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Phylogenetic Relationships of Monocots Based on the Highly Informative Plastid Gene Ndhf Thomas J
Aliso: A Journal of Systematic and Evolutionary Botany Volume 22 | Issue 1 Article 4 2006 Phylogenetic Relationships of Monocots Based on the Highly Informative Plastid Gene ndhF Thomas J. Givnish University of Wisconsin-Madison J. Chris Pires University of Wisconsin-Madison; University of Missouri Sean W. Graham University of British Columbia Marc A. McPherson University of Alberta; Duke University Linda M. Prince Rancho Santa Ana Botanic Gardens See next page for additional authors Follow this and additional works at: http://scholarship.claremont.edu/aliso Part of the Botany Commons Recommended Citation Givnish, Thomas J.; Pires, J. Chris; Graham, Sean W.; McPherson, Marc A.; Prince, Linda M.; Patterson, Thomas B.; Rai, Hardeep S.; Roalson, Eric H.; Evans, Timothy M.; Hahn, William J.; Millam, Kendra C.; Meerow, Alan W.; Molvray, Mia; Kores, Paul J.; O'Brien, Heath W.; Hall, Jocelyn C.; Kress, W. John; and Sytsma, Kenneth J. (2006) "Phylogenetic Relationships of Monocots Based on the Highly Informative Plastid Gene ndhF," Aliso: A Journal of Systematic and Evolutionary Botany: Vol. 22: Iss. 1, Article 4. Available at: http://scholarship.claremont.edu/aliso/vol22/iss1/4 Phylogenetic Relationships of Monocots Based on the Highly Informative Plastid Gene ndhF Authors Thomas J. Givnish, J. Chris Pires, Sean W. Graham, Marc A. McPherson, Linda M. Prince, Thomas B. Patterson, Hardeep S. Rai, Eric H. Roalson, Timothy M. Evans, William J. Hahn, Kendra C. Millam, Alan W. Meerow, Mia Molvray, Paul J. Kores, Heath W. O'Brien, Jocelyn C. Hall, W. John Kress, and Kenneth J. Sytsma This article is available in Aliso: A Journal of Systematic and Evolutionary Botany: http://scholarship.claremont.edu/aliso/vol22/iss1/ 4 Aliso 22, pp. -
Are Mitochondrial Genes Useful for the Analysis of Monocot Relationships?
55 (4) • November 2006: 857–870 Davis & al. • Mitochondrial genes for monocot phylogeny Are mitochondrial genes useful for the analysis of monocot relationships? Jerrold I. Davis1, Gitte Petersen2, Ole Seberg2, Dennis W. Stevenson3, Christopher R. Hardy4, Mark P. Simmons5, Fabian A. Michelangeli3, Douglas H. Goldman6, Lisa M. Campbell3, Chelsea D. Specht7 & James I. Cohen1 1 L. H. Bailey Hortorium and Department of Plant Biology, Cornell University, Ithaca, New York 14853, U.S.A. [email protected] (author for correspondence). 2 Botanical Garden and Museum, Natural History Museum of Denmark, Sølvgade 83, Opg. S, DK-1307 Copenhagen K, Denmark. 3 Institute of Systematic Botany, New York Botanical Garden, Bronx, New York 10458, U.S.A. 4 Department of Biology, Millersville University, Millersville, Pennsylvania 17551, U.S.A. 5 Department of Biology, Colorado State University, Fort Collins, Colorado 80523, U.S.A. 6 Harvard University Herbaria, Harvard University, Cambridge, Massachusetts 02138, U.S.A. 7 Department of Plant and Microbial Biology, University of California, Berkeley, California 94720, U.S.A. A phylogenetic analysis of monocots and related dicots was conducted, using a four-gene matrix consisting of two genes from the plastid genome (matK and rbcL) and two from the mitochondrial genome (atpA/atp1 and cob). The taxon sample includes 101 monocots and 36 dicots, and all four genes were sampled for all 137 taxa. Jackknife support was assessed for clades resolved by the four-gene analysis, and compared to support for the same clades by each of the four three-gene subset matrices, in order to quantify the degree to which each gene contributed to or detracted from support for each clade. -
Borello, Neerabup V1.1
Borrello Family Level 2 Flora Survey – Lot 902 Flynn Drive Neerabup D1 – 17 October 2019 Natural Area Holdings Pty Ltd 99C Lord Street, Whiteman, WA, 6076 Ph: (08) 9209 2767 [email protected] www.naturalarea.com.au Mr Mark Borrello Level 2 Flora Survey – Lot 902 Flynn Drive Neerabup Disclaimer Natural Area Holdings Pty Ltd, trading as Natural Area Consulting Management Services (Natural Area), has prepared this report for the sole use of the Client and for the purposes as stated in the agreement between the Client and Natural Area under which this work was completed. This report may not be relied upon by any other party without the express written agreement of Natural Area. Natural Area has exercised due and customary care in the preparation of this document and has not, unless specifically