Iron and Manganese

Total Page:16

File Type:pdf, Size:1020Kb

Iron and Manganese 6/22/2008 Institute of Food and Agricultural Sciences (IFAS) Biogeochemistry of Wetlands SiScience an dAd App litilications Cycling of Iron and Manganese Wetland Biogeochemistry Laboratory Soil and Water Science Department University of Florida Instructor K. Ramesh Reddy [email protected] 6/22/2008 WBL 1 Cycling of Iron and Manganese Lecture Outline Introduction Major components of metal cycle Reduction of Iron and Manganese Oxidation of Iron and Manganese Mobility of Iron and Manganese Ecological significance Nutrient regeneration/immobilization Mn (IV) Ferromanganese modules Root plaque formation Fe (III) Ferrolysis Methane emissions Mn (II) Summary Fe (II) 6/22/2008 WBL 2 1 6/22/2008 Cycling of Iron and Manganese Learning Objectives Understand the stability of iron and manganese solid phases as function of Eh and pH Role of Fe (III) and Mn(IV) reduction in organic matter decomposition and nutrient regeneration Adverse effects of reduced Fe (II) and Mn (II) Alteration soil pH and alkalinity Suppresion of sulfate reduction and methanog enesis Formation of minerals (e.g., siderite, vivianite, pyrite, and others) Mottling and gleying serve as indicators of hydric soils Oxidation of toxic organic contaminants 6/22/2008 WBL 3 Iron (Fe) and Manganese (Mn) Iron 4th most abundant element in the Earth’s crust, (average concentration of 4. 3 %, in soils and sediments 0.1-10%) Manganese On average 60 time less abundant than Fe (In soils and sediments 0.002-0.6%) Fe & Mn are generally considered to be trace elements in open-water aquatic systems, but major elements in soils and sedimentary environments 6/22/2008 WBL 4 2 6/22/2008 Iron (Fe) and Manganese (Mn) • Required by organisms as nutrients – Fe is a major component of cytochromes and other oxidation-reduction proteins – Mn is a cofactor for various enzyme systems. Plants assimilate 20-500 mg/kg in dry matter • Although abundant in the Earth’s crust, unlike other elements (e.g. C, N, S), they are often not readily available for organisms (idh(oxides have l ow solubility) – Plants and microorganisms produce chelating agents (siderophores) which facilitate solubilization and uptake of Fe/Mn from insoluble minerals 6/22/2008 WBL 5 Fe-Containing Minerals Siderite FeCO 3 Goethite FeOOH Siderite FeCO3 Vivianite6/22/2008 Fe3(PO4)2 WBLHematite Fe2O3 6 3 6/22/2008 Mn-Containing Minerals Rhodocrosite MnCO3 Rhodonite (Mn,Fe,Mg,Ca)SiO3 6/22/2008 WBL 7 Importance of Fe and Mn in wetlands • Role in decomposition of organic matter • Precipitation of sulfides – Adverse effects of sulfide on plant growth – Reduces available phosphorus – Toxic to plants at high levels • Suppression of sulfate reduction and, methanogenesis • Alteration of pH/alkalinity conditions • Mobilization/immobilization of trace metals • Formation minerals (siderite, vivianite, magnetite) 6/22/2008 WBL 8 4 6/22/2008 Oxidation States of Iron and Manganese MnO2 +4 Mn2+ +2 FeOOH +3 Fe(OH)3 +3 FePO4 +3 FeS2 +2 FeCO3 +2 Fe2+ +2 6/22/2008 WBL 9 Forms of Iron and Manganese Water soluble (dissolved, pore water) Exchangeable (sorbed on cation exchange complex) Reducible (insoluble ferric compounds) Residual (crystalline stable pool) Forms of Fe and Mn compounds Amorphous Crystalline 6/22/2008 WBL 10 5 6/22/2008 