Wnt5a Promotes Frizzled-4 Signalosome Assembly by Stabilizing Cysteine-Rich Domain Dimerization
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A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
EGFR Confers Exquisite Specificity of Wnt9a-Fzd9b Signaling in Hematopoietic Stem Cell Development
bioRxiv preprint doi: https://doi.org/10.1101/387043; this version posted August 7, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Grainger, et al, 2018 EGFR confers exquisite specificity of Wnt9a-Fzd9b signaling in hematopoietic stem cell development Stephanie Grainger1, Nicole Nguyen1, Jenna Richter1,2, Jordan Setayesh1, Brianna Lonquich1, Chet Huan Oon1, Jacob M. Wozniak2,3,4, Rocio Barahona1, Caramai N. Kamei5, Jack Houston1,2, Marvic Carrillo-Terrazas3,4, Iain A. Drummond5,6, David Gonzalez3.4, Karl Willert#,¥,1, and David Traver¥,1,7. ¥co-corresponding authors: [email protected]; [email protected] #Lead contact 1Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, California, 92037, USA. 2Biomedical Sciences Graduate Program, University of California, San Diego, La Jolla, California, 92037, USA. 3Skaggs School of Pharmacy and Pharmaceutical Science, University of California, San Diego, La Jolla, California, 92093, USA. 4Department of Pharmacology, University of California, San Diego, La Jolla, California, 92092 5Massachusetts General Hospital Nephrology Division, Charlestown, Massachusetts, 02129, USA. 6Harvard Medical School, Department of Genetics, Boston MA 02115 7Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, California, 92037, USA. Running title: A mechanism for Wnt-Fzd specificity in hematopoietic stem cells Keywords: hematopoietic stem cell (HSC), Wnt, Wnt9a, human, zebrafish, Fzd, Fzd9b, FZD9, EGFR, APEX2 1 bioRxiv preprint doi: https://doi.org/10.1101/387043; this version posted August 7, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. -
Complement Pathway Biomarkers and Age-Related Macular Degeneration
Eye (2016) 30, 1–14 © 2016 Macmillan Publishers Limited All rights reserved 0950-222X/16 www.nature.com/eye 1 2,3 Complement pathway M Gemenetzi and AJ Lotery REVIEW biomarkers and age- related macular degeneration Abstract In the age-related macular degeneration accounts for 35% of all cases of late AMD and (AMD) ‘inflammation model’, local inflamma- 20% of legal blindness attributable to AMD,4,5 tion plus complement activation contributes to cannot be treated or prevented at the moment the pathogenesis and progression of the dis- and indeed may be increased by anti-VEGF ease. Multiple genetic associations have now therapy.6,7 been established correlating the risk of devel- In this review, we present and comment on opment or progression of AMD. Stratifying the response to both complement and non- patients by their AMD genetic profile may complement-based treatments, in relation to facilitate future AMD therapeutic trials result- complement pathway mechanisms and ing in meaningful clinical trial end points with complement gene regulation of these smaller sample sizes and study duration. mechanisms. We discuss current and potential – Eye (2016) 30, 1 14; doi:10.1038/eye.2015.203; treatments for both wet and dry AMD in relation published online 23 October 2015 to complement pathway pathogenetic 1Royal Eye Unit, Kingston mechanisms. Hospital NHS Foundation Trust, Kingston Upon Thames, UK Introduction The complement system Based on the pioneering work of Dr Judah The innate immune system is composed of 2Southampton Eye Unit, ‘ ’ Folkman, novel research into angiogenesis immunological effectors that provide robust, Southampton University Hospital, Southampton, UK generated the commercial development of drugs immediate, and nonspecific immune responses. -
G Protein-Coupled Receptors
