type-I Chemistry in Photoactive Drugs: An ab initio Study of a Cyclopropenone-Enediyne Drug Precursor Spencer J. Léger 1,2, Barbara Marchetti 1, Michael N. R. Ashfold 3 and Tolga N. V. Karsili 1* 1 Department of Chemistry, University of Louisiana at Lafayette, Lafayette, LA, United States, 2 Department of Chemical Engineering, University of Louisiana at Lafayette, Lafayette, LA, United States, 3 School of Chemistry, University of Bristol, Bristol, United Kingdom We present a contemporary mechanistic description of the light-driven conversion of cyclopropenone containing enediyne (CPE) precusors to ring-opened species amenable to further Bergman cyclization and formation of stable biradical species that have been proposed for use in light-induced cancer treatment. -
Possible Gas-Phase Syntheses for Seven Neutral Molecules Studied Recently with the Green Bank Telescope
A&A 474, 521–527 (2007) Astronomy DOI: 10.1051/0004-6361:20078246 & c ESO 2007 Astrophysics Possible gas-phase syntheses for seven neutral molecules studied recently with the Green Bank Telescope D. Quan1 and E. Herbst2 1 Chemical Physics Program, The Ohio State University, Columbus, Ohio 43210, USA e-mail: [email protected] 2 Departments of Physics, Chemistry and Astronomy, The Ohio State University, Columbus, OH 43210, USA Received 9 July 2007 / Accepted 17 August 2007 ABSTRACT Aims. With the Green Bank telescope (GBT), seven neutral molecules have been newly detected or confirmed towards either the cold interstellar core TMC-1 or the hot core source Sgr B2(N) within the last 1–2 years. Towards TMC-1, the new molecules seen are cyanoallene (CH2CCHCN) and methyl triacetylene (CH3C6H) while methyl cyanoacetylene (CH3CCCN) and methyl cyanodiacety- lene (CH3C5N) were confirmed. Towards Sgr B2(N), the three newly detected molecules are cyclopropenone (c-C3H2O), ketenimine (CH2CNH), and acetamide (CH3CONH2); these are mainly seen in absorption and are primarily located in an envelope around the hot core. In this work, we report a detailed study of the gas-phase chemistry of all seven molecules. Methods. Starting with our updated gas-phase chemical reaction network osu.01.2007, we added formation and depletion reactions to treat the chemistry of each of the seven molecules. Some of these were already in our network but with incomplete chemistry, while most were not in the network at all prior to this work. We assumed the standard physical conditions for TMC-1 and assumed that these also hold for the envelope around Sgr B2(N). -
Formation Mechanism of C60 Under Nonequilibrium and Irreversible
This article was downloaded by: [Eiji Osawa] On: 14 May 2012, At: 15:10 Publisher: Taylor & Francis Informa Ltd Registered in England and Wales Registered Number: 1072954 Registered office: Mortimer House, 37-41 Mortimer Street, London W1T 3JH, UK Fullerenes, Nanotubes and Carbon Nanostructures Publication details, including instructions for authors and subscription information: http://www.tandfonline.com/loi/lfnn20 Formation Mechanism of C60 under Nonequilibrium and Irreversible Conditions — An Annotation a Eiji Ōsawa a NanoCarbon Research Institute, AREC, Shinshu University, Nagano, Japan Available online: 14 May 2012 To cite this article: Eiji Ōsawa (2012): Formation Mechanism of C60 under Nonequilibrium and Irreversible Conditions — An Annotation, Fullerenes, Nanotubes and Carbon Nanostructures, 20:4-7, 299-309 To link to this article: http://dx.doi.org/10.1080/1536383X.2012.655104 PLEASE SCROLL DOWN FOR ARTICLE Full terms and conditions of use: http://www.tandfonline.com/page/terms-and-conditions This article may be used for research, teaching, and private study purposes. Any substantial or systematic reproduction, redistribution, reselling, loan, sub-licensing, systematic supply, or distribution in any form to anyone is expressly forbidden. The publisher does not give any warranty express or implied or make any representation that the contents will be complete or accurate or up to date. The accuracy of any instructions, formulae, and drug doses should be independently verified with primary sources. The publisher shall not be liable for any loss, actions, claims, proceedings, demand, or costs or damages whatsoever or howsoever caused arising directly or indirectly in connection with or arising out of the use of this material. -
