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Fruiting Body Form, Not Nutritional Mode, Is the Major Driver of Diversification in Mushroom-Forming Fungi
Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi Marisol Sánchez-Garcíaa,b, Martin Rybergc, Faheema Kalsoom Khanc, Torda Vargad, László G. Nagyd, and David S. Hibbetta,1 aBiology Department, Clark University, Worcester, MA 01610; bUppsala Biocentre, Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, SE-75005 Uppsala, Sweden; cDepartment of Organismal Biology, Evolutionary Biology Centre, Uppsala University, 752 36 Uppsala, Sweden; and dSynthetic and Systems Biology Unit, Institute of Biochemistry, Biological Research Center, 6726 Szeged, Hungary Edited by David M. Hillis, The University of Texas at Austin, Austin, TX, and approved October 16, 2020 (received for review December 22, 2019) With ∼36,000 described species, Agaricomycetes are among the and the evolution of enclosed spore-bearing structures. It has most successful groups of Fungi. Agaricomycetes display great di- been hypothesized that the loss of ballistospory is irreversible versity in fruiting body forms and nutritional modes. Most have because it involves a complex suite of anatomical features gen- pileate-stipitate fruiting bodies (with a cap and stalk), but the erating a “surface tension catapult” (8, 11). The effect of gas- group also contains crust-like resupinate fungi, polypores, coral teroid fruiting body forms on diversification rates has been fungi, and gasteroid forms (e.g., puffballs and stinkhorns). Some assessed in Sclerodermatineae, Boletales, Phallomycetidae, and Agaricomycetes enter into ectomycorrhizal symbioses with plants, Lycoperdaceae, where it was found that lineages with this type of while others are decayers (saprotrophs) or pathogens. We constructed morphology have diversified at higher rates than nongasteroid a megaphylogeny of 8,400 species and used it to test the following lineages (12). -
Hysterangium (Hysterangiales, Hysterangiaceae) from Northern Mexico
Hysterangium (Hysterangiales, Hysterangiaceae) from northern Mexico Gonzalo Guevara Guerrero 1, Michael A. Castellano 2, Jesús García Jiménez 1, Efrén Cázares González 3, James M. Trappe 3 1 Instituto Tecnológico de Cd. Victoria, Av. Portes Gil 1301 Pte. C.P. 87010, A.P. 175 Cd. Victoria, Tamps. México. 2 U.S. Department of Agriculture, Forest Service, Pacific Northwest Research Station, Forestry Sciences Laboratory, 3200 Jefferson Way, Corvallis, 3 Oregon 97331 USA. Dept. Forest Science, Richardson Hall, Oregon State University, Corvallis, Oregon, 97331 USA 8 0 0 2 Hysterangium (Hysterangiales, Hysterangiaceae) del norte de México , 0 0 1 - Resumen. Tres nuevas especies de Hysterangium (H. quercicola, H. latisporum, and H. 5 9 velatisporum) son descritas para el norte de México. Además, una especie previamente : 8 2 descrita de Hysterangium (H. aureum) es registrada por primera vez para México. A Í Palabras clave: Quercus, hipogeos, pseudotrufas, falsas trufas, ectomicorriza. G O L O C Abstract. Three new species of Hysterangium (H. quercicola, H. latisporum, and H. I M velatisporum) are described from northern Mexico. In addition, one previously described E D Hysterangium species (H. aureum) is recorded for the first time from Mexico. A Key words: Quercus, hypogeous, pseudotruffle, sequestrate, ectomycorrhiza. N A C I X Recibido 20 de agosto 2008; aceptado 14 de diciembre 2008. E M Received 20 August 2008; accepted 14 December 2008. A T S I V E R Introduction In Mexico, only one Hysterangium species has been / reported H. separabile Zeller from the states of Mexico and o c i The genus Hysterangium Vittadini can be recognized by its Tamaulipas (Trappe and Guzmán, 1971; García et al., 2005). -
Ectomycorrhizal Fungal Communities Are Dominated by Mammalian Dispersed Truffle-Like Taxa in North-East Australian Woodlands