S.P.H. Alexander et al. The Concise Guide to PHARMACOLOGY 2015/16: G protein-coupled receptors. British Journal of Pharmacology (2015) 172, 5744–5869 THE CONCISE GUIDE TO PHARMACOLOGY 2015/16: G protein-coupled receptors Stephen PH Alexander1, Anthony P Davenport2, Eamonn Kelly3, Neil Marrion3, John A Peters4, Helen E Benson5, Elena Faccenda5, Adam J Pawson5, Joanna L Sharman5, Christopher Southan5, Jamie A Davies5 and CGTP Collaborators 1School of Biomedical Sciences, University of Nottingham Medical School, Nottingham, NG7 2UH, UK, 2Clinical Pharmacology Unit, University of Cambridge, Cambridge, CB2 0QQ, UK, 3School of Physiology and Pharmacology, University of Bristol, Bristol, BS8 1TD, UK, 4Neuroscience Division, Medical Education Institute, Ninewells Hospital and Medical School, University of Dundee, Dundee, DD1 9SY, UK, 5Centre for Integrative Physiology, University of Edinburgh, Edinburgh, EH8 9XD, UK Abstract The Concise Guide to PHARMACOLOGY 2015/16 provides concise overviews of the key properties of over 1750 human drug targets with their pharmacology, plus links to an open access knowledgebase of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. The full contents can be found at http://onlinelibrary.wiley.com/doi/ 10.1111/bph.13348/full. G protein-coupled receptors are one of the eight major pharmacological targets into which the Guide is divided, with the others being: ligand-gated ion channels, voltage-gated ion channels, other ion channels, nuclear hormone receptors, catalytic receptors, enzymes and transporters. These are presented with nomenclature guidance and summary information on the best available pharmacological tools, alongside key references and suggestions for further reading. -
Multi-Functionality of Proteins Involved in GPCR and G Protein Signaling: Making Sense of Structure–Function Continuum with In
Cellular and Molecular Life Sciences (2019) 76:4461–4492 https://doi.org/10.1007/s00018-019-03276-1 Cellular andMolecular Life Sciences REVIEW Multi‑functionality of proteins involved in GPCR and G protein signaling: making sense of structure–function continuum with intrinsic disorder‑based proteoforms Alexander V. Fonin1 · April L. Darling2 · Irina M. Kuznetsova1 · Konstantin K. Turoverov1,3 · Vladimir N. Uversky2,4 Received: 5 August 2019 / Revised: 5 August 2019 / Accepted: 12 August 2019 / Published online: 19 August 2019 © Springer Nature Switzerland AG 2019 Abstract GPCR–G protein signaling system recognizes a multitude of extracellular ligands and triggers a variety of intracellular signal- ing cascades in response. In humans, this system includes more than 800 various GPCRs and a large set of heterotrimeric G proteins. Complexity of this system goes far beyond a multitude of pair-wise ligand–GPCR and GPCR–G protein interactions. In fact, one GPCR can recognize more than one extracellular signal and interact with more than one G protein. Furthermore, one ligand can activate more than one GPCR, and multiple GPCRs can couple to the same G protein. This defnes an intricate multifunctionality of this important signaling system. Here, we show that the multifunctionality of GPCR–G protein system represents an illustrative example of the protein structure–function continuum, where structures of the involved proteins represent a complex mosaic of diferently folded regions (foldons, non-foldons, unfoldons, semi-foldons, and inducible foldons). The functionality of resulting highly dynamic conformational ensembles is fne-tuned by various post-translational modifcations and alternative splicing, and such ensembles can undergo dramatic changes at interaction with their specifc partners. -
Wnt/Rspondin/Β-Catenin Signals Control Axonal Sorting and Lineage Progression in Schwann Cell Development
