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Oddpols 2021 International Conference on Transcription Mechanism and Regulation Table of Contents: Oddpols 2021 Organizers and Sponsors

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Oddpols 2021 International Conference on Transcription Mechanism and Regulation Table of Contents: Oddpols 2021 Organizers and Sponsors OddPols 2021 International Conference on Transcription Mechanism and Regulation Table of Contents: OddPols 2021 Organizers and Sponsors.............................................................................1 Call for Summations and Papers............................................................................................2 Information for Zoom Breakout Rooms and Socialization.....................................................3 OddPols 2021 Virtual Schedule .............................................................................................4 Day 1.............................................................................................................................4 Day 2.............................................................................................................................6 Day 3.............................................................................................................................8 Day 4...........................................................................................................................10 Day 5...........................................................................................................................12 Abstracts..............................................................................................................................14 Participant Directory..........................................................................................................137 Organizing Committee: Craig Cameron, U. of North Carolina Astrid Roy-Engel, Tulane U. David Engelke, U. of Colorado Tom Santangelo, Colorado State U. Olivier Gadal, CNRS, CBI, Toulouse David Schneider, U. of Alabama Ross Hannan, Austrailian National U. Linda Van Dyk, U. of Colorado Rich Maraia, NICHD, NIH, Bethesda Alessandro Vannini, Institute of Christoph Müller, EMBL, Heidelberg Cancer Research, London Craig Pikaard, Indiana U. Finn Werner, U. College, London Thank you to our sponsors: And to those who helped produce this book and virtual conference: Lauren Field Ashley Knox Susan Nagel James Till Jordan Schiefer Cydney Pittenger Betty Downes Christian Crisologo Guidance for Zoom Participation Please see the guidance found on the conference web site (https://gs.ucdenver.edu/oddpols2021/) under “Information for Zoom Participation” COVER IMAGE: “Structure of RNA Polymerase III pre-initiation complex”. Image is from Alessandro Vannini/Jeroen Claus (Phospho Biomedical Animation). The corresponding citation is: Abascal-Palacios, G., Ramsay, E., Beuron, F. et al. Structural basis of RNA polymerase III transcription initiation. Nature 553, 301–306 (2018). https://doi.org/10.1038/nature25441 1 Call for Summations and Papers The OddPols 2021 meeting will be the basis for a Special Edition issue of the journal GENE, edited by Astrid Engel. 1] If you would like your presentation to be included (optional) and summarized accurately in the meeting report, please send the Title, Authors, and a short (100-- 200 word) summary to Astrid by July 15, 2021. We understand that the abstract in the book will not always accurately reflect the final detail in your actual presentation or that you may not wish to include some scientific details of unpublished work. 2] If you would like to publish an original research paper in this volume related to your presentation (though not necessarily identical), please submit your manuscript to GENE (http://www.journals.elsevier.com/gene/) by July 15, 2021, along with suggestions for appropriate reviewers. When submitting, select the option for the special issue (SI OddPols 2021: International Conference on Transcription Mechanism and Regulation) under “choose article type”. Similarly, short communications, long or short review articles on the topic, and methodology reports are encouraged and desired. It would be best to check with Astrid on the topic beforehand to avoid substantial overlap. For examples, see the 2012 and 2014 Special edition: http://www.sciencedirect.com/science/journal/03781119/526/1 Details on format can be found here: https://www.elsevier.com/journals/gene/0378- 1119/guide-for-authors If you have any questions, feel free to contact Astrid ([email protected]). 