Investigation of Au Sams Photoclick Derivatization by PM-IRRAS Wilson Luoa, Sydney M
Investigation of Au SAMs Photoclick Derivatization by PM-IRRAS Wilson Luoa, Sydney M. Leggea, Johnny Luob,c, François Lagugné-Labarthet*a, and Mark S. Wor- kentin*a aDepartment of Chemistry and the Centre for Materials and Biomaterials Research, Western University, 1151 Rich- mond Street, London, ON, N6A 5B7, Canada. bDepartment of Biochemistry, Western University, London, Ontario N6A 5C1, Canada. cLawson Health Research Institute, London, Ontario N6C 2R5, Canada. ABSTRACT: In this work we present a clean one-step process for modifying headgroups of self-assembled monolayers (SAMs) on gold using photo-enabled click chemistry. A thiolated, cyclopropenone-caged strained alkyne precursor was first functionalized onto a flat gold substrate through self-assembly. Exposure of the cyclopropenone SAM to UV-A light initi- ated the efficient photochemical decarbonylation of the cyclopropenone moiety, revealing the strained alkyne capable of undergoing the interfacial strain-promoted alkyne-azide cycloaddition (SPAAC). Irradiated SAMs were derivatized with a series of model azides with varied hydrophobicity to demonstrate the generality of this chemical system for the modification and fine-tuning of the surface chemistry on gold substrates. SAMs were characterized at each step with polarization-mod- ulation infrared reflection-absorption spectroscopy (PM-IRRAS) to confirm successful functionalization and reactivity. Fur- thermore, to showcase the compatibility of this approach with biochemical applications, cyclopropenone SAMs were irra- diated and modified with azide-bearing cell adhesion peptides to promote human fibroblast cell adhesion, then imaged by live cell fluorescence microscopy. Thus, the “photoclick” methodology reported here represents an improved, versatile, catalyst-free protocol that allows for a high degree of control over the modification of material surfaces, with applicability in materials science as well as biochemistry. -
Design, Synthesis and Reactivity of Cyclopropenone
DESIGN, SYNTHESIS AND REACTIVITY OF CYCLOPROPENONE- CONTAINING NINE MEMBERED CYCLIC ENEDIYNE AND ENYNE-ALLENE PRECURSORS AS PROTOTYPE PHOTOSWITCHABLE ANTITUMOR AGENTS by DINESH R. PANDITHAVIDANA (Under the Direction of Vladimir V. Popik) ABSTRACT The extreme cytotoxicity of natural enediyne antibiotics is attributed to the ability of the ( Z)-3-hexene-1,5-diyne (enediyne) and ( Z)-1,2,4-heptatrien-6-yne (enyne–allene) fragments incorporated into a 10- or 9-membered ring cyclic system to undergo cycloaromatization producing dDNA-damaging 1,4-diradicals. The rate of cyclization of enediynes to p-benzynes strongly depends on the distance between acetylenic termini, which in turn can be controlled by the ring size. Thus, 11-membered ring enediynes are stable, 10-membered ring analogs undergo slow cycloaromatization under ambient conditions or mild heating, 9- membered ring enediynes are virtually unknown and believed to undergo very fast spontaneous cyclization. Cyclic enyne-allenes have not been synthesized so far due to very facile Myers-Saito cyclization. We have developed thermally stable photo-precursors of 9-membered enediynes ( 2.22 , 2.26 ) and enyne-allene ( 2.44 ), in which one of the triple bonds is replaced by the cyclopropenone group. UV irradiation of 2.14 results in the efficient decarbonylation (Φ 254 = 0.34) and the formation of reactive enediyne 2.22. The latter undergoes clean cycloaromatization to 2,3-dihydro-1H- cyclopenta[b]naphthalen-1-ol ( 2.24 ) with a life-time of ca. 2 h in 2-propanol at 25 °C. The rate of this reaction depends linearly on the concentration of hydrogen donor and shows a primary kinetic isotope effect in 2-propanol-d8. -
Multidimensional Dynamics Involving a Conical Intersection: Wavepacket Calculations Using the MCTDH Method