Soil pH effects on Metals (Me) Near neutral to alkaline Low (acid) pH pHdiiH conditions conditions Me2+ Me2+ - 2+ - Me MeCO3 Clay Me2+ - Me2+ Me2+ MeOH2 - - MeO Metals in solution Precipitation Adsorption Increased solubility leads Decreased solubility leads to more bioavailability to less bioavailability 6/22/2008 WBL 11 Oxidation-Reduction Fe2+ 2+ Me2+ Fe 2+ Me2+ Me 2+ Fe Fe2+ 2+ Fe3+ Me2+ Fe3+ Me Fe3+ Particle Particle Me2+ Fe3+ Me2+ Fe3+ Me2+ Reducing or Acid Conditions Oxidized Conditions 2+ + - 2Fe + 3H2O Fe2O3 + 6H + 2e 6/22/2008 WBL 12 6 6/22/2008 Iron cycle Water 2+ FeOOH OM-Fe2+ O2 + Fe Aerobic O 2+ 2 Fe2+ FeOOH OM-Fe Soil FeOOH 2+ Fe2+ FeOOH OM-Fe Anaerobic 2- +S2- +S FeS FeS2 6/22/2008 WBL 13 Manganese cycle Water 2+ MnOOH OM-Mn2+ O2 + Mn Aerobic O 2+ 2 Mn2+ MnOOH OM-Mn Soil MnOOH 2+ Mn2+ MnOOH OM-Mn Anaerobic 6/22/2008 WBL 14 7 6/22/2008 Sequential Reduction of Electron Acceptors Organic Substrate - tion [e donor] a 2+ S2- 2- Fe SO4 NO - CH4 3 Mn2+ ive Concentr t O2 Rela Oxygen Nitrate Iron Methanogenesis Manganese Time Sulfate 6/22/2008 WBL 15 Oxidation-Reduction Mn4+ Mn2+ CO2 CH4 2- 2- 3+ 2+ - SO4 S Fe Fe NO3 N2 O2 H2O -200 -100 0 +100 +200 +300 +400 Redox Potential, mV (at pH 7) 6/22/2008 WBL 16 8 6/22/2008 Redox Zones with Depth WATER Oxygen Reduction Zone SOIL Oxygen Reduction Zone Aerobic I Eh = > 300 mV Nitrate Reduction Zone Facultative II Mn4+ Reduction Zone Eh = 100 to 300 mV Fe3+ Reduction Zone III Eh = --100100 to 100 mV epth D Sulfate Reduction Zone Anaerobic IV Eh = -200 to -100 mV V Methanogenesis Eh = < -200 mV 6/22/2008 WBL 17 Redox Potential and pH 1000 800 600 400 Mn 200 Fe 0 Eh,[mv] -200 -400 -600 0 2 4 6 8 10 12 pH 6/22/2008 WBLBaas Becking et al. 18 9 6/22/2008 Stability of Fe - Eh and pH 1200 Fe3+ (mV) 800 O2 Fe2O3 400 H O Fe2+ 2 FeCO 0 H2O 3 dox Potential H2 FeS2 Re -400 Fe2+ FeCO3 Fe3O4 0 2 4 6 8 10 12 14 pH 6/22/2008 WBL 19 Stability of Mn - Eh and pH 1200 (mV) 800 MnO2 400 Mn2+ Mn2O3 0 Mn O dox Potential 3 4 MnCO3 Re -400 0 2 4 6 8 10 12 pH 6/22/2008 WBL 20 10 6/22/2008 Reduction of Iron (III) and Manganese (IV) Microbial communities Biotic and abiotic reduction Forms of iron and manganese Shewanella oneidensis Growing on the surface of hematite Courtesy Pacific Northwest National Laboratory Geobacter metallireducens 6/22/2008 WBL 21 Iron (III) and Manganese (IV) Reducers Fermentative Fe(III) and Mn(IV) reducers Bacillus;; Ferribacterium; CloClostridium;stridium; Desulfovibrio; Escherichia Geobacter; . Sulfur-oxidizing Fe(III) and Mn(IV) reducers Thiobacillus spp., Sulfolobus spp Hydrogen-oxidizing Fe(III) and Mn(IV) reducers - Pseudomonas spp., Shewanella spp Organic acid-oxidizing Fe(III) and Mn(IV) reducers Aromatic compound-oxidizing Fe(III) reducers - Geobacter spp 6/22/2008 WBL 22 11 6/22/2008 Reduction of Iron (III) and Manganese (IV) Oxidized forms are solid phases under most conditions Bacterial reduction depends on the ability of bacteria to: Solubilize solid phases Attach directly to substrate and directly transfer electrons CO Transport the substrates directly 2 into cells as solid Fe/Mn oxide CH2O Fe2+/Mn2+ 6/22/2008 WBL 23 Reduction of Iron (III) and Manganese (IV) Bacterial reduction of Fe(III) and Mn(IV) depends on: The amount of bioavailable reductant (organic and inorganic substances) for microbial utilization The amount of bioavailable oxidant (manganese or iron) for microbial utilization. 