stated, independently verified information provided by others. No other warranty, expressed or implied, is made in relation to the contents of this report. Therefore, Natural Area assumes no liability for any loss resulting from errors, omission or misrepresentations made by others. This document has been made at the request of the Client. The use of this document by unauthorised third parties without written permission from Natural Area shall be at their own risk, and we accept no duty of care to any such third party. Any recommendations, opinions or findings stated in this report are based on circumstances and facts as they existed at the time Natural Area performed the work. Any changes in such circumstances and facts upon which this document is based may adversely affect any recommendations, opinions or findings contained in this document. -
Ancient Polyploidy and Genome Evolution in Palms
Faculty & Staff Scholarship 2019 Ancient Polyploidy and Genome Evolution in Palms Craig F. Barrett Michael R. McKain Brandon T. Sinn Xue Jun Ge Yuqu Zhang See next page for additional authors Follow this and additional works at: https://researchrepository.wvu.edu/faculty_publications Part of the Biology Commons Authors Craig F. Barrett, Michael R. McKain, Brandon T. Sinn, Xue Jun Ge, Yuqu Zhang, Alexandre Antonelli, and Christine D. Bacon GBE Ancient Polyploidy and Genome Evolution in Palms Craig F. Barrett1,*, Michael R. McKain2, Brandon T. Sinn1, Xue-Jun Ge3, Yuqu Zhang3, Alexandre Antonelli4,5,6, and Christine D. Bacon4,5 1Department of Biology, West Virginia University 2Department of Biological Sciences, University of Alabama 3Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, PR China Downloaded from https://academic.oup.com/gbe/article-abstract/11/5/1501/5481000 by guest on 05 May 2020 4Department of Biological and Environmental Sciences, University of Gothenburg, Sweden 5Gothenburg Global Biodiversity Centre, Go¨ teborg, Sweden 6Royal Botanical Gardens Kew, Richmond, United Kingdom *Corresponding author: E-mail: [email protected]. Accepted: April 19, 2019 Data deposition: This project has been deposited at the NCBI Sequence Read Archive under the accession BioProject (PRJNA313089). Abstract Mechanisms of genome evolution are fundamental to our understanding of adaptation and the generation and maintenance of biodiversity, yet genome dynamics are still poorly characterized in many clades. Strong correlations between variation in genomic attributes and species diversity across the plant tree of life suggest that polyploidy or other mechanisms of genome size change confer selective advantages due to the introduction of genomic novelty. -
Angiosperm Phylogeny Based on 18S/26S Rdna Sequence Data: Constructing a Large Data Set Using Next-Generation Sequence Data Author(S): Vitor H
Angiosperm Phylogeny Based on 18S/26S rDNA Sequence Data: Constructing a Large Data Set Using Next-Generation Sequence Data Author(s): Vitor H. Maia, Matthew A. Gitzendanner, Pamela S. Soltis, Gane Ka-Shu Wong, and Douglas E. Soltis Source: International Journal of Plant Sciences, Vol. 175, No. 6 (July/August 2014), pp. 613- 650 Published by: The University of Chicago Press Stable URL: http://www.jstor.org/stable/10.1086/676675 . Accessed: 02/11/2015 13:34 Your use of the JSTOR archive indicates your acceptance of the Terms & Conditions of Use, available at . http://www.jstor.org/page/info/about/policies/terms.jsp . JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. For more information about JSTOR, please contact [email protected]. The University of Chicago Press is collaborating with JSTOR to digitize, preserve and extend access to International Journal of Plant Sciences. http://www.jstor.org This content downloaded from 23.235.32.0 on Mon, 2 Nov 2015 13:34:26 PM All use subject to JSTOR Terms and Conditions Int. J. Plant Sci. 175(6):613–650. 2014. ᭧ 2014 by The University of Chicago. All rights reserved. 1058-5893/2014/17506-0001$15.00 DOI: 10.1086/676675 ANGIOSPERM PHYLOGENY BASED ON 18S/26S rDNA SEQUENCE DATA: CONSTRUCTING A LARGE DATA SET USING NEXT-GENERATION SEQUENCE DATA Vitor H. Maia,*,†,‡ Matthew A. -
4.0 Technical Appendices