Multidimensional dynamics involving a conical intersection: Wavepacket calculations using the MCTDH method G. A. Worth†, H.-D. Meyer∗, and L. S. Cederbaum∗ ∗ Theoretical Chemistry, University of Heidelberg, INF 229, 69120 Heidelberg, Germany † Dept. of Chemistry, King’s College London, The Strand, London, WC2R 2LS, U.K. This article will appear in Conical Intersections, W. Domcke, D. R. Yarkony, and H. K¨oppel, Eds., World Scientific Co., (Singapore, 2004), pp. 573–607. June 1, 2004 1 Introduction The time-evolution of a molecular system through a conical intersection is multi- dimensional in nature, i.e. its description cannot be reduced to a single reaction coordinate. In addition to this, such processes are inherently quantum mechan- ical due to the mixing of electronic states as the intersection is traversed, and a powerful quantum dynamics method is required to treat these, often large, systems accurately. The most intuitive way of obtaining a numerically exact solution of the time- dependent Schr¨odinger equation is to use standard wavepacket propagation meth- ods. These represent the evolving system wavefunction using basis set expansion techniques or grid representations [1–3]. Unfortunately, the standard methods are restricted by an exponential increase in the computational resources required with the number of degrees of freedom treated, usually no more than 4-6 nuclear modes can be included. Systems in which vibronic coupling plays a role are often much larger than this. To treat these systems using the standard methods it is then necessary to turn to reduced dimensionality models in which only a few degrees of freedom are explicitly included, and the remainder either ignored or included in a phenomenological manner. -
REACTIONS of HALOCYCLOPROPANES. The
This dissertation has been microfilmed exactly as received 69-11,652 HOUSER, Charles W., 1934- REACTIONS OF HALOCYCLOPROPANES. The Ohio State University, Ph.D., 1968 Chemistry, organic University Microfilms, Inc., Ann Arbor, Michigan REACTIONS OF HALOCYCLOPROPANES DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School o f The Ohio State U niversity By Charles W. Houser, B.A. ******** The Ohio State U niversity 1968 Approved hy /Adviser Department of Chemistry Dedicated to Jane and Brian i l ACKNOWLEDGMENTS The author wishes to express sincere appreciation to Professor Harold Shechter for the inception of this problem and for his helpful discussions throughout the course of this research. His editorial guidance during preparation of this manuscript is also gratefully acknowledged. National Science Foundation and Petroleum Research Fund are thanked for their financial assistance to this research. The author owes a special debt of gratitude to his wife, Jane, for her patience and encouragement during completion of this work. i i i VITA October 20, 1934 Born - Parkersburg, West Virginia 1954-1958 U. S. Marine Corps 1962 B.A., David Lipscomb College, Nashville, Tennessee 1962-1965 Teaching Assistant, The Ohio State University, Columbus, Ohio I965-I968 Research Associate, The Ohio State University, Columbus, Ohio iv CONTENTS Page ACKNOWLEDGMENTS.......................................................................................................... i i i VITA ......................................................................... -
Photo-Induced Cytotoxicity of Malonic Acid [C60]Fullerene Derivatives and Its Mechanism
http://www.paper.edu.cn Toxicology in Vitro 16 (2002) 41–46 www.elsevier.com/locate/toxinvit Photo-induced cytotoxicity of malonic acid [C60]fullerene derivatives and its mechanism X.L. Yang*,C.H. Fan,H.S. Zhu Research Center of Materials Science, Beijing Institute of Technology, PO Box 327, Beijing 100081, PR China Accepted 10 August 2001 Abstract The biological activities of fullerenes have attracted extensive attention in recent years. The aim of this paper is to study the relation of the photo-induced cytotoxicity of fullerene derivatives to their chemical structures as well as the possible cellular mechanism involved in the photocytotoxicity. Three C60 derivatives with two to four malonic acid groups (DMA C60,TMA C 60 and QMA C60) were prepared and the cytotoxicity of these compounds against HeLa cells was determined by MTT. Cell cycle was measured by flow cytometry. The results showed that the cytotoxicity of the malonic acid C60 derivatives was irradiation- and dose- dependent. The sequence of their photo-induced growth inhibition was DMA C60>TMA C60 >QMA C60. Hydroxyl radical quencher mannitol (10 mm) was not able to prevent cells from the damage induced by irradiated DMA C60. DMA C60,together with irradiation,was found to have an ability of inducing a decrease in the number of G 1 cells from 63 to 42% and a rise in that of G2+M cells from 6 to 26%. These data indicated that the number of malonic acid molecules added to C60 played an important role in the phototoxicity,and the blockage of cell cycle might be a mechanism of this activity. -
