A Checklist of the Plants of the Karkloof Forest, Natal Midlands
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GENOME EVOLUTION in MONOCOTS a Dissertation
GENOME EVOLUTION IN MONOCOTS A Dissertation Presented to The Faculty of the Graduate School At the University of Missouri In Partial Fulfillment Of the Requirements for the Degree Doctor of Philosophy By Kate L. Hertweck Dr. J. Chris Pires, Dissertation Advisor JULY 2011 The undersigned, appointed by the dean of the Graduate School, have examined the dissertation entitled GENOME EVOLUTION IN MONOCOTS Presented by Kate L. Hertweck A candidate for the degree of Doctor of Philosophy And hereby certify that, in their opinion, it is worthy of acceptance. Dr. J. Chris Pires Dr. Lori Eggert Dr. Candace Galen Dr. Rose‐Marie Muzika ACKNOWLEDGEMENTS I am indebted to many people for their assistance during the course of my graduate education. I would not have derived such a keen understanding of the learning process without the tutelage of Dr. Sandi Abell. Members of the Pires lab provided prolific support in improving lab techniques, computational analysis, greenhouse maintenance, and writing support. Team Monocot, including Dr. Mike Kinney, Dr. Roxi Steele, and Erica Wheeler were particularly helpful, but other lab members working on Brassicaceae (Dr. Zhiyong Xiong, Dr. Maqsood Rehman, Pat Edger, Tatiana Arias, Dustin Mayfield) all provided vital support as well. I am also grateful for the support of a high school student, Cady Anderson, and an undergraduate, Tori Docktor, for their assistance in laboratory procedures. Many people, scientist and otherwise, helped with field collections: Dr. Travis Columbus, Hester Bell, Doug and Judy McGoon, Julie Ketner, Katy Klymus, and William Alexander. Many thanks to Barb Sonderman for taking care of my greenhouse collection of many odd plants brought back from the field. -
The Taxonomy, Chorology and Reproductive Biology of Southern Afri Can Meliaceae and Ptaeroxylaceae
Bothalia 16.2: 143-168 (1986) The taxonomy, chorology and reproductive biology of southern Afri can Meliaceae and Ptaeroxylaceae F. WHITE* Keywords: chorology. Meliaceae. Ptaeroxylaceae. reproductive biology, southern Africa, taxonomy ABSTRACT Information is provided on the taxonomy, chorology and reproductive biology of 14 indigenous and two intro duced species of Meliaceae in southern Africa, and on Ptaeroxylon (Ptaeroxylaceae). Two new taxa are described: Nymanieae F. White, tribus nov. and Turraea strevi F. White & B. T. Styles, sp. nov. Nurmonia (Harms) F. White, comb, et stat. nov.. a new section of Turraea L. is created. The account complements the treatments of these families in the Flora o f southern Africa. UITTREKSEL Inligting word verskaf oor die taksonomie. chorologie en voortplantingsbiologie van 14 inheemse en twee inge- voerde spesies van Meliaceae in suidelike Afrika en oor Ptaeroxylon (Ptaeroxylaceae). Twee nuwe taksons word beskryf: Nymanieae F. White, tribus nov. en Turraea strevi F. White & B. T. Styles, sp. nov. Nurmonia (Harms) F. White, comb, et stat. nov., 'n nuwe seksie van Turraea L. word geskep. Hierdie verslag is aanvullend tot die behandelings van hierdie families in die Flora o f southern Africa. CONTENTS The position of Ptaeroxylon and Nyma nia............................................................ 163 Introduction.................................................................143 South African Trichilia: chemistry and Generic and family delimitation..................... .......144 the taxonomist's e y e .......................... 163 The position of Ptaeroxylon.................................144 Conclusions................................................... 163 The position of N ym ania.....................................144 Taxonomy as a visual a rt.............................. 163 The circumscription of Turraea..........................145 The Meliaceae and the chorology of south Notes on individual genera and species ern Africa.................................................. 164 1. -
Summary & Conclusions
