Lecture 24: "Graminoid" Monocots IB 168, Spring 2007 Graminoid
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Evolutionary Consequences of Dioecy in Angiosperms: the Effects of Breeding System on Speciation and Extinction Rates
EVOLUTIONARY CONSEQUENCES OF DIOECY IN ANGIOSPERMS: THE EFFECTS OF BREEDING SYSTEM ON SPECIATION AND EXTINCTION RATES by JANA C. HEILBUTH B.Sc, Simon Fraser University, 1996 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES (Department of Zoology) We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA July 2001 © Jana Heilbuth, 2001 Wednesday, April 25, 2001 UBC Special Collections - Thesis Authorisation Form Page: 1 In presenting this thesis in partial fulfilment of the requirements for an advanced degree at the University of British Columbia, I agree that the Library shall make it freely available for reference and study. I further agree that permission for extensive copying of this thesis for scholarly purposes may be granted by the head of my department or by his or her representatives. It is understood that copying or publication of this thesis for financial gain shall not be allowed without my written permission. The University of British Columbia Vancouver, Canada http://www.library.ubc.ca/spcoll/thesauth.html ABSTRACT Dioecy, the breeding system with male and female function on separate individuals, may affect the ability of a lineage to avoid extinction or speciate. Dioecy is a rare breeding system among the angiosperms (approximately 6% of all flowering plants) while hermaphroditism (having male and female function present within each flower) is predominant. Dioecious angiosperms may be rare because the transitions to dioecy have been recent or because dioecious angiosperms experience decreased diversification rates (speciation minus extinction) compared to plants with other breeding systems. -
JUDD W.S. Et. Al. (1999) Plant Systematics
CHAPTER8 Phylogenetic Relationships of Angiosperms he angiosperms (or flowering plants) are the dominant group of land Tplants. The monophyly of this group is strongly supported, as dis- cussed in the previous chapter, and these plants are possibly sister (among extant seed plants) to the gnetopsids (Chase et al. 1993; Crane 1985; Donoghue and Doyle 1989; Doyle 1996; Doyle et al. 1994). The angio- sperms have a long fossil record, going back to the upper Jurassic and increasing in abundance as one moves through the Cretaceous (Beck 1973; Sun et al. 1998). The group probably originated during the Jurassic, more than 140 million years ago. Cladistic analyses based on morphology, rRNA, rbcL, and atpB sequences do not support the traditional division of angiosperms into monocots (plants with a single cotyledon, radicle aborting early in growth with the root system adventitious, stems with scattered vascular bundles and usually lacking secondary growth, leaves with parallel venation, flow- ers 3-merous, and pollen grains usually monosulcate) and dicots (plants with two cotyledons, radicle not aborting and giving rise to mature root system, stems with vascular bundles in a ring and often showing sec- ondary growth, leaves with a network of veins forming a pinnate to palmate pattern, flowers 4- or 5-merous, and pollen grains predominantly tricolpate or modifications thereof) (Chase et al. 1993; Doyle 1996; Doyle et al. 1994; Donoghue and Doyle 1989). In all published cladistic analyses the “dicots” form a paraphyletic complex, and features such as two cotyle- dons, a persistent radicle, stems with vascular bundles in a ring, secondary growth, and leaves with net venation are plesiomorphic within angio- sperms; that is, these features evolved earlier in the phylogenetic history of tracheophytes. -
Ecological and Evolutionary Significance of Genomic GC Content