6/22/2008 WBL 24 12 6/22/2008 Iron Respiration Detrital Matter Enzyme Complex Polymers Hydrolysis Monomers Cellulose, Hemicellulose, Sugars, Amino Acids Proteins, Lipids, Waxes, Lignin Fatty Acids Uptake Glucose Glycolysis Oxidative phosphorylation TCA Cycle Pyruvate CO Substrate level 2 CO 2 Acetate phosphorylation Mn4+, Fe3+ e- Uptake Organic Acids Lactate [acetate, propionate, butyrate, ATP, Substrate level lactate, alcohols, H2, and CO2] phosphorylation Iron Reducing Bacterial Cell Fermenting Bacterial Cell Mn2+, Fe2+ 6/22/2008 WBL 25 120 100 y Yield g 80 60 40 of Aerobic Ener 20 % 0 - 2- O2 NO3 MnO2 Fe(OH)3 SO4 Electron Acceptors 6/22/2008 WBL 26 13 6/22/2008 Abiotic reduction of Fe (III) and Mn (IV) Microbial end products Citrate Malate Oxalate Pyruvate (oxidized to acetate with non enzymatic Mn(IV) reduction) Sulfides Nitrite - NH4 (oxidized to N2 or NO2 with Mn (IV)) Humic acids (electron shuttles) 6/22/2008 WBL 27 Humic Electron Shuttling Fe(II) Fe(OH)3(s) • Process may have important Abiotic implications for controls on rate and extent of Fe(III) oxide reduction - depending on concentration and reactivity of humic Humicoxid(aq) Humicred(aq) subtbstances in so ils an d sediments Lovley et al. (1996) Fe(III)-Reducing Bacteria (enzymatic activity) 6/22/2008 WBL 28 14 Patrick and Henderson, 1981 SSSAJ 45:35-38 Patrick and Henderson, 1981 SSSAJ 45:35-38 6/22/2008 WBL 29 6/22/2008 WBL 30 2+ -1 Mn2+ (mg kg-1) Fe (mg kg ) 100 200 300 400 500 120 160 200 40 80 0 0 Mn (IV)Reduction Fe (III)Reduction -200 -100 100 -200 -100 100 Redox Potential(mv) Redox Potential(mV) 0 200 300 400 500 0 200 300 400 500 6/22/2008 15 6/22/2008 Oxidation of Iron (II) and Manganese (II) Microbial communities Biotic and abiotic reduction 6/22/2008 WBL 31 Oxidation of Iron (II) and Manganese (II) Iron hydroxide precipitate in a Missouri stream receiving acid drainage from surface coal mining. Fe(II) oxidizing bacteria) • Mesophiles (< 40 ºC): – Thiobacillus, – Leptospirillum, • Moderate thermophiles (40-60 ºC): – Sulfobacillus, – Acidimicrobium, – Ferroplasma (an extreme acidophile which grows at pH 0!) • Extreme thermophiles (> 60 ºC) – Acidianus, Source: Environmental Contaminants; Status and Trends of the Nations Biological Resources Credit: D. Hardesty, USGS Columbia Environmental Research Center – Sulfurococcus 6/22/2008 WBL 32 16 6/22/2008 Iron Electron donor Bacteria Obligate Lithotrophs Fe (II) Thio bac illus ferrox idans FeSO4 Ferrobacillus ferroxidans FeS 2 [pH = 2 to 3.5] Fe3(PO)4 Carbon source = CO2 Facultative Lithotrophs FeCO 3 Leptothrix FeS 2 Gallionella Organic complexes of Fe Heterotrophs Organic matter 6/22/2008 WBL 33 Eh-pH Iron Stability – Iron Bacteria Fe3+ 800 Thiobacillus O ferrooxidans 2 Sulfolobus ) Metallogenium V 400 Fe2O3 Siderocapsa Leptothrix Fe2+ gallionella 0 H2O FeCO3 FeS2 Potential (m FeCO x -400 3 Fe3O4 H2 Redo -800 0 2 4 6 8 10 12 14 6/22/2008 WBLpH 34 17 6/22/2008 Manganese Electron donor Bacteria Mn(II) Obligate Lithotrophs MnCO3 Arthrobacter; Bacillus; Leptothrix; Metallogenium; Flavobacterium; Pseudomonas Organic complexes of Mn Heterotrophs 6/22/2008 WBL 35 Oxidation of Fe and Manganese • Can occur under aerobic and anaerobic conditions – Fe(II) oxidized where sulfate reduction and methanogenesis occur.
