Structuring a Fecal Microbiota Transplantation Center in a University Hospital in Brazil
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Fecal Microbiota Transplantation in Inflammatory Bowel Disease: the Quest for the Holy Grail
REVIEW Fecal microbiota transplantation in inflammatory bowel disease: the quest for the holy grail B Pigneur1,2,3,* and H Sokol3,4,5,6,* Inflammatory bowel disease (IBD) is due to an aberrant immune response toward luminal antigens, probably commensal bacteria, in genetically susceptible subjects and is also influenced by environmental factors. An imbalanced intestinal microbiota known as ‘‘dysbiosis,’’ characterized by an increased proportion of pro-inflammatory microorganisms and a decreased proportion of anti-inflammatory microorganisms, has been repeatedly observed in IBD and is now recognized as a key factor in the gut inflammatory process. Fecal microbiota transplantation (FMT) has gained interest as a novel treatment option in IBD. The goal of FMT in IBD is not only to correct the dysbiosis, but also to restore a normal dialog between the host immune system and the microbiota. Data are still scarce, but the results of the first studies suggest that FMTcould be a promising therapy in IBD. More studies are needed to define the best indications, optimal timing, frequency, mode of delivery, and the optimal donor for each patient. INTRODUCTION has only recently been proven to be efficient in a randomized Although major progress has been achieved in recent years, the control trial.8 Following this study, FMT is now being evaluated pathogenesis of inflammatory bowel disease (IBD) has not yet in several other microbiota-driven diseases and particularly in been fully elucidated. It is generally accepted that IBD is caused IBD. CDI is a pure ecological problem characterized by a defect by an aberrant immune response toward luminal antigens, in gut microbiota barrier properties.9,10 IBD, however, is far most likely commensal bacteria, in genetically susceptible more complex and involves a deregulation of the host-microbes subjects and is also under the influence of environmental cross talk. -
Louisiana Morbidity Report
Louisiana Morbidity Report Office of Public Health - Infectious Disease Epidemiology Section P.O. Box 60630, New Orleans, LA 70160 - Phone: (504) 568-8313 www.dhh.louisiana.gov/LMR Infectious Disease Epidemiology Main Webpage BOBBY JINDAL KATHY KLIEBERT GOVERNOR www.infectiousdisease.dhh.louisiana.gov SECRETARY September - October, 2015 Volume 26, Number 5 Cutaneous Leishmaniasis - An Emerging Imported Infection Louisiana, 2015 Benjamin Munley, MPH; Angie Orellana, MPH; Christine Scott-Waldron, MSPH In the summer of 2015, a total of 3 cases of cutaneous leish- and the species was found to be L. panamensis, one of the 4 main maniasis, all male, were reported to the Department of Health species associated with progression to metastasized mucosal and Hospitals’ (DHH) Louisiana Office of Public Health (OPH). leishmaniasis in some instances. The first 2 cases to be reported were newly acquired, a 17-year- The third case to be reported in the summer of 2015 was from old male and his father, a 49-year-old male. Both had traveled to an Australian resident with an extensive travel history prior to Costa Rica approximately 2 months prior to their initial medical developing the skin lesion, although exact travel history could not consultation, and although they noticed bug bites after the trip, be confirmed. The case presented with a non-healing skin ulcer they did not notice any flies while traveling. It is not known less than 1 cm in diameter on his right leg. The ulcer had been where transmission of the parasite occurred while in Costa Rica, present for 18 months and had not previously been treated. -
( 12 ) United States Patent