Ecological and evolutionary significance of genomic GC PNAS PLUS content diversity in monocots a,1 a a b c,d e a a Petr Smarda , Petr Bures , Lucie Horová , Ilia J. Leitch , Ladislav Mucina , Ettore Pacini , Lubomír Tichý , Vít Grulich , and Olga Rotreklováa aDepartment of Botany and Zoology, Masaryk University, CZ-61137 Brno, Czech Republic; bJodrell Laboratory, Royal Botanic Gardens, Kew, Surrey TW93DS, United Kingdom; cSchool of Plant Biology, University of Western Australia, Perth, WA 6009, Australia; dCentre for Geographic Analysis, Department of Geography and Environmental Studies, Stellenbosch University, Stellenbosch 7600, South Africa; and eDepartment of Life Sciences, Siena University, 53100 Siena, Italy Edited by T. Ryan Gregory, University of Guelph, Guelph, Canada, and accepted by the Editorial Board August 5, 2014 (received for review November 11, 2013) Genomic DNA base composition (GC content) is predicted to signifi- arises from the stronger stacking interaction between GC bases cantly affect genome functioning and species ecology. Although and the presence of a triple compared with a double hydrogen several hypotheses have been put forward to address the biological bond between the paired bases (19). In turn, these interactions impact of GC content variation in microbial and vertebrate organ- seem to be important in conferring stability to higher order isms, the biological significance of GC content diversity in plants structures of DNA and RNA transcripts (11, 20). In bacteria, for remains unclear because of a lack of sufficiently robust genomic example, an increase in GC content correlates with a higher data. Using flow cytometry, we report genomic GC contents for temperature optimum and a broader tolerance range for a spe- 239 species representing 70 of 78 monocot families and compare cies (21, 22). -
(Thurniaceae) by Rabelani Munyai
The copyright of this thesis vests in the author. No quotation from it or information derived from it is to be published without full acknowledgementTown of the source. The thesis is to be used for private study or non- commercial research purposes only. Cape Published by the University ofof Cape Town (UCT) in terms of the non-exclusive license granted to UCT by the author. University A SYSTEMATIC STUDY OF THE SOUTH AFRICAN GENUS PRIONIUM (THURNIACEAE) BY RABELANI MUNYAI Town Cape of University DISSERTATION PRESENTED FOR THE DEGREE OF MASTER OF SCIENCE IN THE DEPARTMENT OF BOTANY, UNIVERSITY OF CAPE TOWN MAY, 2013 Supervisors: Dr M.A Muasya and Dr S.M.B Chimphango i ABSTRACT The South African monocotyledonous plant genus Prionium E. Mey (Thurniaceae; Cyperid clade) is an old, species-poor lineage which split from its sister genus Thurnia about 33–43 million years ago. It is a clonal shrubby macrophyte, widespread within the Fynbos biome in the Cape Floristic Region (CFR) with scattered populations into the Maputaland-Pondoland Region (MPR). This study of the systematics of the genus Prionium investigates whether this old lineage comprising of a single extant species P. serratum, is morphologically, genetically and ecologically impoverished, and identifies apomorphic floral developmental traits in relation to its phylogenetic position as sister to the Cyperid families, Juncaceae and Cyperaceae. Sampling for morphological, molecular and ecological studies was done to obtain representatives from its entire distribution range, falling within the phytogeographic regions of the CFR (North West, NW; South West, SW; Agulhas Plain, AP; Langeberg, LB) and extending into Eastern Cape (South East, SE) and KwaZulu Natal (KZN). -
Nuclear Genes, Matk and the Phylogeny of the Poales
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2018 Nuclear genes, matK and the phylogeny of the Poales Hochbach, Anne ; Linder, H Peter ; Röser, Martin Abstract: Phylogenetic relationships within the monocot order Poales have been well studied, but sev- eral unrelated questions remain. These include the relationships among the basal families in the order, family delimitations within the restiid clade, and the search for nuclear single-copy gene loci to test the relationships based on chloroplast loci. To this end two nuclear loci (PhyB, Topo6) were explored both at the ordinal level, and within the Bromeliaceae and the restiid clade. First, a plastid reference tree was inferred based on matK, using 140 taxa covering all APG IV families of Poales, and analyzed using parsimony, maximum likelihood and Bayesian methods. The trees inferred from matK closely approach the published phylogeny based on whole-plastome sequencing. Of the two nuclear loci, Topo6 supported a congruent, but much less resolved phylogeny. By contrast, PhyB indicated different phylo- genetic relationships, with, inter alia, Mayacaceae and Typhaceae sister to Poaceae, and Flagellariaceae in a basally