Recommended publications
  • Limits of Iron Fertilization
    LIMITS OF IRON FERTILIZATION Anand Gnanadesikan1, John P. Dunne1 and Irina Marinov2 1: NOAA Geophysical Fluid Dynamics Laboratory, PO Box 308, Princeton, NJ 08542 [email protected], [email protected] 2: Department of Earth, Atmosphere and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA, [email protected] ABSTRACT Iron fertilization has been proposed as a cheap, controllable, and environmentally benign method for removing carbon dioxide from the atmosphere. While this is in fact the case in simple, 3-box models of the carbon cycle, more realistic models show that these claims fall short of reality. The fact that the efficiency of iron fertilization depends on the long term fate of the added iron and on the carbon associated with it makes tracking the effects of iron fertilization much more difficult and expensive than has been asserted. Additionally, advection of low nutrient water away from iron-rich areas can result in lowering production remotely, with potentially serious consequences. INTRODUCTION The idea of offsetting anthropogenic carbon dioxide emissions by fertilizing the ocean with iron has a number of superficially attractive features. A host of iron fertilization experiments have demonstrated that adding iron to surface waters leads to a local increase in productivity [see for example Coale et al., 1996]. Our own survey of the literature [Dunne et al. subm.] shows that this should be expected to lead to a local increase in particle export. It is claimed however, that this local increase in particle export would necessarily lead to an easily verifiable drawdown in atmospheric carbon dioxide. It is further claimed that the increase in export is controllable and environmentally benign, implying that the effects cease as soon as the fertilization stops.
    [Show full text]
  • An Iron Cycle Cascade Governs the Response of Equatorial Pacific Ecosystems to Climate Change
    Received: 19 June 2020 | Revised: 7 August 2020 | Accepted: 9 August 2020 DOI: 10.1111/gcb.15316 PRIMARY RESEARCH ARTICLE An iron cycle cascade governs the response of equatorial Pacific ecosystems to climate change Alessandro Tagliabue1 | Nicolas Barrier2 | Hubert Du Pontavice3,4 | Lester Kwiatkowski5 | Olivier Aumont5 | Laurent Bopp6 | William W. L. Cheung4 | Didier Gascuel3 | Olivier Maury2 1School of Environmental Sciences, University of Liverpool, Liverpool, UK Abstract 2MARBEC (IRD, Univ. Montpellier, CNRS, Earth System Models project that global climate change will reduce ocean net pri- Ifremer), Sète, France mary production (NPP), upper trophic level biota biomass and potential fisheries 3ESE, Ecology and Ecosystem Health, Institut Agro, Rennes, France catches in the future, especially in the eastern equatorial Pacific. However, projec- 4Nippon Foundation-Nereus Program, tions from Earth System Models are undermined by poorly constrained assumptions Institute for the Oceans and Fisheries, regarding the biological cycling of iron, which is the main limiting resource for NPP University of British Columbia, Vancouver, BC, Canada over large parts of the ocean. In this study, we show that the climate change trends 5LOCEAN, Sorbonne Université-CNRS-IRD- in NPP and the biomass of upper trophic levels are strongly affected by modifying MNHN, Paris, France assumptions associated with phytoplankton iron uptake. Using a suite of model ex- 6ENS-LMD, Paris, France periments, we find 21st century climate change impacts on regional NPP range from Correspondence −12.3% to +2.4% under a high emissions climate change scenario. This wide range Alessandro Tagliabue, School of Environmental Sciences, University of arises from variations in the efficiency of iron retention in the upper ocean in the Liverpool, Liverpool, UK.
    [Show full text]
  • Iron Stable Isotopes Track Pelagic Iron Cycling During a Subtropical Phytoplankton Bloom
    Iron stable isotopes track pelagic iron cycling during PNAS PLUS a subtropical phytoplankton bloom Michael J. Ellwooda,1, David A. Hutchinsb, Maeve C. Lohanc, Angela Milnec, Philipp Nasemannd, Scott D. Noddere, Sylvia G. Sanderd, Robert Strzepeka, Steven W. Wilhelmf, and Philip W. Boydg,2 aResearch School of Earth Sciences, Australian National University, Canberra, ACT 2601, Australia; bMarine and Environmental Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089; cSchool of Geography, Earth and Environmental Sciences, University of Plymouth, Plymouth PL4 8AA, United Kingdom; dMarine and Freshwater Chemistry, Department of Chemistry, University of Otago, Dunedin 9054, New Zealand; eNational Institute of Water and Atmospheric Research, Wellington 6021, New Zealand; fDepartment of Microbiology, The University of Tennessee, Knoxville, TN 37996; and gNational Institute of Water and Atmospheric Research Centre for Chemical and Physical Oceanography, Department of Chemistry, University of Otago, Dunedin 9012, New Zealand Edited by Edward A. Boyle, Massachusetts Institute of Technology, Cambridge, MA, and approved December 1, 2014 (received for review November 11, 2014) The supply and bioavailability of dissolved iron sets the magnitude (www.geotraces.org) process voyages (2008 and 2012) designed of surface productivity for ∼40% of the global ocean. The redox to study temporal changes in the biogeochemical cycling of Fe at state, organic complexation, and phase (dissolved versus particu- the same locality in subtropical waters (38°S−39°S, 178°W late) of iron are key determinants of iron bioavailability in the −180°W) within the mesoscale eddy field east of New Zealand marine realm, although the mechanisms facilitating exchange be- (3).