4.0 Technical Appendices Appendix Document Title Author Approval Status A Bushfire Management Plan Eco Logical Australia B Environmental Assessment Report 360 Environmental C Local Water Management Strategy Hyd2o D Transport Impact Assessment Transcore E Engineering Infrastructure Report TABEC Lots 1-38 Caporn Street & Lot 9015 Saponara Drive, Wanneroo | Structure Plan 32 APPENDIX A Bushfire Management Plan Bushfire Management Plan: Local Structure Plan: Caporn Street, Wanneroo Acumen Development Solutions © ECO LOGICAL AUSTRALIA PTY LTD 1 Bushfire Management Plan: Local Structure Plan: Caporn Street, Wanneroo | Acumen Development Solutions DOCUMENT TRACKING Project Name Bushfire Management Plan: Local Structure Plan Caporn Street, Wanneroo Project Number 19PER-12726 Project Manager James Leonard Prepared by James Leonard Reviewed by Daniel Panickar (BPAD Level 3 – 37802) Approved by Daniel Panickar (BPAD Level 3 – 37802) Status Draft Version Number v1 Last saved on 18 August 2020 This report should be cited as ‘Eco Logical Australia 2020. Bushfire Management Plan: Local Structure Plan: Caporn St, Wanneroo . Prepared for Acumen Development Solutions.’ ACKNOWLEDGEMENTS This document has been prepared by Eco Logical Australia Pty Ltd with support from Acumen Development Solutions. Disclaimer This document may only be used for the purpose for which it was commissioned and in accordance with the contract between Eco Logical Australia Pty Ltd and Acumen Development Solutions . The scope of services was defined in consultation with Acumen Development Solutions , by time and budgetary constraints imposed by the client, and the availability of reports and other data on the subject area. Changes to available information, legislation and schedules are made on an ongoing basis and readers should obtain up to date information. -
Rooting Phylogenetic Trees with Distant Outgroups: a Case Study from the Commelinoid Monocots
Rooting Phylogenetic Trees with Distant Outgroups: A Case Study from the Commelinoid Monocots Sean W. Graham,* Richard G. Olmstead,² and Spencer C. H. Barrett³ *Department of Biological Sciences, University of Alberta, Canada; ²Department of Botany, University of Washington; and ³Department of Botany, University of Toronto, Canada Phylogenetic rooting experiments demonstrate that two chloroplast genes from commelinoid monocot taxa that represent the closest living relatives of the pickerelweed family, Pontederiaceae, retain measurable signals regarding the position of that family's root. The rooting preferences of the chloroplast sequences were compared with those for arti®cial sequences that correspond to outgroups so divergent that their signal has been lost completely. These random sequences prefer the three longest branches in the unrooted ingroup topology and do not preferentially root on the branches favored by real outgroup sequences. However, the rooting behavior of the arti®cial sequences is not a simple function of branch length. The random outgroups preferentially root on long terminal ingroup branches, but many ingroup branches comparable in length to those favored by random sequences attract no or few hits. Nonterminal ingroup branches are generally avoided, regardless of their length. Comparisons of the ease of forcing sequences onto suboptimal roots indicate that real outgroups require a substantially greater rooting penalty than random outgroups for around half of the least-parsimonious candidate roots. Although this supports the existence of nonrandomized signal in the real outgroups, it also indicates that there is little power to choose among the optimal and nearly optimal rooting possibilities. A likelihood-based test rejects the hypothesis that all rootings of the subtree using real outgroup sequences are equally good explanations of the data and also eliminates around half of the least optimal candidate roots. -
Flora and Vegetation Tables
Appendix 1: Flora and Vegetation Tables Table 1: Desktop review of Threatened and Priority Flora Table 2: Desktop review of Threatened and Priority Ecological Communities Table 3: Flora species recorded during field survey Table 4: Revegetation Species and Site Suitability Table 1: Desktop review of Threatened and Priority Flora Taxon Conservation Habitat Likelihood TPFL WAHerb TP EPBC Status List Andersonia White/grey sand, Low. Lack of gracilis sandy clay, gravelly suitable habitat in X loam. Winter-wet survey area. areas, near swamps Anigozanthos Grey sand, clay loam. Low. Lack of viridis subsp. Winter-wet suitable habitat in X terraspectans depressions. survey area. Caladenia Grey or brown sand, High. One record huegelii clay loam, Banksia within 5 km and X X woodland suitable habitat present in the site Chamelaucium N/A Low. Outside sp. Gingin known species X range. Diuris micrantha Brown