Mycorrhiza https://doi.org/10.1007/s00572-019-00886-2 ORIGINAL ARTICLE Ectomycorrhizal fungal communities are dominated by mammalian dispersed truffle-like taxa in north-east Australian woodlands S. J. Nuske1,2 & S. Anslan3 & L. Tedersoo4 & B. C. Congdon5 & S. E. Abell1 Received: 7 November 2018 /Accepted: 5 March 2019 # The Author(s) 2019 Abstract Mycorrhizal fungi are very diverse, including those that produce truffle-like fruiting bodies. Truffle-like fungi are hypogeous and sequestrate (produced below-ground, with an enclosed hymenophore) and rely on animal consumption, mainly by mammals, for spore dispersal. This dependence links mycophagous mammals to mycorrhizal diversity and, assuming truffle-like fungi are important components of mycorrhizal communities, to plant nutrient cycling and ecosystem health. These links are largely untested as currently little is known about mycorrhizal fungal community structure and its dependence on mycophagous mammals. We quantified the mycorrhizal fungal community in the north-east Australian woodland, including the portion interacting with ten species of mycophagous mammals. The study area is core habitat of an endangered fungal specialist marsupial, Bettongia tropica, and as such provides baseline data on mycorrhizal fungi-mammal interactions in an area with no known mammal declines. We examined the mycorrhizal fungi in root and soil samples via high-throughput sequencing and compared the observed taxa to those dispersed by mycophagous mammals at the same locations. We found that the dominant root-associating ectomycorrhizal fungal taxa (> 90% sequence abundance) included the truffle-like taxa Mesophellia, Hysterangium and Chondrogaster. These same taxa were also present in mycophagous mammalian diets, with Mesophellia often dominating. -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
Phylogenetic Relationships of the Gomphales Based on Nuc-25S-Rdna, Mit-12S-Rdna, and Mit-Atp6-DNA Combined Sequences
fungal biology 114 (2010) 224–234 journal homepage: www.elsevier.com/locate/funbio Phylogenetic relationships of the Gomphales based on nuc-25S-rDNA, mit-12S-rDNA, and mit-atp6-DNA combined sequences Admir J. GIACHINIa,*, Kentaro HOSAKAb, Eduardo NOUHRAc, Joseph SPATAFORAd, James M. TRAPPEa aDepartment of Forest Ecosystems and Society, Oregon State University, Corvallis, OR 97331-5752, USA bDepartment of Botany, National Museum of Nature and Science (TNS), Tsukuba-shi, Ibaraki 305-0005, Japan cIMBIV/Universidad Nacional de Cordoba, Av. Velez Sarfield 299, cc 495, 5000 Co´rdoba, Argentina dDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA article info abstract Article history: Phylogenetic relationships among Geastrales, Gomphales, Hysterangiales, and Phallales Received 16 September 2009 were estimated via combined sequences: nuclear large subunit ribosomal DNA (nuc-25S- Accepted 11 January 2010 rDNA), mitochondrial small subunit ribosomal DNA (mit-12S-rDNA), and mitochondrial Available online 28 January 2010 atp6 DNA (mit-atp6-DNA). Eighty-one taxa comprising 19 genera and 58 species were inves- Corresponding Editor: G.M. Gadd tigated, including members of the Clathraceae, Gautieriaceae, Geastraceae, Gomphaceae, Hysterangiaceae, Phallaceae, Protophallaceae, and Sphaerobolaceae. Although some nodes Keywords: deep in the tree could not be fully resolved, some well-supported lineages were recovered, atp6 and the interrelationships among Gloeocantharellus, Gomphus, Phaeoclavulina, and Turbinel- Gomphales lus, and the placement of Ramaria are better understood. Both Gomphus sensu lato and Rama- Homobasidiomycetes ria sensu lato comprise paraphyletic lineages within the Gomphaceae. Relationships of the rDNA subgenera of Ramaria sensu lato to each other and to other members of the Gomphales were Systematics clarified. -
AR TICLE Phylogenetic Placement of Itajahya