Phylogeny and biogeography of Spathelioideae (Rutaceae) Appelhans, M.S. Citation Appelhans, M. S. (2011, November 15). Phylogeny and biogeography of Spathelioideae (Rutaceae). Retrieved from https://hdl.handle.net/1887/18076 Version: Corrected Publisher’s Version Licence agreement concerning inclusion of doctoral thesis License: in the Institutional Repository of the University of Leiden Downloaded from: https://hdl.handle.net/1887/18076 Note: To cite this publication please use the final published version (if applicable). Summary & Conclusions !e Spathelia / Ptaeroxylon clade (=Spathelioideae sensu Chase et al., 1999; =Cneoroideae sensu Kubitzki et al., 2011) correspond to a group of seven small Sapindalean genera. !ese genera have been placed in di"erent families until molecular phylogenetic studies (Chase et al., 1999) revealed their close relationship. However, these relationships were not strongly supported and they are hardly comprehensible from a morphological point of view. In this thesis, detailed molecular phylogenetic and biogeographic studies of this clade are presented. Five chloroplast markers (atpB, psbA-trnH, rbcL, rps16, trnL-trnF) have been se- quenced for all genera (including also Cedrelopsis) and 83.3% of the species and the dataset was analysed using maximum parsimony, maximum likelihood and Bayesian inference for the phylogenetic studies and with Bayesian approaches for the molecular dating and ancestral area reconstruction analyses. Anatomical and morphological characters were (re)investigated by comparing literature -
Evolutionary Consequences of Dioecy in Angiosperms: the Effects of Breeding System on Speciation and Extinction Rates
EVOLUTIONARY CONSEQUENCES OF DIOECY IN ANGIOSPERMS: THE EFFECTS OF BREEDING SYSTEM ON SPECIATION AND EXTINCTION RATES by JANA C. HEILBUTH B.Sc, Simon Fraser University, 1996 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES (Department of Zoology) We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA July 2001 © Jana Heilbuth, 2001 Wednesday, April 25, 2001 UBC Special Collections - Thesis Authorisation Form Page: 1 In presenting this thesis in partial fulfilment of the requirements for an advanced degree at the University of British Columbia, I agree that the Library shall make it freely available for reference and study. I further agree that permission for extensive copying of this thesis for scholarly purposes may be granted by the head of my department or by his or her representatives. It is understood that copying or publication of this thesis for financial gain shall not be allowed without my written permission. The University of British Columbia Vancouver, Canada http://www.library.ubc.ca/spcoll/thesauth.html ABSTRACT Dioecy, the breeding system with male and female function on separate individuals, may affect the ability of a lineage to avoid extinction or speciate. Dioecy is a rare breeding system among the angiosperms (approximately 6% of all flowering plants) while hermaphroditism (having male and female function present within each flower) is predominant. Dioecious angiosperms may be rare because the transitions to dioecy have been recent or because dioecious angiosperms experience decreased diversification rates (speciation minus extinction) compared to plants with other breeding systems. -
Vegetation Survey of Mount Gorongosa
VEGETATION SURVEY OF MOUNT GORONGOSA Tom Müller, Anthony Mapaura, Bart Wursten, Christopher Chapano, Petra Ballings & Robin Wild 2008 (published 2012) Occasional Publications in Biodiversity No. 23 VEGETATION SURVEY OF MOUNT GORONGOSA Tom Müller, Anthony Mapaura, Bart Wursten, Christopher Chapano, Petra Ballings & Robin Wild 2008 (published 2012) Occasional Publications in Biodiversity No. 23 Biodiversity Foundation for Africa P.O. Box FM730, Famona, Bulawayo, Zimbabwe Vegetation Survey of Mt Gorongosa, page 2 SUMMARY Mount Gorongosa is a large inselberg almost 700 sq. km in extent in central Mozambique. With a vertical relief of between 900 and 1400 m above the surrounding plain, the highest point is at 1863 m. The mountain consists of a Lower Zone (mainly below 1100 m altitude) containing settlements and over which the natural vegetation cover has been strongly modified by people, and an Upper Zone in which much of the natural vegetation is still well preserved. Both zones are very important to the hydrology of surrounding areas. Immediately adjacent to the mountain lies Gorongosa National Park, one of Mozambique's main conservation areas. A key issue in recent years has been whether and how to incorporate the upper parts of Mount Gorongosa above 700 m altitude into the existing National Park, which is primarily lowland. [These areas were eventually incorporated into the National Park in 2010.] In recent years the unique biodiversity and scenic beauty of Mount Gorongosa have come under severe threat from the destruction of natural vegetation. This is particularly acute as regards moist evergreen forest, the loss of which has accelerated to alarming proportions. -