branching position within the Poales. Within the restiid clade the differences between the three markers appear less serious. The Anarthria clade is first diverging in all analyses, followed by Restionoideae, Sporadanthoideae, Centrolepidoideae and Leptocarpoideae in the matK and Topo6 data, but in the PhyB data Centrolepidoideae diverges next, followed by a paraphyletic Restionoideae with a clade consisting of the monophyletic Sporadanthoideae and Leptocarpoideae nested within them. The Bromeliaceae phylogeny obtained from Topo6 is insufficiently sampled to make reliable statements, but indicates a good starting point for further investigations. -
Analysis of the Small Chromosomal Prionium Serratum (Cyperid)
bioRxiv preprint doi: https://doi.org/10.1101/2020.07.08.193714; this version posted July 9, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Analysis of the small chromosomal Prionium serratum (Cyperid) demonstrates 2 the importance of a reliable method to differentiate between mono- and 3 holocentricity 4 5 Baez, M.1,2,5; Kuo, Y.T.1,5; Dias, Y.1,2; Souza, T.1,3; Boudichevskaia, A.1,4; Fuchs, 6 J.1; Schubert, V.1; Vanzela, A.L.L.3, Pedrosa-Harand, A.2, Houben, A.1,6 7 8 1 Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, 9 06466 Stadt Seeland, Germany 10 2 Laboratory of Plant Cytogenetics and Evolution, Department of Botany, Federal 11 University of Pernambuco, Pernambuco, Brazil 12 3 Laboratory of Cytogenetics and Plant Diversity, Department of General Biology, 13 Center for Biological Sciences, State University of Londrina, Londrina 86057-970, 14 Paraná, Brazil 15 4 KWS SAAT SE & Co. KGaA, 37574, Einbeck, Germany 16 17 5 Shared first authorship 18 6 Corresponding author 19 ORCID: Houben: 0000-0003-3419-239X 20 21 Highlight 22 Prionium serratum is monocentric. Hence, holocentricity did not arise at the origin of 23 the Cyperid clade. 24 25 Running title 26 Prionium serratum is monocentric 27 28 Word count: 7378 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.07.08.193714; this version posted July 9, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. -
Plastome Phylogeny Monocots SI Tables
Givnish et al. – American Journal of Botany – Appendix S2. Taxa included in the across- monocots study and sources of sequence data. Sources not included in the main bibliography are listed at the foot of this table. Order Famiy Species Authority Source Acorales Acoraceae Acorus americanus (Raf.) Raf. Leebens-Mack et al. 2005 Acorus calamus L. Goremykin et al. 2005 Alismatales Alismataceae Alisma triviale Pursh Ross et al. 2016 Astonia australiensis (Aston) S.W.L.Jacobs Ross et al. 2016 Baldellia ranunculoides (L.) Parl. Ross et al. 2016 Butomopsis latifolia (D.Don) Kunth Ross et al. 2016 Caldesia oligococca (F.Muell.) Buchanan Ross et al. 2016 Damasonium minus (R.Br.) Buchenau Ross et al. 2016 Echinodorus amazonicus Rataj Ross et al. 2016 (Rusby) Lehtonen & Helanthium bolivianum Myllys Ross et al. 2016 (Humb. & Bonpl. ex Hydrocleys nymphoides Willd.) Buchenau Ross et al. 2016 Limnocharis flava (L.) Buchenau Ross et al. 2016 Luronium natans Raf. Ross et al. 2016 (Rich. ex Kunth) Ranalisma humile Hutch. Ross et al. 2016 Sagittaria latifolia Willd. Ross et al. 2016 Wiesneria triandra (Dalzell) Micheli Ross et al. 2016 Aponogetonaceae Aponogeton distachyos L.f. Ross et al. 2016 Araceae Aglaonema costatum N.E.Br. Henriquez et al. 2014 Aglaonema modestum Schott ex Engl. Henriquez et al. 2014 Aglaonema nitidum (Jack) Kunth Henriquez et al. 2014 Alocasia fornicata (Roxb.) Schott Henriquez et al. 2014 (K.Koch & C.D.Bouché) K.Koch Alocasia navicularis & C.D.Bouché Henriquez et al. 2014 Amorphophallus titanum (Becc.) Becc. Henriquez et al. 2014 Anchomanes hookeri (Kunth) Schott Henriquez et al. 2014 Anthurium huixtlense Matuda Henriquez et al. -
Meristematic Activity of the Endodermis and the Pericycle in the Primary Thickening in Monocotyledons