European Conference on the Dynamics of Molecular Systems Book of Abstracts
European conference on the dynamics of molecular systems Book of abstracts Department of Chemistry Jesus College University of Oxford 1 2 Plenary talks 3 PLENARY TALK P1 Imaging studies of inelastic collisions David H. Parker Dept of Molecular and Laser Physics, IMM, Radboud University, Nijmegen, the Netherlands. E‐mail address: [email protected] State-to-state imaging studies of the interaction of small molecules including O2,H2O, OH, CO and ammonia with H2 and with He will be described. These molecules are prominent components of molecular interstellar matter. In order to extract quantitative information on these molecules from telescope spectra, models are employed that depend critically on the rates of rotational energy exchange due to collisions with molecular hydrogen and helium. Collision rates are currently determined by theory from the multidimensional Potential Energy Surface (PES) describing the interaction of H2O and H2 [1] or He [2] and OH with H2 [3], or He. Our velocity map imaging [4] measurements of state-to-state differential and relative integral cross sections of rotational inelastic collisions, also as a function of collision energy, are used to test these PESs. For the H2O/H2, He system experiment is compared with state-of-the-art theoretical calculations by the group of L. Wiesenfeld (Grenoble) [5]. Our studies of astrochemistry relevant small molecules with the collision partners He and H2 at collision energy relevant to that of the interstellar media should place the theoretically determined PESs and the collision rates extracted from the PES on a firmer basis. References 1. P. Valiron M. Wernli, A. -
Activating Pyrimidines by Pre-Distortion for the General
Article Cite This: J. Am. Chem. Soc. 2019, 141, 15901−15909 pubs.acs.org/JACS Activating Pyrimidines by Pre-distortion for the General Synthesis of 7‑Aza-indazoles from 2‑Hydrazonylpyrimidines via Intramolecular Diels−Alder Reactions † ‡ § ⊥ † ∥ Vincent Le Fouler, Yu Chen, Vincent Gandon, , Vincent Bizet, Christophe Salome,́ ∥ # ∇ † Thomas Fessard, Fang Liu,*, K. N. Houk,*, and Nicolas Blanchard*, † Universitéde Haute-Alsace, Universitéde Strasbourg, CNRS, LIMA, UMR 7042, 68000 Mulhouse, France ‡ State Key Laboratory of Coordination Chemistry, Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China § Institut de Chimie Moleculairé et des Materiaux́ d’Orsay, CNRS UMR 8182, UniversitéParis-Sud, UniversitéParis-Saclay, Batiment̂ 420, 91405 Orsay cedex, France ⊥ Laboratoire de Chimie Moleculaire,́ CNRS UMR 9168, Ecole Polytechnique, IP Paris, route de Saclay, 91128 Palaiseau cedex, France ∥ SpiroChem AG Rosental Area, WRO-1047-3, Mattenstrasse 24, 4058 Basel, Switzerland # College of Sciences, Nanjing Agricultural University, Nanjing 210095, China ∇ Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States *S Supporting Information ABSTRACT: Pyrimidines are almost unreactive partners in Diels−Alder cycloadditions with alkenes and alkynes, and only reactions under drastic conditions have previously been reported. We describe how 2-hydrazonylpyrimidines, easily obtained in two steps from commercially available 2- halopyrimidines, can be exceptionally activated by trifluoro- acetylation. This allows a Diels−Alder cycloaddition under very mild reaction conditions, leading to a large diversity of aza-indazoles, a ubiquitous scaffold in medicinal chemistry. This reaction is general and scalable and has an excellent functional group tolerance. A straightforward synthesis of a key intermediate of Bayer’s Vericiguat illustrates the potential of this cycloaddition strategy. -