Wnt/Rspondin/β-catenin signals control axonal sorting and lineage progression in Schwann cell development Tamara Grigoryana, Simone Steina, Jingjing Qia, Hagen Wendeb, Alistair N. Garrattc, Klaus-Armin Naved, Carmen Birchmeierb, and Walter Birchmeiera,1 aCancer Research Program and bNeuroscience Program, Max Delbrück Center for Molecular Medicine, 13125 Berlin, Germany; cCenter for Anatomy, Charité University Hospital, 10117 Berlin, Germany; and dDepartment of Neurogenetics, Max Planck Institute for Experimental Medicine, 37075 Göttingen, Germany Edited by Thomas C. Südhof, Stanford University School of Medicine, Stanford, CA, and approved September 26, 2013 (received for review June 2, 2013) During late Schwann cell development, immature Schwann cells organs (24–27). A role of Rspondins and Lgr4–6 receptors in SC segregate large axons from bundles, a process called “axonal ra- development has not been studied. dial sorting.” Here we demonstrate that canonical Wnt signals play Here we define a temporal window of Wnt/β-catenin activity a critical role in radial sorting and assign a role to Wnt and Rspon- and its role in SC lineage progression using mouse genetics and din ligands in this process. Mice carrying β-catenin loss-of-function cell culture techniques. Conditional loss-of-function (LOF) and mutations show a delay in axonal sorting; conversely, gain-of-function gain-of-function (GOF) mutations of β-catenin in mouse SCs mutations result in accelerated sorting. Sorting deficits are accom- produce converse phenotypes: a delay and an acceleration of panied by abnormal process extension, differentiation, and aber- axonal sorting, respectively. Using cultured primary SCs and rant cell cycle exit of the Schwann cells. -
New Developments in Glaucoma Therapy
New Developments in Glaucoma Therapy 100 - Oral Author: Ganesh Prasanna Presenter: Ganesh Prasanna Institution: Alcon Research Ltd Department: Glaucoma Research Ganesh Prasanna, Ph.D. Ocular Biology, Pfizer Global R&D, San Diego, CA 92121 Current affiliation: Alcon Research Ltd., Fort Worth, TX 76134 EFFECT OF PF-04217329 A PRO-DRUG OF A SELECTIVE PROSTAGLANDIN EP2 AGONIST ON INTRAOCULAR PRESSURE IN PRECLINICAL MODELS OF GLAUCOMA Purpose: While prostaglandin FP analogs are leading the therapeutic intervention for glaucoma, new target classes also are being identified with new lead compounds being developed for IOP reduction. One target class currently being investigated includes the prostaglandin EP receptor agonists. Recently PF-04217329 (Taprenepag isopropyl), a prodrug of CP-544326 (active acid metabolite), a potent and selective EP2 receptor agonist, was successfully evaluated for its ocular hypotensive activity in a clinical study involving patients with primary open angle glaucoma. The preclinical attributes of CP-544326 and PF-0421329 will be presented. Methods: PF-04217329 and active acid metabolite, CP-544326 were evaluated in cell based assays for receptor binding and EP2 receptor functional activity were used. Rabbits were used for assessing corneal permeability, ocular pharmacokinetic studies, EP2 receptor activation and IOP, whereas normal dogs and lasered ocular hypertensive cynomolgus monkeys were also used for IOP studies. Results: CP-544326 was found to be a potent and selective EP2 agonist (receptor binding IC50 = 10 nM; functional activity EC50 = 0.25 nM) whose corneal permeability and ocular bioavailability were significantly increased when the compound was dosed as the isopropyl ester prodrug, PF-04217329. Topical ocular dosing of PF-04217329 was well tolerated in preclinical species and caused an elevation of cAMP in aqueous humor/iris-ciliary body indicative of in-vivo EP2 target receptor activation. -