Anais da Academia Brasileira de Ciências (2005) 77(2): 259-274 (Annals of the Brazilian Academy of Sciences) ISSN 0001-3765 www.scielo.br/aabc Meristematic activity of the Endodermis and the Pericycle in the primary thickening in monocotyledons. Considerations on the “PTM” NANUZA L. DE MENEZES1, DELMIRA C. SILVA2, ROSANI C.O. ARRUDA3, GLADYS F. MELO-DE-PINNA1, VANESSA A. CARDOSO1, NEUZA M. CASTRO4, VERA L. SCATENA5 and EDNA SCREMIN-DIAS6 1Universidade de São Paulo, Instituto de Biociências Rua do Matão 277, Travessa 14, Cx. Postal 11461, Cidade Universitária, 05422-970 São Paulo, SP, Brasil 2Universidade Estadual de Santa Cruz, Departamento de Biologia Campus Soane Nazaré de Andrade, Km16, Rodovia Ilhéus-Itabuna, 45662-000 Ilhéus, BA, Brasil 3Universidade Federal do Estado do Rio de Janeiro, Centro de Ciências Biológicas e da Saúde Av. Pasteur 458, 22290-240 Rio de Janeiro, RJ, Brasil 4Universidade Federal de Uberlândia, Instituto de Biologia Campus Umuarama, Bloco 2D, Sala 28, 3840-902 Uberlândia, MG, Brasil 5Universidade Estadual de São Paulo, Instituto de Biociências de Rio Claro, Departamento de Botânica Av. 24A, 1515, Bela Vista, 13506-900 Rio Claro, SP, Brasil 6Universidade Federal de Mato Grosso do Sul, Centro de Ciências Biológicas e da Saúde(CCBS, DBI) Laboratório de Botânica, Cx. Postal 649, 74070-900 Campo Grande, MS, Brasil Manuscript received on February 11, 2005; accepted for publication on February 16, 2005; contributed by Nanuza L. de Menezes* ABSTRACT This paper proposes a new interpretation for primary thickening in monocotyledons. The anatomy of the vegetative organs of the following species was examined: Cephalostemon riedelianus (Rapataceae), Cyperus papyrus (Cyperaceae), Lagenocarpus rigidus, L. -
Floristic Analysis of the Vogelgat Nature Reserve Cape Province South Africa
1 FLORISTIC ANALYSIS OF THE VOGELGAT NATURE RESERVE CAPE PROVINCE SOUTH AFRICA CHERYL DE LANGE 1992 Thesis presented for the Degree of Master of Science University of Cape Town Supervisor: Prof Eugene Moll (~- -- -,~·\: ~ .. ~ ·~ :·:~}f:'.!) '.:; t/·1l/C 0 '~: (JT ~.,·1 ,7J'.':': t .. ~"·;1, ·: -.·.'.!'f.:' !·u, f'.'--:1:;-: ~~:·.r"':'.r':J.:j\ ; The copyright of this thesis vests in the author. No quotation from it or information derived from it is to be published without full acknowledgementTown of the source. The thesis is to be used for private study or non- commercial research purposes only. Cape Published by the University ofof Cape Town (UCT) in terms of the non-exclusive license granted to UCT by the author. University Town Cape of University Pillansia templemanii L. Bolus 2 ACKNOWLEDGEMENTS I would like to thank Dr and Mrs Ian Williams for all their encouragement during this study and assistance in•' identifying sub-standard plant specimens, as well as Vogelgat Nature Reserve for financial support. Furthermore, thanks must go to Dr Niel Fairall and the Flora Committee of the Specialist Services Branch of the Department of Nature and Environmental Conservation, for their encouragement, without which I would never have come this far. 3 CONTENTS page ACKNOWLEDGEMENTS 1 INTRODUCTION 4 2 METHODS 5 3 RESULTS AND DISCUSSION 6 4 SYSTEMATIC LIST 8 5 REFERENCES 9 4 1 INTRODUCTION Vogelgat Nature Reserve is situated approximately 10 km east from the centre of Hermanus, in the Kleinrivier Mountains (latitude 34°22'45"S and 34°24'20"S; longitude 19°17'45"E and 19°19'45"E; Fig 1) and covers an area of 603 ha. -
Classification, Evolution, and Phylogeny of the Families of Monocotyledons
SMITHSONIAN CONTRIBUTIONS TO BOTANY NUMBER 71 Classification, Evolution, and Phylogeny of the Families of Monocotyledons Aaron Goldberg SMITHSONUN INSTITUTION PRESS Washington, D.C. 1989 ABSTRACT Goldberg, Aaron. Classification, Evolution, and Phylogeny of the Families of Monocotyle- dons. Smithsonian Contributions to Botany, number 71, 74 pages, 41 figures, 2 tables, 1 diagram, 1989.-To some extent classification is subjective. Taxonomists differ in the relative importance they ascribe to particular characters and in the degree of difference between related taxa they deem sufficient to constitute family or ordinal rank. About 250 monocot family names have been published. Those who have attempted an overview of the system at the family level and above in the last quarter century recognize between 45 and 103 monocot families in 14 to 38 orders. I accept 57 families in 18 orders. In Table 1 I give my ordinal allocation of the families and that of 11 recent authors to indicate where there is agreement and where there are differences to be resolved. I have constructed a dendrogram to suggest relationships and degree of advancement of the orders. I have written concise, uniform descriptions of all the families of monocots emphasizing those characters that show trends between families or occur in more than one family. Each family is illustrated by analytical drawings of the flower, fruit, seed, and usually inflorescence. Several species are usually used to show the range of major variation within families and trends toward related families. Monocots and dicots have existed concurrently for most of their history, have been subjected to many of the same ecological pressures, and consequently show similar evolutionary trends. -