The Dissipative Photochemical Origin of Life: UVC Abiogenesis of Adenine
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 25 January 2021 doi:10.20944/preprints202101.0500.v1 Article The Dissipative Photochemical Origin of Life: UVC Abiogenesis of Adenine Karo Michaelian Department of Nuclear Physics and Application of Radiation, Instituto de Física, Universidad Nacional Autónoma de México, Circuito Interior de la Investigación Científica, Cuidad Universitaria, Cuidad de México, C.P. 04510.; karo@fisica.unam.mx Academic Editor: Karo Michaelian Version January 21, 2021 submitted to Entropy 1 Abstract: I describe the non-equilibrium thermodynamics and the photochemical mechanisms which 2 may have been involved in the dissipative structuring, proliferation and evolution of the fundamental 3 molecules at the origin of life from simpler and more common precursor molecules under the 4 impressed UVC photon flux of the Archean. Dissipative structuring of the fundamental molecules is 5 evidenced by their strong and broad wavelength absorption bands and rapid radiationless dexcitation 6 in this wavelength region. Molecular configurations with large photon dissipative efficacy become 7 dominant through dissipative selection. Proliferation arises from the auto- and cross-catalytic nature 8 of the intermediate products. This inherent non-linearity gives rise to numerous stationary states. 9 Amplification of a molecular concentration fluctuation near a bifurcation allows evolution of the 10 concentration profile towards states of generally greater photon disspative efficacy. An example is 11 given of photochemical dissipative abiogenesis of adenine from the precursors HCN and H2O within 12 a fatty acid vesicle on a hot ocean surface, driven far from equilibrium by the impressed UVC light. 13 The kinetic equations for the photochemical reactions with diffusion are resolved under different 14 environmental conditions and the results analyzed within the framework of Classical Irreversible 15 Thermodynamic theory. -
The Dissipative Photochemical Origin of Life: UVC Abiogenesis of Adenine
entropy Article The Dissipative Photochemical Origin of Life: UVC Abiogenesis of Adenine Karo Michaelian Department of Nuclear Physics and Applications of Radiation, Instituto de Física, Universidad Nacional Autónoma de México, Circuito Interior de la Investigación Científica, Cuidad Universitaria, Mexico City, C.P. 04510, Mexico; karo@fisica.unam.mx Abstract: The non-equilibrium thermodynamics and the photochemical reaction mechanisms are described which may have been involved in the dissipative structuring, proliferation and complex- ation of the fundamental molecules of life from simpler and more common precursors under the UVC photon flux prevalent at the Earth’s surface at the origin of life. Dissipative structuring of the fundamental molecules is evidenced by their strong and broad wavelength absorption bands in the UVC and rapid radiationless deexcitation. Proliferation arises from the auto- and cross-catalytic nature of the intermediate products. Inherent non-linearity gives rise to numerous stationary states permitting the system to evolve, on amplification of a fluctuation, towards concentration profiles providing generally greater photon dissipation through a thermodynamic selection of dissipative efficacy. An example is given of photochemical dissipative abiogenesis of adenine from the precursor HCN in water solvent within a fatty acid vesicle floating on a hot ocean surface and driven far from equilibrium by the incident UVC light. The kinetic equations for the photochemical reactions with diffusion are resolved under different environmental conditions and the results analyzed within the framework of non-linear Classical Irreversible Thermodynamic theory. Keywords: origin of life; dissipative structuring; prebiotic chemistry; abiogenesis; adenine; organic molecules; non-equilibrium thermodynamics; photochemical reactions Citation: Michaelian, K. The Dissipative Photochemical Origin of MSC: 92-10; 92C05; 92C15; 92C40; 92C45; 80Axx; 82Cxx Life: UVC Abiogenesis of Adenine.