IMA FUNGUS · 6(2): 257–262 (2015) doi:10.5598/imafungus.2015.06.02.01 Phylogenetic placement of Itajahya: An unusual Jacaranda fungal associate ARTICLE Seonju Marincowitz2, Martin P.A. Coetzee1,2, P. Markus Wilken1,2, Brenda D. Wingeld1,2, and Michael J. Wingeld2 1Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, P.O. Box X20, Pretoria, 0028, South Africa 2Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, P.O. Box X20, Pretoria, 0028, South Africa; corresponding author e-mail: [email protected] Abstract: Itajahya is a member of Phallales (Agaricomycetes), which, based on the presence of a calyptra Key words: and DNA sequence data for I. rosea, has recently been raised to generic status from a subgenus of Homobasidiomycetes Phallus. The type species of the genus, I. galericulata, is commonly known as the Jacaranda stinkhorn molecular phylogeny in Pretoria, South Africa, which is the only area where the fungus is known outside the Americas. The Phallomycetidae common name is derived from its association with the South American originating Jacaranda mimosifolia phalloid fungi trees in the city. The aim of this study was to consider the unusual occurrence of the fungus in South South Africa Africa, to place it on the available Phallales phylogeny and to test whether it merits generic status. Fresh stinkhorns basidiomes were collected during the summer of 2015 and sequenced. Phylogenetic analyses were based on sequence data for the nuc-LSU-rDNA (LSU) and ATPase subunit 6 (ATP6) regions. The results showed that I. rosea and I. galericulata are phylogenetically related. -
(Basidiomycota, Phallales) in India
© 2018 W. Szafer Institute of Botany Polish Academy of Sciences Plant and Fungal Systematics 63(2): 39–44, 2018 ISSN 2544-7459 (print) DOI: 10.2478/pfs-2018-0006 Morphological and molecular evidence for the occurrence of Itajahya galericulata (Basidiomycota, Phallales) in India Ravi S. Patel, Ajit M. Vasava & Kishore S. Rajput* Abstract. Itajahya galericulata (Phallales, Phallaceae) was previously reported from Article info several countries in South America and Africa. Recently we found I. galericulata in the Received: 2 May 2018 city of Vadodara, Gujarat State, India. To verify its identity we studied its morphology and Revision received: 21 Nov. 2018 performed molecular phylogenetic analyses using nuclear rDNA LSU and mitochondrial Accepted: 22 Nov. 2018 ATP6 loci. Here we also provide nuclear rDNA ITS sequences for the Indian collection, Published: 14 Dec. 2018 since up to now no sequences of this region have been available for I. galericulata in Corresponding Editor GenBank. This study furnishes the first evidence for the occurrence of I. galericulata in Marcin Piątek India and in Asia as a whole. Key words: Itajahya, Phallaceae, ITS, molecular phylogeny, DNA barcoding, India, Asia Introduction Members of the fungal family Phallaceae, classified a poorly known yet taxonomically important member of within the order Phallales and subphylum Basidiomycota, the genus – Itajahya galericulata – and concluded that are commonly known as stinkhorn mushrooms. The fam- it is phylogenetically separated from species of Phallus ily contains 21 genera and 77 species (Kirk et al. 2008), and Dictyophora. Their study also confirmed that Ita- including the genus Itajahya, which was first described jahya rosea and I. -
Sequencing Abstracts Msa Annual Meeting Berkeley, California 7-11 August 2016