US009956282B2 (12 ) United States Patent ( 10 ) Patent No. : US 9 ,956 , 282 B2 Cook et al. (45 ) Date of Patent: May 1 , 2018 ( 54 ) BACTERIAL COMPOSITIONS AND (58 ) Field of Classification Search METHODS OF USE THEREOF FOR None TREATMENT OF IMMUNE SYSTEM See application file for complete search history . DISORDERS ( 56 ) References Cited (71 ) Applicant : Seres Therapeutics , Inc. , Cambridge , U . S . PATENT DOCUMENTS MA (US ) 3 ,009 , 864 A 11 / 1961 Gordon - Aldterton et al . 3 , 228 , 838 A 1 / 1966 Rinfret (72 ) Inventors : David N . Cook , Brooklyn , NY (US ) ; 3 ,608 ,030 A 11/ 1971 Grant David Arthur Berry , Brookline, MA 4 ,077 , 227 A 3 / 1978 Larson 4 ,205 , 132 A 5 / 1980 Sandine (US ) ; Geoffrey von Maltzahn , Boston , 4 ,655 , 047 A 4 / 1987 Temple MA (US ) ; Matthew R . Henn , 4 ,689 ,226 A 8 / 1987 Nurmi Somerville , MA (US ) ; Han Zhang , 4 ,839 , 281 A 6 / 1989 Gorbach et al. Oakton , VA (US ); Brian Goodman , 5 , 196 , 205 A 3 / 1993 Borody 5 , 425 , 951 A 6 / 1995 Goodrich Boston , MA (US ) 5 ,436 , 002 A 7 / 1995 Payne 5 ,443 , 826 A 8 / 1995 Borody ( 73 ) Assignee : Seres Therapeutics , Inc. , Cambridge , 5 ,599 ,795 A 2 / 1997 McCann 5 . 648 , 206 A 7 / 1997 Goodrich MA (US ) 5 , 951 , 977 A 9 / 1999 Nisbet et al. 5 , 965 , 128 A 10 / 1999 Doyle et al. ( * ) Notice : Subject to any disclaimer , the term of this 6 ,589 , 771 B1 7 /2003 Marshall patent is extended or adjusted under 35 6 , 645 , 530 B1 . 11 /2003 Borody U . -
Leptospirosis Importance Leptospirosis Is a Bacterial Zoonosis That Is Common Worldwide, Especially in Developing Countries
Leptospirosis Importance Leptospirosis is a bacterial zoonosis that is common worldwide, especially in developing countries. Organisms are shed in the urine of infected animals, including Weil’s Syndrome, rodents and domesticated animals, which may not show signs of disease. Humans Swamp Fever, Mud Fever, usually become ill after contact with infected urine, or through contact with water, Autumn Fever (Akiyami), soil or food that has been contaminated. Outbreaks have been associated with Swineherd’s Disease, floodwaters. In animals, the clinical signs of leptospirosis are often related to kidney Rice-Field Fever, disease, liver disease or reproductive dysfunction. In humans, many cases are mild or Cane-Cutter’s Fever, asymptomatic, and go unrecognized. In some patients, however, the illness may Hemorrhagic Jaundice, progress to kidney or liver failure, aseptic meningitis, life-threatening pulmonary Stuttgart Disease, hemorrhage and other syndromes. Canicola Fever, Etiology Redwater of Calves Leptospirosis is caused by various species of Leptospira, a spirochete in the family Leptospiraceae, order Spirochaetales. Some Leptospira are harmless saprophytes that reside in the environment, while others are pathogenic. The basic Last Updated: October 2013 unit of Leptospira taxonomy is the serovar. Serovars consist of closely related isolates based on serological reactions to the organism’s lipopolysaccharide. More than 250 pathogenic serovars, and at least 50 nonpathogenic serovars, have been identified. Two different systems are used to classify Leptospira isolates beyond the serovar. Before 1989, all pathogenic isolates belonged to the species L. interrogans and all nonpathogenic organisms were placed in L. biflexa. Leptospira serovars were also grouped, using serological methods, into 24 serogroups. The genus Leptospira has since been reclassified, using genetic techniques, into 21 species. -
Milk, Mucosal Immunity and the Microbiome: Impact on the Neonate Nestlé Nutrition Institute Workshop Series