2 Socialization Zoom Breakout Rooms – During the entirety of the conference (5 hours/day plus optional 6th hour) there will be 30 Zoom breakout rooms devoted to conversations. To go to one of these rooms, simply click on the “Breakout Rooms” icon at the bottom of the Zoom screen and choose the room you want to enter by clicking on the # to the right of it and entering the room. To go back to the main Zoom, just click the “leave room” button These will be numbered as follows: [1] Structure and Function of OddPols and Transcription machinery [2] Regulation of transcription –activators and repressors [3] Regulation of transcription –elongation and termination [4] Chromatin and transcription, including gene silencing [5] Transcription related to genome organization and nuclear structures [6] OddPols in development, genetic disorders, cancer and disease [7] Oddpols links to physiology, aging, and beyond [8] Pol I [9] Pol III [10] Pol IV/V [11] organelle Pols [12] Archaeal Pols [13] Other Pols [14] New England Biolabs display and discussion during Breaks [15] Meet the Editor -Publication and Reviewing Advice for Trainees, Sponsored by Developmental Dynamics (Wednesday Break, or by Appointment with Paul Trainor) [16-30] fifteen numbered but unnamed Zoom rooms for discussion of whatever you like with whomever you like. If you would like to meet another participant for a discussion in a Zoom room, the best tactic is likely to e-mail them which # room you would like to meet them and when. You could also put a private message to them in the Zoom Chat, but these are easy to miss if the recipient is not watching the chat. E-mails of conference participants are at the back of the Abstract book on the web site. 3 OddPols 2021 Virtual Schedule The times shown for the OddPols 2021 sessions reflect the Denver time zone (Mountain Daylight time). Each day the conference will begin promptly at 7:00 AM MDT. Time Zone Conversions for Start Times: Denver New York London Heidelberg Shanghai Canberra 7:00 (AM) 9:00 14:00 15:00 21:00 23:00 Schedule of Sessions (12MT= 12 minute talks, 8MT= 8 minute talks, 3MT= special 3 minute talks) Day 1 (Monday, June 14) 7:00: Introduction, Dave Engelke 7:07 Session 1 (12MT) Marv Paule, Chair Abstract # Speaker Title N/A Marv Paule History of OddPols 15 Kenneth A. Johnson Kinetic and structural basis for inhibition of the SARS coronavirus RNA- dependent RNA polymerase by Remdesivir 16 Katsuhiko Murakami Direct binding of TFEα opens DNA binding cleft of archaeal RNA polymerase 17 Simona Pilotto The structural basis of RNA polymerase inhibition in archaea 8:00 Session 2 (3MT) Elaine Sanij, Chair Abstract # Speaker Title 19 Natalia Zawrotna Depletion of ribosome biogenesis proteins during yeast replicative aging 20 Christophe Dez Investigating RNA Polymerase I regulation using a super-active mutant 21 Alana Belkevich Exploring the interaction specificity between the eukaryotic RNA polymerase ⍺-like subunits 22 Julia Daiß Preparation of human RNA polymerase in close-to-native states 23 Florian B. Heiss Conserved strategies of RNA polymerase I hibernation and activation 24 Nathan Munoff Defining the critical DNA features targeted by RNA polymerase I Core Factor 25 Michael Pilsl Structural basis of RNA polymerase I pre-initiation complex formation and promoter melting 26 Qianmin Wang Structural insights into transcriptional regulation of human RNA polymerase III 27 Robyn Moir Functional characterization of Polr3a hypomyelinating leukodystrophy mutations in the S. cerevisiae homolog, RPC160 4 9:00 Break - Zoom Breakout Rooms 10:00 Session 3 (8MT) Astrid Roy-Engel, Chair Abstract # Speaker Title 29 Izabela Rudzińska Defect in RNA polymerase III assembly in yeast Saccharomyces cerevisiae results in reprogramming of mRNA expression 30 Alexandria Cockrell Transcription drives rDNA spatial organization and nucleolar morphology in fission yeast 31 Jorge Perez-Fernandez Structure probing with MNase tethered to ribosome assembly factors provides insight into the structure of nascent pre-ribosomal RNA 32 Sui Huang Nucleolar Homeostasis Connects with Nuclear Organization 33 Dalen Fultz Assembly of Arabidopsis NOR sequences using ultra-long DNA sequencing and analysis of patterns of rRNA gene variation 34 Emiliana Weiss Unveiling the variability and organization of the ribosomal RNA gene repeats with long sequencing technologies 11:00 Session 4 (12MT) Christoph Mueller, Chair Abstract # Speaker Title 36 Magdalena Boguta Biogenesis of yeast RNA polymerases III involves co- translational assembly mechanism 37 Carlos Fernández-Tornero The role of RNA polymerase I in ribosomal DNA protection against UV light-induced DNA damage 38 Ruth Q. Jacobs Defining the divergent enzymatic properties of the eukaryotic RNA polymerases 39 Akihito Fukudome Structure of RNA-dependent RNA polymerase 2 and its implications for double-stranded RNA synthesis in RNA- directed DNA methylation 12:00 Social Hour in Zoom Breakout Rooms 5 Day 2 (Tuesday, June 15) 7:00 Session 5 (12MT) Finn Werner, Chair Abstract # Speaker Title 41 Rachel McNamar Mammalian PAF49, the ortholog of the nonessential yeast RNA polymerase I subunit RPA34, is essential for rDNA transcription 42 Christoph Engel Structural basis of RNA polymerase I transcription 43 Bruce A. Knutson Molecular Topology of RNA Polymerase I Upstream
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