M S A 2 0 1 6 SEQUENCING ABSTRACTS MSA ANNUAL MEETING BERKELEY, CALIFORNIA 7-11 AUGUST 2016 MSA Special Addresses Presidential Address Kerry O’Donnell MSA President 2015–2016 Who do you love? Karling Lecture Arturo Casadevall Johns Hopkins Bloomberg School of Public Health Thoughts on virulence, melanin and the rise of mammals Workshops Nomenclature UNITE Student Workshop on Professional Development Abstracts for Symposia, Contributed formats for downloading and using locally or in a Talks, and Poster Sessions arranged by range of applications (e.g. QIIME, Mothur, SCATA). 4. Analysis tools - UNITE provides variety of analysis last name of primary author. Presenting tools including, for example, massBLASTer for author in *bold. blasting hundreds of sequences in one batch, ITSx for detecting and extracting ITS1 and ITS2 regions of ITS 1. UNITE - Unified system for the DNA based sequences from environmental communities, or fungal species linked to the classification ATOSH for assigning your unknown sequences to *Abarenkov, Kessy (1), Kõljalg, Urmas (1,2), SHs. 5. Custom search functions and unique views to Nilsson, R. Henrik (3), Taylor, Andy F. S. (4), fungal barcode sequences - these include extended Larsson, Karl-Hnerik (5), UNITE Community (6) search filters (e.g. source, locality, habitat, traits) for 1.Natural History Museum, University of Tartu, sequences and SHs, interactive maps and graphs, and Vanemuise 46, Tartu 51014; 2.Institute of Ecology views to the largest unidentified sequence clusters and Earth Sciences, University of Tartu, Lai 40, Tartu formed by sequences from multiple independent 51005, Estonia; 3.Department of Biological and ecological studies, and for which no metadata Environmental Sciences, University of Gothenburg, currently exists. -
Sequestrate Fungi from Patagonian Nothofagus Forests: Cystangium (Russulaceae, Basidiomycota)
Sequestrate fungi from Patagonian Nothofagus forests: Cystangium (Russulaceae, Basidiomycota) Trierveiler-Pereira, L., Smith, M. E., Trappe, J. M., & Nouhra, E. R. (2015). Sequestrate fungi from Patagonian Nothofagus forests: Cystangium (Russulaceae, Basidiomycota). Mycologia, 107(1), 90-103. doi:10.3852/13-302 10.3852/13-302 Allen Press Inc. Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Mycologia, 107(1), 2015, pp. 90–103. DOI: 10.3852/13-302 # 2015 by The Mycological Society of America, Lawrence, KS 66044-8897 Sequestrate fungi from Patagonian Nothofagus forests: Cystangium (Russulaceae, Basidiomycota) Larissa Trierveiler-Pereira1 Ectomycorrhizal, hypogeous fungi in the Basidio- PPGBOT, Department of Botany, Universidade Federal mycota and Ascomycota are important components of do Rio Grande do Sul, Porto Alegre, Brazil 91501-970 the forest soil environment. Not only do they function Matthew E. Smith as nutrient absorbing organisms for their tree hosts, Department of Plant Pathology, University of Florida, these fungi also improve soil conditions (Perry et al. Gainesville, Florida 32611 1989) and interact with a variety of forest organisms (Trappe and Luoma 1992). In particular, they are an James M. Trappe important food source for animals in ectomycorrhizal Department of Forest Ecosystems and Society, Oregon forests (Maser et al. 1978, Claridge et al. 2002, Vernes State University, Corvallis, Oregon 97331 et al. 2004, Claridge and Trappe 2005, Trappe et al. Eduardo R. Nouhra 2006, Vernes 2010, Katarzˇyte˙ and Kutorga 2011, Instituto Multidisciplinario de Biologı´a Vegetal Schickmann et al. 2012), including those of Argentina (CONICET), Universidad Nacional de Co´rdoba, (Perez Calvo et al. 1989, Nouhra et al. 2005). -
Notes, Outline and Divergence Times of Basidiomycota
Fungal Diversity (2019) 99:105–367 https://doi.org/10.1007/s13225-019-00435-4 (0123456789().,-volV)(0123456789().,- volV) Notes, outline and divergence times of Basidiomycota 1,2,3 1,4 3 5 5 Mao-Qiang He • Rui-Lin Zhao • Kevin D. Hyde • Dominik Begerow • Martin Kemler • 6 7 8,9 10 11 Andrey Yurkov • Eric H. C. McKenzie • Olivier Raspe´ • Makoto Kakishima • Santiago Sa´nchez-Ramı´rez • 12 13 14 15 16 Else C. Vellinga • Roy Halling • Viktor Papp • Ivan V. Zmitrovich • Bart Buyck • 8,9 3 17 18 1 Damien Ertz • Nalin N. Wijayawardene • Bao-Kai Cui • Nathan Schoutteten • Xin-Zhan Liu • 19 1 1,3 1 1 1 Tai-Hui Li • Yi-Jian Yao • Xin-Yu Zhu • An-Qi Liu • Guo-Jie Li • Ming-Zhe Zhang • 1 1 20 21,22 23 Zhi-Lin Ling • Bin Cao • Vladimı´r Antonı´n • Teun Boekhout • Bianca Denise Barbosa da Silva • 18 24 25 26 27 Eske De Crop • Cony