Milk, Mucosal Immunity and the Microbiome: Impact on the Neonate Nestlé Nutrition Institute Workshop Series Vol. 94 Milk, Mucosal Immunity and the Microbiome: Impact on the Neonate Editors Pearay L. Ogra Buffalo, NY W. Allan Walker Boston, MA Bo Lönnerdal Davis, CA © 2020 Nestlé Nutrition Institute, Switzerland CH 1814 La Tour-de-Peilz S. Karger AG, P.O. Box, CH–4009 Basel (Switzerland) www.karger.com Library of Congress Cataloging-in-Publication Data Names: Nestlé Nutrition Workshop (94th : 2019 : Lausanne, Switzerland), author. | Ogra, Pearay L., editor. | Walker, W. Allan, editor. | Lönnerdal, Bo, 1938- editor. | Nestlé Nutrition Institute, issuing body. Title: Milk, mucosal immunity and the microbiome : impact on the neonate / editors, Pearay L. Ogra, W. Allan Walker, Bo Lönnerdal. Other titles: Nestlé Nutrition Institute workshop series ; v. 94. 1664-2147 Description: Basel ; Hartford : Karger ; Switzerland : Nestlé Nutrition Institute, [2020] | Series: Nestlé Nutrition Institute workshop series, 1664-2147 ; vol. 94 | Includes bibliographical references and index. | Summary: “This publication covers the 94th Nestle Nutritional Institute Workshop, which was designed to provide a comprehensive overview on the latest human milk research and its role in modulating mucosal immunity, the microbiome, and its impact on the neonate. This publication should provide scientific support to anyone seeking a deeper understanding of human milk and its immunological properties, and enlarge the knowledge of those who specialize in human milk research”-- -
(12) United States Patent (10) Patent No.: US 9,533,014 B2 Henn Et Al
USOO9533 014B2 (12) United States Patent (10) Patent No.: US 9,533,014 B2 Henn et al. (45) Date of Patent: *Jan. 3, 2017 (54) SYNERGISTIC BACTERIAL COMPOSITIONS (52) U.S. CI. AND METHODS OF PRODUCTION AND USE CPC .............. A61K 35/74 (2013.01); A23L 33/127 THEREOF (2016.08); A23L 33/135 (2016.08); A61 K 38/13 (2013.01) (71) Applicant: Seres Health, Inc., Cambridge, MA (58) Field of Classification Search (US) None See application file for complete search history. (72) Inventors: Matthew R. Henn, Somerville, MA (56) References Cited (US); Geoffrey von Maltzahn, Boston, MA (US); Anthony Mario D'Onofrio, U.S. PATENT DOCUMENTS Northborough, MA (US); Kevin Daniel Litcofsky, Boston, MA (US); David 3,009,864 A 1 1/1961 Gordon-Aldterton et al. 3,228,838 A 1/1966 Rinfret Arthur Berry, Brookline, MA (US); 3,608,030 A 9, 1971 Tint David N. Cook, Brooklyn, NY (US); 4,077,227 A 3, 1978 Larson Noubar B. Afeyan, Lexington, MA 4,205,132 A 5/1980 Sandline (US); John Grant Aunins, Doylestown, 4,655,047 A 4/1987 Temple 4,689,226 A 8, 1987 Nurmi PA (US) 4,839,281 A 6, 1989 Gorbach et al. 5,196.205 A 3/1993 Borody (73) Assignee: Seres Therapeutics, Inc., Cambridge, 5.425,951 A 6/1995 Goodrich MA (US) 5,436,002 A 7/1995 Payne 5,443,826 A 8/1995 Borody (*) Notice: Subject to any disclaimer, the term of this 5,599,795 A 2f1997 McCann 5,648,206 A 7, 1997 Goodrich patent is extended or adjusted under 35 5,951,977 A 9, 1999 Nisbet et al. -
Vipin Chandra Kalia Editor Quorum Sensing Vs Quorum Quenching: a Battle with No End in Sight Quorum Sensing Vs Quorum Quenching: a Battle with No End in Sight
Vipin Chandra Kalia Editor Quorum Sensing vs Quorum Quenching: A Battle with No End in Sight Quorum Sensing vs Quorum Quenching: A Battle with No End in Sight Vipin Chandra Kalia Editor Quorum Sensing vs Quorum Quenching: A Battle with No End in Sight 123 Editor Vipin Chandra Kalia Microbial Biotechnology and Genomics CSIR-Institute of Genomics and Integrative Biology Delhi, India ISBN 978-81-322-1981-1 ISBN 978-81-322-1982-8 (eBook) DOI 10.1007/978-81-322-1982-8 Springer New Delhi Heidelberg New York Dordrecht London Library of Congress Control Number: 2014947883 © Springer India 2015 This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. Exempted from this legal reservation are brief excerpts in connection with reviews or scholarly analysis or material supplied specifically for the purpose of being entered and executed on a computer system, for exclusive use by the purchaser of the work. Duplication of this publication or parts thereof is permitted only under the provisions of the Copyright Law of the Publisher’s location, in its current version, and permission for use must always be obtained from Springer. Permissions for use may be obtained through RightsLink at the Copyright Clearance Center. Violations are liable to prosecution under the respective Copyright Law. -
Who Speaks for the Microbes?