    [Show full text]
  • Microbial Iron Metabolism in Natural Environments Marianne Erbs & Jim Spain
    L I Microbial iron metabolism in natural environments Marianne Erbs & Jim Spain Microbial Diversity 2002 Microbial iron metabolism in natural environments Marianne Erbs & Jim Spain [email protected] [email protected] Abstract The aim of this project was to assess the diversity of iron metabolizing bacteria in several ecological niches by culture-dependent and culture-independent methods. In particular, we wanted to determine whether non-phototrophic, anaerobic nitrate-dependent Fe(II)-oxidizers coexist with aerobic Fe(1I)-oxidizers and facultatively anaerobic Fe(III)-reducers in natural habitats. To this end, we sampled iron-rich sites in freshwater, estuarine and marine environments and enriched for non-phototrophic anaerobic and aerobic Fe(II)-oxidizers. The identification of the two environmentally most important facultatively anaerobic Fe(III) reducers and one aerobic heterotrophic Fe(II)-oxidizer in the sediment samples was carried out by means of fluorescent in situ hybridization (FISH). We were able to culture aerobic Fe(II) oxidizers in gradient tubes from each sample site. Nitrate-reducing Fe(TI)-oxidizers were only found in sediments from a Cranberry Bog. Geobacter, S’hewanella and Leptothrix coexist in Salt Pond at the oxic/anoxic interface. Microbial iron metabolism in natural environments Marianne Erbs & Jim Spain Introduction The significance of bacteria in the biogeochemical cycling of iron has been broadly recognized over the past two decades. In Fig. 1 the role of dissimilatory anaerobic Fe(III)-reducers as well as acidophilic and neutrophilic aerobic Fe(II)-oxidizers, anaerobic phototrophic Fe(II)-oxidizers and facultatively anaerobic nitrate-reducing Fe(11)-oxidizers in the microbial cycling of iron is shown.
    [Show full text]
  • DOE Mission: Carbon Cycling and Sequestration
    APPENDIX C Appendix C. DOE Mission: Carbon Cycling and Sequestration C.1.1. The Climate Change Challenge ..............................................................................................................................228 C.1.2. The Role of Microbes ..................................................................................................................................................229 C.1.3. Microbial Ocean Communities ................................................................................................................................231 C.1.3.1. Photosynthetic Capabilities .......................................................................................................................................231 C.1.3.2. Strategies for Increasing Ocean CO2 Pools ................................................................................................................231 C.1.3.3. GTL’s Vision for Ocean Systems .................................................................................................................................233 C.1.3.3.1. Gaps in Scientific Understanding .............................................................................................................................233 C.1.3.3.2. Scientific and Technological Capabilities Required ..................................................................................................233 C.1.4. Terrestrial Microbial Communities ........................................................................................................................235
    [Show full text]
  • Biogeochemical Cycling of Iron and Phosphorus Under Low Oxygen Conditions
