RESEARCH ARTICLE Mantle Branch-Specific RNA Sequences of Moon Scallop Amusium pleuronectes to Identify Shell Color-Associated Genes Rong-lian Huang1,2☯, Zhe Zheng1,2☯, Qing-heng Wang1,2*, Xiao-xia Zhao3, Yue- wen Deng1,2, Yu Jiao1,2, Xiao-dong Du1,2 1 Fishery College, Guangdong Ocean University, Zhanjiang, China, 2 Laboratory of Marine Pearl Culture, Zhanjiang, China, 3 Environment Protection Monitoring Station, Environmental Protection Agency of Zhanjiang, Zhanjiang, China ☯ These authors contributed equally to this work. *
[email protected] Abstract Amusium pleuronectes (Linnaeus) that secretes red- and white-colored valves in two OPEN ACCESS branches of mantle tissues is an excellent model for shell color research. High-throughput Citation: Huang R-l, Zheng Z, Wang Q-h, Zhao X-x, transcriptome sequencing and profiling were applied in this project to reveal the detailed Deng Y-w, Jiao Y, et al. (2015) Mantle Branch- molecular mechanism of this phenotype differentiation. In this study, 50,796,780 and Specific RNA Sequences of Moon Scallop Amusium pleuronectes to Identify Shell Color-Associated 54,361,178 clean reads were generated from the left branch (secreting red valve, RS) and Genes. PLoS ONE 10(10): e0141390. doi:10.1371/ right branch (secreting white valve, WS) using the Illumina Hiseq 2000 platform. De novo journal.pone.0141390 assembly generated 149,375 and 176,652 unigenes with an average length of 764 bp and Editor: Linsheng Song, Institute of Oceanology, 698 bp in RS and WS, respectively. Kyoto encyclopedia of genes and genomes (KEGG) Chinese Academy of Sciences, CHINA metabolic pathway analysis indicated that the differentially expressed genes were involved Received: July 6, 2015 in 228 signaling pathways, and 43 genes were significantly enriched (P<0.01).