viruses Article A Novel RNA Virus in the Parasitoid Wasp Lysiphlebus fabarum: Genomic Structure, Prevalence, and Transmission 1,2, , 1,2 1,2, Martina N. Lüthi * y , Christoph Vorburger and Alice B. Dennis z 1 Institute of Integrative Biology, ETH Zürich, Universitätstrasse 16, 8092 Zürich, Switzerland;
[email protected] (C.V.);
[email protected] (A.B.D.) 2 Eawag, Swiss Federal Institute of Aquatic Science and Technology, Überlandstrasse 133, 8600 Dübendorf, Switzerland * Correspondence:
[email protected] Current address: Institute of Plant Sciences, University of Bern, Altenbergrain 21, 3013 Bern, Switzerland. y Current address: Institute of Biochemistry and Biology, University of Potsdam, Karl-Liebknecht-Strasse z 24–25, 14476 Potsdam, Germany. Received: 17 November 2019; Accepted: 31 December 2019; Published: 3 January 2020 Abstract: We report on a novel RNA virus infecting the wasp Lysiphlebus fabarum, a parasitoid of aphids. This virus, tentatively named “Lysiphlebus fabarum virus” (LysV), was discovered in transcriptome sequences of wasps from an experimental evolution study in which the parasitoids were allowed to adapt to aphid hosts (Aphis fabae) with or without resistance-conferring endosymbionts. Based on phylogenetic analyses of the viral RNA-dependent RNA polymerase (RdRp), LysV belongs to the Iflaviridae family in the order of the Picornavirales, with the closest known relatives all being parasitoid wasp-infecting viruses. We developed an endpoint PCR and a more sensitive qPCR assay to screen for LysV in field samples and laboratory lines. These screens verified the occurrence of LysV in wild parasitoids and identified the likely wild-source population for lab infections in Western Switzerland. Three viral haplotypes could be distinguished in wild populations, of which two were found in the laboratory.