Phylogenetic Inference and Molecular Evolution in Caecilian Amphibians
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REVISION O F the AFRICAN Caeclllan GENUS
REVISION OFTHE AFRICAN CAEClLlAN GENUS SCHISTOMETOPUM PARKER (AMPH IBIA: CYMNOPHIONA: CAECILI IDAE) BY RONALD A. NU AND MICHAEL E. PFRENDER MISCELLANEC JS PUBLICATIONS MUSEUM OF ZOOLOGY, UNIVERSITY OF MICHIGAN, NO. 18Fb; ' Ann Arbor, September 2 7, 1 998 ISSN 076-8405 MIS(:ELIANEOUS PUBLICATIONS MUSEUM OF ZOOLOGY, LJNTVERSITY OF MICHIGAN NO. 187 The publicatioils of the M~~sclunof Zoology, The [Jniversity of Michigan, consist PI-irnarilyof two series-the Occasion:~lPapers allti the Miscellaneous Publicatio~ls.Both series were founded by Dc Bryant Walker, Mr. Rradshaw H. Swales, anti Dr. W.W. Newcornb. Occasionally the Museuni publishes contributiorls outside of these series; begirlnirlg in 1990 these are titled Special Publicatio~lsa~ld arc numbered. All submitted ~n;inl~scriptsreceive external review. The Misccllarieous Publications, which include ~l~ollographicstltdies, papers on field and ~II- seuln techniques, and other contributions 11ot within the scope of the Occasio~lalPapers, are pl~b- lishcd separately. It is not intended that they be grouped into volumes. Each 11r11nberhas a title page and, when necessary, a table of co1itelits. Tllc Occasional Papel-s, publication of which was begun in 1913, servc as a medium Sol- original studies based prirlcipally upon the collections in the Museurn. They are issurtl separately. MThen a sufficient number of pages has hcen printed to niakc a volume, a title pagc, table of contenb, and an index are supplied to libraries and individuals on the mailing list for the series. A cornplete list of publications on Birds, Fishes, Insects, Mammals, Moll~~sks,Rcpdles and Amphib- ians, and other topics is available. Address inquiries to the Directt)r, Muse~unof Zoolohy, The lir~ivcr- sity of Michigan, Ann Arbor, Michigarl 48109-1079. -
2020 Conservation Outlook Assessment
IUCN World Heritage Outlook: https://worldheritageoutlook.iucn.org/ Vallée de Mai Nature Reserve - 2020 Conservation Outlook Assessment Vallée de Mai Nature Reserve 2020 Conservation Outlook Assessment SITE INFORMATION Country: Seychelles Inscribed in: 1983 Criteria: (vii) (viii) (ix) (x) In the heart of the small island of Praslin, the reserve has the vestiges of a natural palm forest preserved in almost its original state. The famouscoco de mer, from a palm-tree once believed to grow in the depths of the sea, is the largest seed in the plant kingdom. © UNESCO SUMMARY 2020 Conservation Outlook Finalised on 01 Dec 2020 GOOD WITH SOME CONCERNS The protection and management of Vallée de Mai Nature Reserve is generally effective and is supported by a national legal framework, although there is a lack of a national protected area system. The management authority is very competent and is effectively implementing science-based programs and outreach and education schemes. However, the future of the site’s key value, the coco de mer palm, is still under threat from illegal collection and over-exploitation for its nuts and kernel. The site's management has reduced both commercial harvesting and illegal collection of nuts based on scientific research, although the conservation impacts of these requires further assessment. The National Government and the managing agency are implementing targeted conservation measures and aim to tighten law and legislation to protect the species, which include an increase in penalty for poaching of coco de mer nuts. Current priorities for the Nature Reserve include continuation and expansion of the outreach and education programme; promoting an increase in the size and connectivity of Vallée de Mai within the Praslin Island landscape, with a legally designated buffer zone; increasing anti-poaching; and continuing to control the harvesting of coco de mer seeds while expanding a program of replanting seedlings. -
The Caecilians of the World: a Taxonomic Review by Edward Harrison Taylor Review By: Marvalee H