Networks in a Large-Scale Phylogenetic Analysis: Reconstructing Evolutionary History of Asparagales (Lilianae) Based on Four Plastid Genes
Networks in a Large-Scale Phylogenetic Analysis: Reconstructing Evolutionary History of Asparagales (Lilianae) Based on Four Plastid Genes Shichao Chen1., Dong-Kap Kim2., Mark W. Chase3, Joo-Hwan Kim4* 1 College of Life Science and Technology, Tongji University, Shanghai, China, 2 Division of Forest Resource Conservation, Korea National Arboretum, Pocheon, Gyeonggi- do, Korea, 3 Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, United Kingdom, 4 Department of Life Science, Gachon University, Seongnam, Gyeonggi-do, Korea Abstract Phylogenetic analysis aims to produce a bifurcating tree, which disregards conflicting signals and displays only those that are present in a large proportion of the data. However, any character (or tree) conflict in a dataset allows the exploration of support for various evolutionary hypotheses. Although data-display network approaches exist, biologists cannot easily and routinely use them to compute rooted phylogenetic networks on real datasets containing hundreds of taxa. Here, we constructed an original neighbour-net for a large dataset of Asparagales to highlight the aspects of the resulting network that will be important for interpreting phylogeny. The analyses were largely conducted with new data collected for the same loci as in previous studies, but from different species accessions and greater sampling in many cases than in published analyses. The network tree summarised the majority data pattern in the characters of plastid sequences before tree building, which largely confirmed the currently recognised phylogenetic relationships. Most conflicting signals are at the base of each group along the Asparagales backbone, which helps us to establish the expectancy and advance our understanding of some difficult taxa relationships and their phylogeny. -
Flowering Plants
Thonner’s analytical key to the families of flowering plants R. Geesink A.J.M. Leeuwenberg C.E. Ridsdale J.F. Veldkamp PUDOC, Centre for Agricultural Leiden University Press Publishing and Documentation The Hague/Boston/London, Wageningen, 1981 1981 R. Geesink-Rijksherbarium, Leiden, Netherlands A. J. M. - Laboratorium Planten- Leeuwenberg voor Plantensystematiek en geografie, Agricultural University, Wageningen, Netherlands C. E. Ridsdale-B. A. Krukoff Botanist of Malesian Botany, Rijksherbarium, Leiden, Netherlands J. F. Veldkamp-Rijksherbarium, Leiden, Netherlands This volume is listed in the Library of Congress Cataloging in Publication Data This is a translated and revised edition of: Anleitung zum Bestimmen der Familien der Bliitenpflanzen, 2nd. ed. 1917, Friedlander, Berlin ISBN 90-6021-479-X ISBN 90 - 6021-462- 5 (series Leiden University Press) © Centre for agricultural publishing and documentation, PUDOC, Wageningen 1981 and Martinus Nijhoff Publishers, The Hague, 1981 stored All rights reserved. No part of this publication may be reproduced, in a retrieval system, or transmitted in any form or by any means, mechanical, photocopying, recording, or otherwise, without the prior written permission of the publishers, Martinus Nijhoff Publishers, P.O. Box 566, 2501 CN The Hague, The Netherlands, and PUDOC, P.O. Box 4, 6700 AA Wageningen, The Netherlands Printed in the Netherlands Contents Preface to the2nd edition (1917) vii Introduction viii Acknowledgements x Franz Thonner-Life (1863-1928) xii Franz Thonner-Bibliography xv Franz Thonner-Derivedworks xviii Franz Thonner-Eponymy xx The Key - Introduction and Notes xxii Scheme for a diagnostic description xxvi Concise key to the major groupings 1 Key to the families 3 Glossary 198 Index 214 'All plants are hybrids, but some are greater bastards than others' Franz Thonner. -
Early Cretaceous Lineages of Monocot Flowering Plants