Decock • Ba´lint Dima • Arun Kumar Dutta • Jack W. Fell • 28 29 30 31 Jo´ zsef Geml • Masoomeh Ghobad-Nejhad • Admir J. Giachini • Tatiana B. Gibertoni • 32 33,34 17 35 Sergio P. Gorjo´ n • Danny Haelewaters • Shuang-Hui He • Brendan P. Hodkinson • 36 37 38 39 40,41 Egon Horak • Tamotsu Hoshino • Alfredo Justo • Young Woon Lim • Nelson Menolli Jr. • 42 43,44 45 46 47 Armin Mesˇic´ • Jean-Marc Moncalvo • Gregory M. Mueller • La´szlo´ G. Nagy • R. Henrik Nilsson • 48 48 49 2 Machiel Noordeloos • Jorinde Nuytinck • Takamichi Orihara • Cheewangkoon Ratchadawan • 50,51 52 53 Mario Rajchenberg • Alexandre G. -
Duke University Dissertation Template
Systematics, Phylogeography and Ecology of Elaphomycetaceae by Hannah Theresa Reynolds Department of Biology Duke University Date:_______________________ Approved: ___________________________ Rytas Vilgalys, Supervisor ___________________________ Marc Cubeta ___________________________ Katia Koelle ___________________________ François Lutzoni ___________________________ Paul Manos Dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Biology in the Graduate School of Duke University 2011 iv ABSTRACTU Systematics, Phylogeography and Ecology of Elaphomycetaceae by Hannah Theresa Reynolds Department of Biology Duke University Date:_______________________ Approved: ___________________________ Rytas Vilgalys, Supervisor ___________________________ Marc Cubeta ___________________________ Katia Koelle ___________________________ François Lutzoni ___________________________ Paul Manos An abstract of a dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Biology in the Graduate School of Duke University 2011 Copyright by Hannah Theresa Reynolds 2011 Abstract This dissertation is an investigation of the systematics, phylogeography, and ecology of a globally distributed fungal family, the Elaphomycetaceae. In Chapter 1, we assess the literature on fungal phylogeography, reviewing large-scale phylogenetics studies and performing a meta-data analysis of fungal population genetics. In particular, we examined -
An All-Taxa Biodiversity Inventory of the Huron Mountain Club
AN ALL-TAXA BIODIVERSITY INVENTORY OF THE HURON MOUNTAIN CLUB Version: August 2016 Cite as: Woods, K.D. (Compiler). 2016. An all-taxa biodiversity inventory of the Huron Mountain Club. Version August 2016. Occasional papers of the Huron Mountain Wildlife Foundation, No. 5. [http://www.hmwf.org/species_list.php] Introduction and general compilation by: Kerry D. Woods Natural Sciences Bennington College Bennington VT 05201 Kingdom Fungi compiled by: Dana L. Richter School of Forest Resources and Environmental Science Michigan Technological University Houghton, MI 49931 DEDICATION This project is dedicated to Dr. William R. Manierre, who is responsible, directly and indirectly, for documenting a large proportion of the taxa listed here. Table of Contents INTRODUCTION 5 SOURCES 7 DOMAIN BACTERIA 11 KINGDOM MONERA 11 DOMAIN EUCARYA 13 KINGDOM EUGLENOZOA 13 KINGDOM RHODOPHYTA 13 KINGDOM DINOFLAGELLATA 14 KINGDOM XANTHOPHYTA 15 KINGDOM CHRYSOPHYTA 15 KINGDOM CHROMISTA 16 KINGDOM VIRIDAEPLANTAE 17 Phylum CHLOROPHYTA 18 Phylum BRYOPHYTA 20 Phylum MARCHANTIOPHYTA 27 Phylum ANTHOCEROTOPHYTA 29 Phylum LYCOPODIOPHYTA 30 Phylum EQUISETOPHYTA 31 Phylum POLYPODIOPHYTA 31 Phylum PINOPHYTA 32 Phylum MAGNOLIOPHYTA 32 Class Magnoliopsida 32 Class Liliopsida 44 KINGDOM FUNGI 50 Phylum DEUTEROMYCOTA 50 Phylum CHYTRIDIOMYCOTA 51 Phylum ZYGOMYCOTA 52 Phylum ASCOMYCOTA 52 Phylum BASIDIOMYCOTA 53 LICHENS 68 KINGDOM ANIMALIA 75 Phylum ANNELIDA 76 Phylum MOLLUSCA 77 Phylum ARTHROPODA 79 Class Insecta 80 Order Ephemeroptera 81 Order Odonata 83 Order Orthoptera 85 Order Coleoptera 88 Order Hymenoptera 96 Class Arachnida 110 Phylum CHORDATA 111 Class Actinopterygii 112 Class Amphibia 114 Class Reptilia 115 Class Aves 115 Class Mammalia 121 INTRODUCTION No complete species inventory exists for any area.