loamy clay. Low. Lack of Winter-wet swamps, in suitable habitat in X shallow water. survey area. Diuris purdiei Grey-black sand, moist. Low. Lack of Winter-wet swamps. suitable habitat in X survey area. Drakaea elastica White or grey sand. Low. Lack of Low-lying situations suitable habitat in X adjoining winter-wet survey area. swamps. Drakaea White-grey sand Low. Outside micrantha known species X Threatened range. Eucalyptus Mallee. Shallow soils Low. Lack of argutifolia over limestone. Slopes suitable habitat in X X X or gullies of limestone survey area. ridges, outcrops Grevillea Gravelly clay, sandy Low. Lack of elongata clay, sand. Road suitable habitat in X verges, swamps, creek survey area. banks. Grevillea Amongst medium Low. -
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Prepared for Harcourts Pty Ltd by Strategen August 2017 Strategen is a trading name of Strategen Environmental Consultants Pty Ltd Level 1, 50 Subiaco Square Road Subiaco WA 6008 ACN: 056 190 419 August 2017 This report (“the report”) has been prepared by Strategen Environmental Consultants Pty Ltd (Strategen) in accordance with the scope of services set out in the contract, or as otherwise agreed, between the Client and Strategen. In some circumstances, a range of factors such as time, budget, access and/or site disturbance constraints may have limited the scope of services. This report is strictly limited to the matters stated in it and is not to be read as extending, by implication, to any other matter in connection with the matters addressed in it. In preparing the report, Strategen has relied upon data and other information provided by the Client and other individuals and organisations, most of which are referred to in the report (“the data”). Except as otherwise expressly stated in the report, Strategen has not verified the accuracy or completeness of the data. To the extent that the statements, opinions, facts, information, conclusions and/or recommendations in the report (“conclusions”) are based in whole or part on the data, those conclusions are contingent upon the accuracy and completeness of the data. Strategen has also not attempted to determine whether any material matter has been omitted from the data. Strategen will not be liable in relation to incorrect conclusions should any data, information or condition be incorrect or have been concealed, withheld, misrepresented or otherwise not fully disclosed to Strategen. -
The Operculum in Pollen of Monocotyledons Carol A
Aliso: A Journal of Systematic and Evolutionary Botany Volume 22 | Issue 1 Article 15 2006 The Operculum in Pollen of Monocotyledons Carol A. Furness Royal Botanic Gardens, Kew Paula J. Rudall Royal Botanic Gardens, Kew Follow this and additional works at: http://scholarship.claremont.edu/aliso Part of the Botany Commons Recommended Citation Furness, Carol A. and Rudall, Paula J. (2006) "The Operculum in Pollen of Monocotyledons," Aliso: A Journal of Systematic and Evolutionary Botany: Vol. 22: Iss. 1, Article 15. Available at: http://scholarship.claremont.edu/aliso/vol22/iss1/15 Pollen Evolution ~9at~2gcyodan Evolution TS Excluding Poales Aliso 22, pp. 191-196 © 2006, Rancho Santa Ana Botanic Garden THE OPERCULUM IN POLLEN OF MONOCOTYLEDONS CAROL A. FURNESS 1 AND PAULA J. RUDALL Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, UK 1 Corresponding author ( c.furness@ rbgkew.org. uk) ABSTRACT Within monocotyledons, monosulcate pollen is the predominant type and probably represents the plesiomorphic condition, but considerable variation occurs in sulcus morphology. An operculum is an exine thickening that covers most of an aperture. Monocot opercula are usually associated with sulci, although they can occur in ulcerate apertures, as in Poaceae. There are several other aperture types closely related to the monosulcate-operculate type, and confusion occurs in the palynological literature between monosulcate-operculate, pontoperculate, disulculate, disulcate, and zona-aperturate (zonasul culate or zonasulcate) pollen. Transmission electron microscopy (TEM) was used to determine the distribution of the thick apertural intine and to accurately identify these aperture types. Operculate pollen most frequently was present in Asparagales (particularly Agavaceae, Doryanthaceae, lridaceae, and Tecophilaeaceae), Liliales (particularly Liliaceae, Melanthiaceae, and Uvulariaceae), and relatively infrequently among commelinid monocots, except for some Arecaceae, Dasypogonaceae, and Poales.