Wnt/Rspondin/Β-Catenin Signals Control Axonal Sorting and Lineage Progression in Schwann Cell Development
Wnt/Rspondin/β-catenin signals control axonal sorting and lineage progression in Schwann cell development Tamara Grigoryana, Simone Steina, Jingjing Qia, Hagen Wendeb, Alistair N. Garrattc, Klaus-Armin Naved, Carmen Birchmeierb, and Walter Birchmeiera,1 aCancer Research Program and bNeuroscience Program, Max Delbrück Center for Molecular Medicine, 13125 Berlin, Germany; cCenter for Anatomy, Charité University Hospital, 10117 Berlin, Germany; and dDepartment of Neurogenetics, Max Planck Institute for Experimental Medicine, 37075 Göttingen, Germany Edited by Thomas C. Südhof, Stanford University School of Medicine, Stanford, CA, and approved September 26, 2013 (received for review June 2, 2013) During late Schwann cell development, immature Schwann cells organs (24–27). A role of Rspondins and Lgr4–6 receptors in SC segregate large axons from bundles, a process called “axonal ra- development has not been studied. dial sorting.” Here we demonstrate that canonical Wnt signals play Here we define a temporal window of Wnt/β-catenin activity a critical role in radial sorting and assign a role to Wnt and Rspon- and its role in SC lineage progression using mouse genetics and din ligands in this process. Mice carrying β-catenin loss-of-function cell culture techniques. Conditional loss-of-function (LOF) and mutations show a delay in axonal sorting; conversely, gain-of-function gain-of-function (GOF) mutations of β-catenin in mouse SCs mutations result in accelerated sorting. Sorting deficits are accom- produce converse phenotypes: a delay and an acceleration of panied by abnormal process extension, differentiation, and aber- axonal sorting, respectively. Using cultured primary SCs and rant cell cycle exit of the Schwann cells. -
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Published OnlineFirst October 3, 2013; DOI: 10.1158/1541-7786.MCR-13-0358 Molecular Cancer Genomics Research A Proangiogenic Signature Is Revealed in FGF-Mediated Bevacizumab-Resistant Head and Neck Squamous Cell Carcinoma Rekha Gyanchandani1,2, Marcus V. Ortega Alves3, Jeffrey N. Myers3, and Seungwon Kim1,2 Abstract Resistance to antiangiogenic therapies is a critical problem that has limited the utility of antiangiogenic agents in clinical settings. However, the molecular mechanisms underlying this resistance have yet to be fully elucidated. In this study, we established a novel xenograft model of acquired resistance to bevacizumab. To identify molecular changes initiated by the tumor cells, we performed human-specific microarray analysis on bevacizumab-sensitive and -resistant tumors. Efficiency analysis identified 150 genes upregulated and 31 genes downregulated in the resistant tumors. Among angiogenesis-related genes, we found upregulation of fibroblast growth factor-2 (FGF2) and fibroblast growth factor receptor-3 (FGFR3) in the resistant tumors. Inhibition of the FGFR in the resistant tumors led to the re- storation of sensitivity to bevacizumab. Furthermore, increased FGF2 production in the resistant cells was found to be mediated by overexpression of upstream genes phospholipase C (PLCg2), frizzled receptor-4 (FZD4), chemokine [C-X3-C motif] (CX3CL1), and chemokine [C-C motif] ligand 5 (CCL5) via extracellular signal-regulated kinase (ERK). In summary, our work has identified an upregulation of a proangiogenic signature in bevacizumab-refractory HNSCC tumors that converges on ERK signaling to upregulate FGF2, which then mediates evasion of anti-VEGF therapy. These findings provide a new strategy on how to enhance the therapeutic efficacy of antiangiogenic therapy. -
MCR-17-2-Highlights 335..335