Analysis of the Small Chromosomal Prionium Serratum (Cyperid) Demonstrates the Importance of Reliable Methods to Differentiate Between Mono- and Holocentricity
Chromosoma (2020) 129:285–297 https://doi.org/10.1007/s00412-020-00745-6 ORIGINAL ARTICLE Analysis of the small chromosomal Prionium serratum (Cyperid) demonstrates the importance of reliable methods to differentiate between mono- and holocentricity M. Baez1,2 & Y. T. Kuo1 & Y. Dias1,2 & T. Souza1,3 & A. Boudichevskaia1,4 & J. Fuchs1 & V. Schubert1 & A. L. L. Vanzela3 & A. Pedrosa-Harand2 & A. Houben1 Received: 13 July 2020 /Revised: 27 October 2020 /Accepted: 28 October 2020 / Published online: 9 November 2020 # The Author(s) 2020 Abstract For a long time, the Cyperid clade (Thurniceae-Juncaceae-Cyperaceae) was considered a group of species possessing holocentromeres exclusively. The basal phylogenetic position of Prionium serratum (Thunb.) Drège (Thurniceae) within Cyperids makes this species an important specimen to understand the centromere evolution within this clade. In contrast to the expectation, the chromosomal distribution of the centromere-specific histone H3 (CENH3), alpha-tubulin and different centromere-associated post-translational histone modifications (H3S10ph, H3S28ph and H2AT120ph) demonstrate a monocentromeric organisation of P. serratum chromosomes. Analysis of the high-copy repeat composition resulted in the identification of two centromere-localised satellite repeats. Hence, monocentricity was the ancestral condition for the Juncaceae-Cyperaceae-Thurniaceae Cyperid clade, and holocentricity in this clade has independently arisen at least twice after differentiation of the three families, once in Juncaceae and the other one in Cyperaceae. In this context, methods suitable for the identification of holocentromeres are discussed. Keywords CENH3/CENPA . Centromere type . Holocentric chromosome . Evolution . Cyperids . Thurniceae Introduction chromosome (monocentromere) visible as a primary constric- tion during metaphase. However, in independent eukaryotic Centromeres are essential for the segregation of chromosomes taxa, species with chromosomes without distinct primary con- to the daughter cells during mitosis and meiosis. -
Database and Atlas of Aquatic Vascular Plants the British Isles
f t 3 DATABASE AND ATLAS OF AQUATIC VASCULAR PLANTS THE BRITISH ISLES Part I : Species Accounts ITE NRA National Rivers Authority Project Record 352/2/N&Y ' NRA 352/2/N&Y fG 'S-C NATIONAL RIVERSAUTHCJRITY Database ami-*rtflas o-f a q u a tlp -^ 7 a s c u 1 ar p la n ts i j A JXC -tfT 1 so . 00 Database and Atlas of Aquatic Vascular Plants in the British Isles Part I: Species Accounts C D Preston and J M Croft Research Contractor: Institute of Freshwater Ecology Monks Wood Abbots Ripton Huntingdon Cambridge PE17 2LS National Rivers Authority Rivers House Waterside Drive Almondsbury Bristol BS12 4UD Project Record 352/2/N&Y ENVIRONMENT AGENCY 136210 Commissioning Organisation National Rivers Authority Rivers House Waterside Drive Almondsbury . Bristol BS12 4UD Tel: 01454 624400 Fax: 01454 624409 ® National Rivers Authority 1995 . All rights reserved. No part of this document may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording or otherwise without the prior permission of the National Rivers Authority. The views expressed in this document are not necessarily those of the NRA. Its officers, servants or agents accept no liability for any loss or damage arising from the interpretation or use of the information, or reliance upon views contained herein. Dissemination Status Internal: Limited Release External: Restricted Statement of Use This document provides information on the occurrence and distribution of aquatic plants in Britain and provides a valuable source of data fro NRA staff.