The Caecilians of the World: A Taxonomic Review by Edward Harrison Taylor Review by: Marvalee H. Wake Copeia, Vol. 1969, No. 1 (Mar. 6, 1969), pp. 216-219 Published by: American Society of Ichthyologists and Herpetologists (ASIH) Stable URL: http://www.jstor.org/stable/1441738 . Accessed: 25/03/2014 11:09 Your use of the JSTOR archive indicates your acceptance of the Terms & Conditions of Use, available at . http://www.jstor.org/page/info/about/policies/terms.jsp . JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. For more information about JSTOR, please contact [email protected]. American Society of Ichthyologists and Herpetologists (ASIH) is collaborating with JSTOR to digitize, preserve and extend access to Copeia. http://www.jstor.org This content downloaded from 192.188.55.3 on Tue, 25 Mar 2014 11:09:44 AM All use subject to JSTOR Terms and Conditions 216 COPEIA, 1969, NO. 1 three year period, some of the latter per- add-not only the Indo-Pacific, but this Indo- sonally by Munro. The book must be used Australian archipelago, the richest area in in conjunction with the checklist "The the world for marine fish species, badly needs Fishes of the New Guinea Region" (Papua more work of this high calibre.-F. H. TAL- and New Guinea Agr. J. 10:97-339, 1958), BOT, Australian Museum, 6-8 College Street, a sizable work in itself, including a full list Sydney, Australia. -
Development of the Tectum in Gymnophiones, with Comparison to Other Amphibians
JOURNAL OF MORPHOLOGY 236:233–246 (1998) Development of the Tectum in Gymnophiones, With Comparison to Other Amphibians ANDREA SCHMIDT1 AND MARVALEE H. WAKE2* 1University of Bremen, Brain Research Institute, 28334 Bremen, Germany 2Department of Integrative Biology and Museum of Vertebrate Zoology, University of California, Berkeley, California 94720-3140 ABSTRACT Tectal development in a number of caecilian (Gymnophiona: Amphibia) species was examined and compared with that in frogs and salamanders. The caecilian optic tectum develops along the same rostrocau- dal and lateromedial gradients as those of frogs and salamanders. However, differences exist in the time course of development. Our data suggest that, as in salamanders, simplification of morphological complexity in caecilians is due to a retardation or loss of late developmental stages. Differences in the time course of development (heterochrony) among different caecilian species are correlated with phylogenetic history as well as with variation in life histories. The most pronounced differences in development occur between the directly developing Hypogeophis rostratus and all other species examined. In this species, the increase in the degree of morphological complexity is greatly accelerated. J. Morphol. 236:233–246, 1998. 1998 Wiley-Liss, Inc. KEY WORDS: caecilian species; late developmental stages; morphological complexity The visual system of amphibians is Despite variable reduction of the visual sys- strongly correlated with phylogenetic his- tem among caecilians, the degree of morpho- tory (Roth et al., ’83, ’90; Wake, ’85; Schmidt logical complexity (lamination and number and Wake, ’91). Differences in the visual of migrated cells) in the most developed cae- system are apparent among the three orders cilian tectum is greater than in that in most of amphibians (frogs [Anura], salamanders salamanders (Schmidt and Wake, ’91, ’97), [Urodela], and caecilians [Gymnophiona]), suggesting that internal dynamics might be as well as among species within each order. -
Gekkotan Lizard Taxonomy
3% 5% 2% 4% 3% 5% H 2% 4% A M A D R Y 3% 5% A GEKKOTAN LIZARD TAXONOMY 2% 4% D ARNOLD G. KLUGE V O 3% 5% L 2% 4% 26 NO.1 3% 5% 2% 4% 3% 5% 2% 4% J A 3% 5% N 2% 4% U A R Y 3% 5% 2 2% 4% 0 0 1 VOL. 26 NO. 1 JANUARY, 2001 3% 5% 2% 4% INSTRUCTIONS TO CONTRIBUTORS Hamadryad publishes original papers dealing with, but not necessarily restricted to, the herpetology of Asia. Re- views of books and major papers are also published. Manuscripts should be only in English and submitted in triplicate (one original and two copies, along with three cop- ies of all tables and figures), printed or typewritten on one side of the paper. Manuscripts can also be submitted as email file attachments. Papers previously published or submitted for publication elsewhere should not be submitted. Final submissions of accepted papers on disks (IBM-compatible only) are desirable. For general style, contributors are requested to examine the current issue of Hamadryad. Authors with access to publication funds are requested to pay US$ 5 or equivalent per printed page of their papers to help defray production costs. Reprints cost Rs. 2.00 or 10 US cents per page inclusive of postage charges, and should be ordered at the time the paper is accepted. Major papers exceeding four pages (double spaced typescript) should contain the following headings: Title, name and address of author (but not titles and affiliations), Abstract, Key Words (five to 10 words), Introduction, Material and Methods, Results, Discussion, Acknowledgements, Literature Cited (only the references cited in the paper). -