Special Issue Who Speaks for the Microbes? Stanley Falkow Stanford University School of Medicine, Stanford, California, USA In discussing emerging infectious diseases, slowed and has been replaced by the encroach- the focus is often on the clinical effects of the host- ment of human populations into the domain of parasite relationship, i.e., the impact on the animal species all over the globe. It is little wonder health and survival of humans and animals, that our deliberate destruction of predators and the rather than the examination of the biology of the outgrowth of human populations into virgin land pathogen. It seems fitting to take a moment to with its attendant destruction of habitat led to the reflect on how pathogens “got that way in the first emergence of new diseases such as Lyme disease place.” Thus, while we discuss emerging and murine typhus (spread now by opossums and infections, it is worthwhile to consider that from cat fleas in our slums, instead of by the more classic the beginning of recorded history—in books or rat and rat flea vector—“sic transit gloria mundi”). the pictographs of ancient cultures—infectious diseases have been the leading cause of illness The Enemy Is Us and death. Even today, because of infectious The cartoon character Pogo, invented by Walt diseases most of the world’s population does not Kelly, once announced to his companions that have the luxury of living long enough to succumb “the enemy is us.” I believe that many of what to the chronic diseases of aging. we refer to as emerging diseases are What were and what remain the reasons that characterized better as “diseases of human infectious diseases are still the leading cause of progress.” Thus, many major public health death? I believe there are four answers. -
The Role of Bile-Metabolising Enzymes in the Pathogenesis of Clostridioides Difficile Infection, and the Impact of Faecal Microbiota Transplantation
1 The role of bile-metabolising enzymes in the pathogenesis of Clostridioides difficile infection, and the impact of faecal microbiota transplantation Benjamin Harvey Mullish Division of Integrative Systems Medicine and Digestive Disease, Department of Surgery and Cancer, Faculty of Medicine Imperial College London 2019 Thesis submitted for the degree of Doctor of Philosophy 2 Abstract: The pathogenesis of Clostridioides difficile infection (CDI), and mechanisms of efficacy of faecal microbiota transplant (FMT) in treating recurrent CDI (rCDI), remain poorly- understood. Certain bile acids affect the ability of C. difficile to undergo germination or vegetative growth. Loss of gut microbiota-derived bile-metabolising enzymes may predispose to CDI via perturbation of bile metabolism, and restitution of gut bile-metabolising functionality could mediate FMT’s efficacy. Initially, human samples were analysed, i.e.: 1) biofluids collected from rCDI patients pre- and post-FMT (and their donors), and 2) stool samples from primary CDI patients, including both recurrers and non-recurrers. Analysis included: 16S rRNA gene sequencing; liquid chromatography-mass spectrometry for bile acid profiling; gas chromatography-mass spectrometry for short chain fatty acid (SCFA) quantification; bile salt hydrolase (BSH) enzyme activity; and qPCR of bsh/ baiCD genes involved in bile metabolism. Human results were validated in C. difficile batch cultures and a rCDI mouse model. A reduced proportion of the stool microbiota of rCDI patients pre-FMT contained BSH- producing bacteria compared to donors or post-FMT. Pre-FMT stool was enriched in taurocholic acid (TCA; a potent trigger to C. difficile germination); TCA levels negatively correlated with bacterial genera containing BSH-producing organisms. -
Framework for Rational Donor Selection in Fecal Microbiota Transplant Clinical Trials
medRxiv preprint doi: https://doi.org/10.1101/19000307; this version posted September 26, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license . Article title: Framework for rational donor selection in fecal microbiota transplant clinical trials Short title: Rational donor selection for FMT clinical trials Authors: Claire Duvallet, PhD Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 Center for Microbiome Informatics and Therapeutics, Cambridge, MA 02139 Biobot Analytics, Somerville, MA 02143 Caroline Zellmer, BS OpenBiome, Cambridge, MA 02140 Pratik Panchal, MD MPH OpenBiome, Cambridge, MA 02140 Shrish Budree, MD MBCHB DCH FCPEDS OpenBiome, Cambridge, MA 02140 Majdi Osman, MD MPH