    BIOGEOCHEMICAL CYCLING OF IRON AND PHOSPHORUS UNDER LOW OXYGEN CONDITIONS Dissertation Zur Erlangung des Doktorgrades Dr. rer. nat. der Mathematisch- Naturwissenschaftlichen Fakultät der Christian-Albrechts- Universität zu Kiel vorgelegt von Ulrike Lomnitz Kiel, Mai 2017 Referent: Prof. Dr. Klaus Wallmann Koreferent: PD Dr. Mark Schmidt Tag der mündlichen Prüfung: 14.07.2017 zum Druck genehmigt: 14.07.2017 Erklärung Hiermit erkläre ich, dass ich die vorliegende Doktorarbeit selbstständig und ohne Zuhilfenahme unerlaubter Hilfsmittel erstellt habe. Weder diese noch eine ähnliche Arbeit wurde an einer anderen Abteilung oder Hochschule im Rahmen eines Prüfungsverfahrens veröffentlicht oder zur Veröffentlichung vorgelegt. Ferner versichere ich, dass die Arbeit unter Einhaltung der Regeln guter wissenschaftlicher Praxis der Deutschen Forschungsgemeinschaft entstanden ist. 05.05.2017 Ulrike Lomnitz Abstract Benthic release of the key nutrients iron (Fe) and phosphorus (P) is enhanced from sediments that are impinged by oxygen-deficient bottom waters due to its diminished retention capacity for such redox sensitive elements. Suboxic to anoxic and sometimes even euxinic conditions are recently found in open ocean oxygen minimum zones (OMZs, e.g. Eastern Boundary Upwelling Systems) and marginal seas (e.g. the Black Sea and the Baltic Sea). Recent studies showed that OMZs expanded in the last decades and will further spread in the future. Due to the additional release of bioavailable key nutrients from the sediments in such high productivity regions, several feedback mechanisms can evolve. The scenarios range from positive to neutral and negative consequences on the evolution of the ocean’s oxygen levels. This controversial issue makes it crucial to investigate the biogeochemical cycling of Fe and P in OMZs.
    [Show full text]
  • Feedbacks Between the Nitrogen, Carbon and Oxygen Cycles 1513
    Comp. by: RVijayarajProof0000836003 Date:4/6/08 Time:13:20:09 Stage:First Proof File Path://ppdys1108/Womat3/Production/PRODENV/0000000038/0000009008/ 0000000005/0000836003.3D Proof by: QC by: B978-0-12-372522-6.00035-3, 35 CHAPTER 35 Feedbacks Between the Nitrogen, c0035 Carbon and Oxygen Cycles Ilana Berman-Frank, Yi-bu Chen, Yuan Gao, Katja Fennel, Mick Follows, Allen J. Milligan, and Paul Falkowski Contents 1. Evolutionary History of the N, C, and O Cycles 1512 1.1. Nitrogen in the preoxygenated world/oceans 1512 1.2. Oxygenation of the early atmosphere: The influence of shelf area and nitrogen fixation rates 1513 2. Nitrogen-Fixation, Nitrogenase, and Oxygen. Evolutionary Constraints, Adaptations of Cellular Pathways and Organisms, Feedbacks to Global N, C, O Cycles 1515 2.1. Evolutionary constraints for nitrogen fixation and adaptive strategies 1515 2.2. Adaptive strategies. Oxygen consumption—The Mehler reaction 1520 2.3. Biological feedbacks to the global N, C, and O cycles 1523 3. Sensitivity of the Nitrogen, Carbon, and Oxygen Cycles to Climate Change 1524 3.1. Aeolian iron and stratification of the surface mixed layer in the future 1525 3.2. Interactions of the oxygen and nitrogen cycles: Nitrification and denitrification 1527 3.3. Ocean circulation and the global ocean cycles of nitrogen, oxygen and carbon 1527 3.4. Implications for the global carbon cycle 1529 4. Summary and Conclusions 1530 References 1531 Abstract p0090 The global cycles of nitrogen, carbon, and oxygen are inextricably interconnected via biologically mediated, coupled redox reactions. The primary reactions include nitrogen fixation, nitrification, denitrification, oxygenic photosynthesis, and respiration.