A Phylogenomic Approach to Vertebrate Phylogeny Supports a Turtle-Archosaur Affinity and a Possible Paraphyletic Lissamphibia
A Phylogenomic Approach to Vertebrate Phylogeny Supports a Turtle-Archosaur Affinity and a Possible Paraphyletic Lissamphibia The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Fong, Jonathan J., Jeremy M. Brown, Matthew K. Fujita, and Bastien Boussau. 2012. A phylogenomic approach to vertebrate phylogeny supports a turtle-archosaur affinity and a possible paraphyletic lissamphibia. PLoS ONE 7(11): e48990. Published Version doi:10.1371/journal.pone.0048990 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:11731191 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA A Phylogenomic Approach to Vertebrate Phylogeny Supports a Turtle-Archosaur Affinity and a Possible Paraphyletic Lissamphibia Jonathan J. Fong1,2,3*, Jeremy M. Brown2,4, Matthew K. Fujita1,2,5,6, Bastien Boussau2,7 1 Museum of Vertebrate Zoology, University of California, Berkeley, California, United States of America, 2 Department of Integrative Biology, University of California, Berkeley, California, United States of America, 3 College of Natural Sciences, Seoul National University, Seoul, Republic of Korea, 4 Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, United States of America, 5 Museum of Comparative Zoology & Department of Organismic -
Iroquois National Wildlife Refuge Comprehensive Conservation Plan September 2011 Cover Photo Bald Eagle Steve Hillebrand/USFWS
U.S. Fish & Wildlife Service Iroquois National Wildlife Refuge Comprehensive Conservation Plan September 2011 Cover Photo Bald Eagle Steve Hillebrand/USFWS Inset Photos Wood Turtle John Mosesso/NBII Spotted Salamander USFWS Karner Blue Butterfly Joel Trick/USFWS This blue goose, designed by J.N. “Ding” Darling, has become the symbol of the National Wildlife Refuge System. The U.S. Fish and Wildlife Service is the principal Federal agency responsible for conserving, protecting, and enhancing fish, wildlife, plants, and their habitats for the continuing benefit of the American people. The Service manages the 150-million acre National Wildlife Refuge System comprised of more than 550 national wildlife refuges and thousands of waterfowl production areas. It also operates 70 national fish hatcheries and 81 ecological services field stations. The agency enforces Federal wildlife laws, manages migratory bird populations, restores nationally significant fisheries, conserves and restores wildlife habitat such as wetlands, administers the Endangered Species Act, and helps foreign governments with their conservation efforts. It also oversees the Federal Assistance Program which distributes hundreds of millions of dollars in excise taxes on fishing and hunting equipment to state wildlife agencies. Comprehensive Conservation Plans provide long term guidance for management decisions and set forth goals, objectives, and strategies needed to accomplish refuge purposes and identify the Service’s best estimate of future needs. These plans detail program planning levels that are sometimes substantially above current budget allocations and, as such, are primarily for Service strategic planning and program prioritization purposes. The plans do not constitute a commitment for staffing increases, operational and maintenance increases, or funding for future land acquisition. -
The Herpetological Journal Is Published Quarterly by the British Herpetological Society and Is Issued Free to Members