Early Cretaceous lineages of monocot flowering plants Kåre Bremer* Department of Systematic Botany, Evolutionary Biology Centre, Uppsala University, Norbyva¨gen 18D, SE-752 36 Uppsala, Sweden Edited by Peter H. Raven, Missouri Botanical Garden, St. Louis, MO, and approved February 14, 2000 (received for review October 1, 1999) The phylogeny of flowering plants is now rapidly being disclosed tionally complex and not feasible for dating large trees with by analysis of DNA sequence data, and currently, many Cretaceous several reference fossils. fossils of flowering plants are being described. Combining molec- Herein, the focus is on divergence times for the basal nodes of ular phylogenies with reference fossils of known minimum age the monocot phylogeny, and any precision in dating the upper makes it possible to date the nodes of the phylogenetic tree. The nodes of the tree is not attempted. To this end, mean branch dating may be done by counting inferred changes in sequenced lengths from the terminals to the basal nodes of the tree are genes along the branches of the phylogeny and calculating change calculated. Unequal rates in different lineages are manifested as rates by using the reference fossils. Plastid DNA rbcL sequences and unequal branch lengths counting from the root to the terminals eight reference fossils indicate that Ϸ14 of the extant monocot in phylogenetic trees, and the procedure of calculating mean lineages may have diverged from each other during the Early branch lengths reduces the problem of unequal rates toward the Cretaceous >100 million years B.P. The lineages are very different base of the tree. -
SABONET Report No 18
ii Quick Guide This book is divided into two sections: the first part provides descriptions of some common trees and shrubs of Botswana, and the second is the complete checklist. The scientific names of the families, genera, and species are arranged alphabetically. Vernacular names are also arranged alphabetically, starting with Setswana and followed by English. Setswana names are separated by a semi-colon from English names. A glossary at the end of the book defines botanical terms used in the text. Species that are listed in the Red Data List for Botswana are indicated by an ® preceding the name. The letters N, SW, and SE indicate the distribution of the species within Botswana according to the Flora zambesiaca geographical regions. Flora zambesiaca regions used in the checklist. Administrative District FZ geographical region Central District SE & N Chobe District N Ghanzi District SW Kgalagadi District SW Kgatleng District SE Kweneng District SW & SE Ngamiland District N North East District N South East District SE Southern District SW & SE N CHOBE DISTRICT NGAMILAND DISTRICT ZIMBABWE NAMIBIA NORTH EAST DISTRICT CENTRAL DISTRICT GHANZI DISTRICT KWENENG DISTRICT KGATLENG KGALAGADI DISTRICT DISTRICT SOUTHERN SOUTH EAST DISTRICT DISTRICT SOUTH AFRICA 0 Kilometres 400 i ii Trees of Botswana: names and distribution Moffat P. Setshogo & Fanie Venter iii Recommended citation format SETSHOGO, M.P. & VENTER, F. 2003. Trees of Botswana: names and distribution. Southern African Botanical Diversity Network Report No. 18. Pretoria. Produced by University of Botswana Herbarium Private Bag UB00704 Gaborone Tel: (267) 355 2602 Fax: (267) 318 5097 E-mail: [email protected] Published by Southern African Botanical Diversity Network (SABONET), c/o National Botanical Institute, Private Bag X101, 0001 Pretoria and University of Botswana Herbarium, Private Bag UB00704, Gaborone. -
Using the Checklist N W C
Using the checklist • The arrangement of the checklist is alphabetical by family followed by genus, grouped under Pteridophyta, Gymnosperms, Monocotyledons and Dicotyledons. • All species and synonyms are arranged alphabetically under genus. • Accepted names are in bold print while synonyms or previously-used names are in italics. • In the case of synonyms, the currently used name follows the equals sign (=), and only refers to usage in Zimbabwe. • Distribution information is included under the current name. • The letters N, W, C, E, and S, following each listed taxon, indicate the known distribution of species within Zimbabwe as reflected by specimens in SRGH or cited in the literature. Where the distribution is unknown, we have inserted Distr.? after the taxon name. • All species