    [Show full text]
  • The Iron Cycle (Fe), Also Known As the Ferrous Wheel, Is the Biogeochemical Cycle of Iron Through the Atmosphere, Hydrosphere, Biosphere and Lithosphere
    CLASS NOTES FOR SEMESTER –IV STUDENTS, Date- 6.5.2020 Dr. Harekrishna Jana Assistant Professor Dept. Of Microbiology Raja N.L.Khan Women’s College B.Sc (HONOURS) MICROBIOLOGY (CBCS STRUCTURE) C-9: ENVIRONMENTAL MICROBIOLOGY (THEORY) SEMESTER –IV Unit 3 Biogeochemical Cycling No. of Hours: 12 Elemental cycles: Iron and manganese Q. What is Iron cycle? Write the importance of Iron Cycle. Ans. Defination: The iron cycle (Fe), also known as the Ferrous Wheel, is the biogeochemical cycle of iron through the atmosphere, hydrosphere, biosphere and lithosphere. While Fe is highly abundant in the Earth's crust, it is less common in oxygenated surface waters. Iron is a key micronutrient in primary productivity, and a limiting nutrient for the growth of plants and animal. Importance: 1. Iron (Fe) follows a geochemical cycle like many other nutrients. Iron is typically released into the soil or into the ocean through the weathering of rocks or through volcanic eruptions. Iron is required to produce chlorophyl, and plants require sufficient iron to perform photosynthesis. 2. Iron is the most abundant element on Eaith and the most frequently utilized transition metal in the biosphere. It is a component of many ceIlular compounds and is involved in numerous physiological functions. Hence, iron is an essential micronutrient for all eukaryotes and the majority of prokaryotes. Prokaryotes that need iron for biosynthesis require micromolar concentrations, levels that are often not available in neutral pH oxic environments. Therefore, prokaryotes have evolved specific acquisition molecules, called siderophores, to increase iron bioavailability. Q. Draw the Iron Cycle and briefly describe the Iron Cycle.
    [Show full text]
  • Whole-Cell Response of the Pennate Diatom Phaeodactylum Tricornutum to Iron Starvation
    Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation Andrew E. Allen*†, Julie LaRoche‡§, Uma Maheswari*, Markus Lommer‡, Nicolas Schauer¶, Pascal J. Lopez*, Giovanni Finazziʈ, Alisdair R. Fernie¶, and Chris Bowler*§** *Centre National de la Recherche Scientifique Unite Mixte de Recherche 8186, Dept of Biology, Ecole Normale Supe´rieure, 46 rue d’Ulm, 75005 Paris, France; ‡Leibniz-Institut fu¨r Meereswissenschaften, 24105 Kiel, Germany; ¶Max Planck Institute of Molecular Plant Physiology, Am Muhlenberg 1, 14476 Potsdam-Golm, Germany; ʈCentre National de la Recherche Scientifique Unite Mixte de Recherche 7141, Universite´Paris 6 Institut de Biologie Physico-Chimique, 13 rue Pierre et Marie Curie, 75005 Paris, France; and **Stazione Zoologica, Villa Comunale, I 80121 Naples, Italy Edited by David M. Karl, University of Hawaii, Honolulu, HI, and approved May 3, 2008 (received for review December 4, 2007) Marine primary productivity is iron (Fe)-limited in vast regions of Table 1. General cellular, physiological, and biochemical the contemporary oceans, most notably the high nutrient low characteristics of Fe-limited P. tricornutum cells and cultures chlorophyll (HNLC) regions. Diatoms often form large blooms upon Fe-limited/ the relief of Fe limitation in HNLC regions despite their prebloom Parameter Fe-limited Fe-replete Fe-replete low cell density. Although Fe plays an important role in controlling Ϯ Ϯ Ϯ diatom distribution, the mechanisms of Fe uptake and adaptation Growth rate 0.18 0.05 0.88 0.01 0.2 0.06 Ferric reductase assay, 0.717 Ϯ 0.03 0.020 Ϯ 0.004 35.9 Ϯ 7.3 to low iron availability are largely unknown.
    [Show full text]
  • Proximity Proteomics in a Marine Diatom Reveals a Putative Cell
    RESEARCH ARTICLE Proximity proteomics in a marine diatom reveals a putative cell surface-to- chloroplast iron trafficking pathway Jernej Turnsˇek1,2,3,4,5,6†, John K Brunson6,7, Maria del Pilar Martinez Viedma8‡, Thomas J Deerinck9, Alesˇ Hora´ k10,11, Miroslav Obornı´k10,11, Vincent A Bielinski12, Andrew Ellis Allen4,6* 1Biological and Biomedical Sciences, The Graduate School of Arts and Sciences, Harvard University, Cambridge, United States; 2Department of Systems Biology, Harvard Medical School, Boston, United States; 3Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, United States; 4Integrative Oceanography Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, United States; 5Center for Research in Biological Systems, University of California San Diego, La Jolla, United States; 6Microbial and Environmental Genomics, J. Craig Venter Institute, La Jolla, United States; 7Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California San Diego, La Jolla, United States; 8Informatics, J. Craig Venter Institute, La Jolla, United States; 9National Center for Microscopy and Imaging Research, University of California San Diego, La Jolla, United States; 10Biology Centre CAS, Institute of Parasitology, Cˇ eske´ Budeˇjovice, Czech Republic; *For correspondence: 11 ˇ [email protected] University of South Bohemia, Faculty of Science, Ceske´ Budeˇjovice, Czech Republic; 12Synthetic Biology and Bioenergy, J. Craig Venter Institute, La Jolla, Present address: †Department of Plant and Microbial Biology, United States University of California, Berkeley, Howard Hughes Medical Institute, University of California, Berkeley, United States; Abstract Iron is a biochemically critical metal cofactor in enzymes involved in photosynthesis, ‡PharmaMar S.A., Madrid, Spain cellular respiration, nitrate assimilation, nitrogen fixation, and reactive oxygen species defense.