Volume5, Number3 July 1995 ISSN 0268-0 130 THE .·.• HERPETOLOGICAL JOURNAL Nm Published by Indexed in THE BRITISH HERPETOLOGICAL SOCIETY Current Contents The Herpetological Journal is published quarterly by the British Herpetological Society and is issued free to members. Articles are listed in Biological Abstracts, Current Awareness in Biological Sciences, Current Contents, Science Citation Index, and Zoological Record. Applications to purchase copies and/or for details of membership should be made to the Hon. Secretary, British Herpetological Society, The Zoological Society of London, Regent's Park, London NWl 4RY, UK. Instructions to authors are printed inside the back cover. All contributions should be addressed to the Editor (address below). Editor: Richard A. Griffiths, The Durrell Institute of Conservation and Ecology, Kent Research & Development Centre, The University of Kent, Canterbury, Kent CT2 7PD, UK Associate Editors: Siobhan Keeling Leigh Gillett Editorial Board: Pim Arntzen (Bangor) Donald Broadley (Zimbabwe) John Cooper (Rwanda) John Davenport (Millport) Andrew Gardner (Oman) Tim Halliday (Milton Keynes) Michael Klemens (New York) Colin McCarthy (London) Andrew Milner (London) Henk Strijbosch (Nijmegen) Richard Tinsley (Bristol) BRITISH HERPETOLOGICAL SOCIETY Copyright It is a fundamental condition that submitted manuscripts have not been published and will not be simultaneously submitted or published elsewhere. By submitting a manu script, the authors agree that the copyright for their article is transferred to the publisher ifand when the article is accepted for publication. The copyright covers the exclusive rights to reproduce and distribute the article, including reprints and photo graphic reproductions. Permission fo r any such activities must be sought in advance from the Editor. -
Evolution of Cranial Shape in Caecilians (Amphibia: Gymnophiona)
Evol Biol (2014) 41:528–545 DOI 10.1007/s11692-014-9287-2 RESEARCH ARTICLE Evolution of Cranial Shape in Caecilians (Amphibia: Gymnophiona) Emma Sherratt • David J. Gower • Christian Peter Klingenberg • Mark Wilkinson Received: 17 December 2013 / Accepted: 10 June 2014 / Published online: 20 June 2014 Ó Springer Science+Business Media New York 2014 Abstract Insights into morphological diversification can separated by unoccupied morphospace. The empty spaces be obtained from the ways the species of a clade occupy in shape space are unlikely to be caused entirely by morphospace. Projecting a phylogeny into morphospace extinction or incomplete sampling. The main caecilian provides estimates of evolutionary trajectories as lineages clades have different amounts of morphological disparity, diversified information that can be used to infer the but neither clade age nor number of species account for this dynamics of evolutionary processes that produced patterns variation. Cranial shape variation is clearly linked to phy- of morphospace occupation. We present here a large-scale letic divergence, but there is also homoplasy, which is investigation into evolution of morphological variation in attributed to extrinsic factors associated with head-first the skull of caecilian amphibians, a major clade of verte- digging: features of caecilian crania that have been previ- brates. Because caecilians are limbless, predominantly ously argued to correlate with differential microhabitat use fossorial animals, diversification of their skull has occurred and burrowing ability, such as subterminal and terminal within a framework imposed by the functional demands of mouths, degree of temporal fenestration (stegokrotaphy/ head-first burrowing. We examined cranial shape in 141 zygokrotaphy), and eyes covered by bone, have evolved species, over half of known species, using X-ray computed and many combinations occur in modern species. -
Complex Molecular Evolutionary Models and Information Theoretic Approaches Provide Genomic Perspectives on Amphibian Evolution
Complex Molecular Evolutionary Models and Information Theoretic Approaches Provide Genomic Perspectives on Amphibian Evolution Paul M. Hime 16 May, 2017 Blue Waters Symposium [email protected] The Evolution of Life on Earth • All life traces its origins back to a single common ancestor nearly 4 billion years ago • But today, there are tens of millions of species! • Reconstructing the genealogy of life is fundamental to nearly all areas of modern biology. The Evolution of Life on Earth “Nothing in biology makes sense, except in light of evolution” Dobzhansky “Nothing in evolutionary biology makes sense, except in light of phylogeny” All Organisms on Earth Trace Their Origins Back to a Single Common Ancestor Genomes Are Documents of Evolutionary History Organisms’ Genomes Evolve through Time Phylogenetic Reconstruction • Phylogenies are hypotheses about ancestor - descendent