known or suspected to be fully naturalised in Zimbabwe are included in the list. They are preceded by an asterisk (*). Species only known from planted or garden specimens were not included. Mozambique Zambia Kariba Mt. Darwin Lake Kariba N Victoria Falls Harare C Nyanga Mts. W Mutare Gweru E Bulawayo GREAT DYKEMasvingo Plumtree S Chimanimani Mts. Botswana N Beit Bridge South Africa The floristic regions of Zimbabwe: Central, East, North, South, West. A checklist of Zimbabwean vascular plants A checklist of Zimbabwean vascular plants edited by Anthony Mapaura & Jonathan Timberlake Southern African Botanical Diversity Network Report No. 33 • 2004 • Recommended citation format MAPAURA, A. & TIMBERLAKE, J. (eds). 2004. A checklist of Zimbabwean vascular plants. -
Phylogenetic Relationships of Monocots Based on the Highly Informative Plastid Gene Ndhf Thomas J
Aliso: A Journal of Systematic and Evolutionary Botany Volume 22 | Issue 1 Article 4 2006 Phylogenetic Relationships of Monocots Based on the Highly Informative Plastid Gene ndhF Thomas J. Givnish University of Wisconsin-Madison J. Chris Pires University of Wisconsin-Madison; University of Missouri Sean W. Graham University of British Columbia Marc A. McPherson University of Alberta; Duke University Linda M. Prince Rancho Santa Ana Botanic Gardens See next page for additional authors Follow this and additional works at: http://scholarship.claremont.edu/aliso Part of the Botany Commons Recommended Citation Givnish, Thomas J.; Pires, J. Chris; Graham, Sean W.; McPherson, Marc A.; Prince, Linda M.; Patterson, Thomas B.; Rai, Hardeep S.; Roalson, Eric H.; Evans, Timothy M.; Hahn, William J.; Millam, Kendra C.; Meerow, Alan W.; Molvray, Mia; Kores, Paul J.; O'Brien, Heath W.; Hall, Jocelyn C.; Kress, W. John; and Sytsma, Kenneth J. (2006) "Phylogenetic Relationships of Monocots Based on the Highly Informative Plastid Gene ndhF," Aliso: A Journal of Systematic and Evolutionary Botany: Vol. 22: Iss. 1, Article 4. Available at: http://scholarship.claremont.edu/aliso/vol22/iss1/4 Phylogenetic Relationships of Monocots Based on the Highly Informative Plastid Gene ndhF Authors Thomas J. Givnish, J. Chris Pires, Sean W. Graham, Marc A. McPherson, Linda M. Prince, Thomas B. Patterson, Hardeep S. Rai, Eric H. Roalson, Timothy M. Evans, William J. Hahn, Kendra C. Millam, Alan W. Meerow, Mia Molvray, Paul J. Kores, Heath W. O'Brien, Jocelyn C. Hall, W. John Kress, and Kenneth J. Sytsma This article is available in Aliso: A Journal of Systematic and Evolutionary Botany: http://scholarship.claremont.edu/aliso/vol22/iss1/ 4 Aliso 22, pp. -
Pomegranate: Botany, Horticulture, Breeding
2 Pomegranate: Botany, Horticulture, Breeding D. Holland, K. Hatib, and I. Bar-Ya’akov Section of Deciduous Fruit Trees Sciences Newe Ya’ar Research Center Agricultural Research Organization PO Box 1021 Ramat Yishay, 30095, Israel I. INTRODUCTION II. TAXONOMY AND MORPHOLOGY A. Botanical Classification B. Vegetative Growth C. The Flower D. The Fruit E. Juvenility and Age of Fruiting III. ORIGIN AND GENETIC RESOURCES A. Origin and Cultivating Regions B. Collections and Germplasm IV. HORTICULTURE A. Cultivars 1. India 2. Iran 3. China 4. Turkmenistan and Tajikistan 5. Turkey 6. Israel 7. Spain 8. United States 9. Georgia 10. Tunisia 11. Egypt 12. Saudi Arabia and Iraq 13. Vietnam 14. Morocco 15. Sicily, Italy Horticultural Reviews, Volume 35 Edited by Jules Janick Copyright & 2009 John Wiley & Sons, Inc. 127 128 D. HOLLAND, K. HATIB, AND I. BAR-YA’AKOV B. Irrigation C. Fertilization D. Tree and Orchard Design E. Plant Protection F. Weed Control G. Fruit Physiological Disorders H. Postharvest V. BREEDING VI. HEALTH BENEFITS VII. CONCLUDING REMARKS VIII. ACKNOWLEDGMENTS IX. LITERATURE CITED I. INTRODUCTION Pomegranate (Punica granatum L., Punicaceae) is an ancient, beloved plant and fruit. The name ‘‘pomegranate’’ follows the Latin name of the fruit Malum granatum, which means ‘‘grainy apple.’’ The generic name Punica refers to Pheonicia (Carthage) as a result of mistaken assump- tion regarding its origin. The pomegranate and its usage are deeply embedded in human history, and utilization is found in many ancient human cultures as food and as a medical remedy. Despite this fact, pomegranate culture has always been restricted and generally con- sidered as a minor crop.