    [Show full text]
  • The Biogeochemical Cycle of Iron in the Ocean P
    REVIEW ARTICLE PUBLISHED ONLINE: 26 SEPTEMBER 2010 | DOI: 10.1038/NGEO964 The biogeochemical cycle of iron in the ocean P. W. Boyd1* and M. J. Ellwood2 Advances in iron biogeochemistry have transformed our understanding of the oceanic iron cycle over the past three decades: multiple sources of iron to the ocean were discovered, including dust, coastal and shallow sediments, sea ice and hydrothermal fluids. This new iron is rapidly recycled in the upper ocean by a range of organisms; up to 50% of the total soluble iron pool is turned over weekly in this way in some ocean regions. For example, bacteria dissolve particulate iron and at the same time release compounds — iron-binding ligands — that complex with iron and therefore help to keep it in solution. Sinking particles, on the other hand, also scavenge iron from solution. The balance between these supply and removal processes determines the concentration of dissolved iron in the ocean. Whether this balance, and many other facets of the biogeochemical cycle, will change as the climate warms remains to be seen. ron is undoubtedly the most studied trace element in the ocean, budgets and models. Here, we review the oceanic biogeochemical having received widespread attention since the late 1980s1,2. The cycle of iron and explore the contribution of these sub-themes to Idisproportionate interest in iron stems from the control it was our understanding of this cycle. thought to exert on ocean productivity, the resulting sequestration of carbon into the ocean’s interior, and consequent modulation of Global patterns of ocean iron atmospheric carbon dioxide concentrations in the geological past3.
    [Show full text]
  • The Carbon Cycle and Atmospheric Carbon Dioxide
    3 The Carbon Cycle and Atmospheric Carbon Dioxide Co-ordinating Lead Author I.C. Prentice Lead Authors G.D. Farquhar, M.J.R. Fasham, M.L. Goulden, M. Heimann, V.J. Jaramillo, H.S. Kheshgi, C. Le Quéré, R.J. Scholes, D.W.R. Wallace Contributing Authors D. Archer, M.R. Ashmore, O. Aumont, D. Baker, M. Battle, M. Bender, L.P. Bopp, P. Bousquet, K. Caldeira, P. Ciais, P.M. Cox, W. Cramer, F. Dentener, I.G. Enting, C.B. Field, P. Friedlingstein, E.A. Holland, R.A. Houghton, J.I. House, A. Ishida, A.K. Jain, I.A. Janssens, F. Joos, T. Kaminski, C.D. Keeling, R.F. Keeling, D.W. Kicklighter, K.E. Kohfeld, W. Knorr, R. Law, T. Lenton, K. Lindsay, E. Maier-Reimer, A.C. Manning, R.J. Matear, A.D. McGuire, J.M. Melillo, R. Meyer, M. Mund, J.C. Orr, S. Piper, K. Plattner, P.J. Rayner, S. Sitch, R. Slater, S. Taguchi, P.P. Tans, H.Q. Tian, M.F. Weirig, T. Whorf, A. Yool Review Editors L. Pitelka, A. Ramirez Rojas Contents Executive Summary 185 3.5.2 Interannual Variability in the Rate of Atmospheric CO2 Increase 208 3.1 Introduction 187 3.5.3 Inverse Modelling of Carbon Sources and Sinks 210 3.2 Terrestrial and Ocean Biogeochemistry: 3.5.4 Terrestrial Biomass Inventories 212 Update on Processes 191 3.2.1 Overview of the Carbon Cycle 191 3.6 Carbon Cycle Model Evaluation 213 3.2.2 Terrestrial Carbon Processes 191 3.6.1 Terrestrial and Ocean Biogeochemistry 3.2.2.1 Background 191 Models 213 3.2.2.2 Effects of changes in land use and 3.6.2 Evaluation of Terrestrial Models 214 land management 193 3.6.2.1 Natural carbon cycling on land 214 3.2.2.3 Effects
    [Show full text]