relationships. • These can be estimated from genetic data (in the context of a model). • Simple case: enumerate all possible trees, pick the “best”. • Tree space explodes factorially with increasing numbers of taxa. • Use heuristic search strategies to explore tree- and parameter-space. Models in Evolutionary Biology • Evolutionary biology is an inherently historical discipline. • In evolutionary biology, one cannot “replay the tape” of life... • We use statistical approaches to compare competing sets of models, in the light of data which we collect. “All models are wrong. Some are useful.” George Box Data ≠ Information (Except in the Context of an Appropriate Model) -
Comparative Morphology of Caecilian Sperm (Amphibia: Gymnophiona)
JOURNAL OF MORPHOLOGY 221:261-276 (1994) Com parative Morphology of Caecilian Sperm (Amp h i bi a: Gym nop h ion a) MAFWALEE H. WAKE Department of Integrative Biology and Museum of Vertebrate Zoology, University of California, Berkeley, California 94720 ABSTRACT The morphology of mature sperm from the testes of 22 genera and 29 species representing all five families of caecilians (Amphibia: Gymnoph- iona) was examined at the light microscope level in order to: (1)determine the effectiveness of silver-staining techniques on long-preserved, rare material, (2) assess the comparative morphology of sperm quantitatively, (3) compare pat- terns of caecilian sperm morphology with that of other amphibians, and (4) determine if sperm morphology presents any characters useful for systematic analysis. Although patterns of sperm morphology are quite consistent intrage- nerically and intrafamilially, there are inconsistencies as well. Two major types of sperm occur among caecilians: those with very long heads and pointed acrosomes, and those with shorter, wider heads and blunt acrosomes. Several taxa have sperm with undulating membranes on the flagella, but limitations of the technique likely prevented full determination of tail morphology among all taxa. Cluster analysis is more appropriate for these data than is phylogenetic analysis. cc: 1994 Wiley-Liss, Inc. Examination of sperm for purposes of describ- ('70), in a general discussion of aspects of ing comparative sperm morphology within sperm morphology, and especially Fouquette and across lineages -
Płazy Beznogie - Apoda
Biologia i ochrona płazów wypisy z wykładu 3 Płazy beznogie - Apoda Prof. dr hab. Maria Ogielska Zakład Biologii Ewolucyjnej i Ochrony Kręgowców, Instytut Biologii Środowiskowej, Uniwersytet Wrocławski 2013/2014 Systematyka Współcześnie żyjące płazy (Lissamphibia) należą do 3 rzędów: Urodela/Caudata: Salientia/Anura: Apoda/Gymnophiona: 655 gatunków 6342 gatunków (ponad 50% należy 199 gatunków (50% należy do 3 rodzin: do rodziny Plethodontidae) Ranidae, Leptodactylidae i Hylidae) Amphibia Batrachia Urodela Salientia Apoda + + + Triadobatrachus Anura Gymnophiona Caudata Eocaecilia Karaurus Łącznie 7196 gatunków 2013, AmphibiaWeb kopalne płazy beznogie (Apoda)- wczesna Jura, Arizona USA Eocaecilia micropodia Herpetology, F.H. Pough, R.M. Andrews, J.E. Cadle, M.L. Crump, A.H. Savitzky, K.D. Wells, second edition, Prentice Hall, 2001. Apoda - charakterystyka Blisko spokrewnione z najstarszymi płazami sprzed ok. 400 mln lat Pozbawione kończyn i ich obręczy Ciało wydłużone o robakowatym kształcie Większość Apoda żyje w glebie ryjąc korytarze, nieliczne w wodzie (Typhlonectidae) Żyją w tropikach i subtropikach Wielkość: najmniejszy gatunek Grandisonia brevis 1.12 cm, największy Caecilia thomsoni 152 cm (rodzina Caeciliidae – Marszczelcowate) Apoda - charakterystyka Ciało segmentowane: fałdy obejmują ciało częściowo, pierścienie – całkowicie. Pierścienie I-rzędowe odzwierciedlają segmentację ciała, a ich granice przypadają na septy miotomalne. Pierścienie II- i III-rzędowe występują pomiędzy septami. Siphonops annulatus Najbardziej zaawansowane Apoda nie mają pierścieni III-rzędowych. Apoda - narządy zmysłów Ichthyophis kohaoensis Głównym narządem zmysłu są czułki (tentacle) chemoreceptory Apoda - narządy zmysłów Czułki (tentacle): • odbierają bodźce chemiczne do narządu Jacobsona i do dodatkowych opuszek węchowych, • mają funkcje czuciowe, • są narządami unikatowymi wśród kręgowców, • powstały ze zmodyfikowanych mięśni oka i innych struktur związanych z okiem, • posiadają kanał łączący otoczenie z gruczołami Herderiana w oku.