OpenBiome, Cambridge, MA 02140 Harvard Medical School, MA 02115 Eric Alm, PhD (corresponding author) Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 Center for Microbiome Informatics and Therapeutics, Cambridge, MA 02139 The Broad Institute of MIT and Harvard, Cambridge, MA 02139 Email: [email protected] Address: 500 Technology Square, NE47-379 Cambridge, MA 02139 Conflicts of interest: E.A. is co-founder of Finch Therapeutics and is on the Board of Directors of OpenBiome. C.Z, P.P, S.B, and M.O. are employed by OpenBiome. These commercial sources of funding do not alter our adherence to PLOS ONE policies on sharing data and materials. NOTE: This preprint reports new research that has not been certified by peer review and should not be used to guide clinical practice. -
The Neonatal Window of Opportunity: Setting Rupted, Drives Far-Ranging Clinical Consequences
e Journal of Immunology VOLUME 198, NUMBER 2 • JANUARY 15, 2017 • WWW.JIMMUNOL.ORG The Macro Influence of the Microbiome am pleased to draw your attention to this, the first ever topical issue of Brief Reviews in The Journal of Immunology. I Through seven Brief Reviews, this issue of The JI high- lights the pervasive impact of the gut microbiome on immune functions, both in the gut and at distal sites, and features a cover chosen from a themed competition for this issue. These compiled Brief Reviews underscore our recent appreci- ation that the far-reaching influence of commensal gut microbes on immune function reflects the coevolution of this symbiotic mi- crobial ecosystem and its mammalian hosts. Authors Torow and Hornef emphasize that the nature of this microbial community in Downloaded from human and mouse early neonates impacts immune homeostasis throughout life (1). Grigg and Sonnenberg explore the reciprocal influence of the identity and localization of the microbiome components on the balance between inflammation and immune homeostasis both within and outside the gut, and point to the therapeutic potential for diseases of chronic inflammation pro- http://www.jimmunol.org/ vided by manipulation of the microbiota-host interactions (2). Elinav and coauthors describe the microbially derived and mi- crobially modified small metabolites whose bioactivity mediates much of the influence on sterile host tissues described in the ac- companying reviews, in part by modulating nutrient content, digestion, inflammation, and epigenetic control of transcription -
A Computational Tool to Identify Unique Drug Targets in Pathogenic Bacteria
UniDrug-Target: A Computational Tool to Identify Unique Drug Targets in Pathogenic Bacteria Sree Krishna Chanumolu, Chittaranjan Rout, Rajinder S. Chauhan* Department of Biotechnology and Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh, India Abstract Background: Targeting conserved proteins of bacteria through antibacterial medications has resulted in both the development of resistant strains and changes to human health by destroying beneficial microbes which eventually become breeding grounds for the evolution of resistances. Despite the availability of more than 800 genomes sequences, 430 pathways, 4743 enzymes, 9257 metabolic reactions and protein (three-dimensional) 3D structures in bacteria, no pathogen- specific computational drug target identification tool has been developed. Methods: A web server, UniDrug-Target, which combines bacterial biological information and computational methods to stringently identify pathogen-specific proteins as drug targets, has been designed. Besides predicting pathogen-specific proteins essentiality, chokepoint property, etc., three new algorithms were developed and implemented by using protein sequences, domains, structures, and metabolic reactions for construction of partial metabolic networks (PMNs), determination of conservation in critical residues, and variation analysis of residues forming similar cavities in proteins sequences. First, PMNs are constructed to determine the extent of disturbances in metabolite production by targeting a protein as drug target. Conservation of pathogen-specific protein’s critical residues involved in cavity formation and biological function determined at domain-level with low-matching sequences. Last, variation analysis of residues forming similar cavities in proteins sequences from pathogenic versus non-pathogenic bacteria and humans is performed. Results: The server is capable of predicting drug targets for any sequenced pathogenic bacteria having fasta sequences and annotated information.