Molecular Cancer Research Highlights February 2019 * Volume 17 * Number 2 Selected Articles from This Issue Protein-protein interaction network involving genes associated with GO:receptor activity Pan-Cancer Metastasis Correlates TGFBR3 ACVR2A NR2C2 NR2F1 AHR HNF4G HNF4A GRIK5 ARNT CALCRL CRCP ASGR1 TLR4 TLR5 GRID2 et al. DLG3 MED13 CFI TSHR ASGR2 TNFRSF4 CD226 Chen and Zhang Page 476 TLR1 ERBB4 MED17 SEC63 TLR10 AGER GRIA2 NR0B2 MED30 GLP1R LHCGR DERL1 TNFRSF9 ITGB2 KCNJ1 ESRRG NR5A2 Chen and Zhang and colleagues describe a systematic analysis SEC62 SORL1 MERTK BMPR2 GPR183 TRAM1 BMPR1A CFTR KCNH2 GPC6 of molecular correlates of metastasis using The Cancer Genome NRP1 PTPRR EPHB6 CD80 MED14 MED1 PPARA CELSR2 NCAM1 RYK CD86 Atlas (TCGA) datasets across 11 different cancer types, with data PPARG STRA6 EPNA3 LRP2 EFNB2 INTS6 CD28 PIGR ESRRB involving mRNA, microRNA, protein, and DNA methylation. NR4A2 THRAP3 TFRC GRM5 CD79B FLT1 ATP6AP2 NTRK1 INSRR NR3C1 XPR1 While some differential expression patterns associated with FCGR2C KDR ITGB1 CD79A CD3G AMOT ITGA4 IL2RA INSR PTPRC metastasis may be shared across multiple cancer types, each NR2F2 CD4 FZD4 DDR2 CXCR5 CD36 CD46 ITGAV ITGB6 VTN one also shows a metastasis signature that is distinct. When DLG1 CXCR4 CD1D IFNAR1 CALM3 GRM7 CNR1 FZD5 CD55 HCRTR1 combining TCGA data with that from multiple independent ADRB1 GABRR1 CSF1R NPC1 CR2 GABRR2 F2R F2 KCNQ5 CD47 LIFR ANTXR2 MET CD97 GP1BA fi LRP6 CR1 P2RX2 ABCC9 IL6ST pro ling datasets of metastatic tumors, the resulting catalog of FLT4 OSMR PTPRH P2RX4 KCNJ8 CUL5 GHR PTPRB gene-level alterations, according to cancer type, provides a Higher expression in metastasis versus primary for given cancer type BRCA CESC CRC ESCA HNSC PAAD PCPG PRAD SARC SKCM THCA resource for future studies. -
Biophysical and Functional Characterization of Norrin Signaling Through Frizzled4,” by Injin Bang, Hee Ryung Kim, Andrew H
Correction BIOPHYSICS AND COMPUTATIONAL BIOLOGY Correction for “Biophysical and functional characterization of Norrin signaling through Frizzled4,” by Injin Bang, Hee Ryung Kim, Andrew H. Beaven, Jinuk Kim, Seung-Bum Ko, Gyu Rie Lee, Hasup Lee, Wonpil Im, Chaok Seok, Ka Young Chung, and Hee-Jung Choi, which was first published August 13, 2018; 10.1073/ pnas.1805901115 (Proc Natl Acad Sci USA 115:8787–8792). The authors note that Wei Kan should be added to the author list between Gyu Rie Lee and Hasup Lee. Wei Kan should be credited with contributing new reagents/analytic tools and analyz- ing data. The corrected author line, affiliation line, and author contributions appear below. The online version has been corrected. Injin Banga,1, Hee Ryung Kimb,1, Andrew H. Beavenc,2, Jinuk Kima, Seung-Bum Koa, Gyu Rie Leed,3, Wei Kane, Hasup Leed,4, Wonpil Imf,g, Chaok Seokd, Ka Young Chungb,5, and Hee-Jung Choia,5 aDepartment of Biological Sciences, Seoul National University, 08826 Seoul, Republic of Korea; bSchool of Pharmacy, Sungkyunkwan University, 16419 Suwon, Republic of Korea; cDepartment of Chemistry, The University of Kansas, Lawrence, KS 66047; dDepartment of Chemistry, Seoul National University, 08826 Seoul, Republic of Korea; eDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305; fDepartment of Biological Sciences, Lehigh University, Bethlehem, PA 18015; and gDepartment of Bioengineering, Lehigh University, Bethlehem, PA 18015 Author contributions: H.-J.C. designed research; I.B., H.R.K., J.K., and S.-B.K. performed research; W.K. and K.Y.C. contributed new reagents/analytic tools; I.B., H.R.K., A.H.B., G.R.L., W.K., H.L., W.I., C.S., and K.Y.C. -
Supplementary Information
Osa et al Supplementary Information Clinical implications of monitoring nivolumab immunokinetics in previously treated non– small cell lung cancer patients Akio Osa, Takeshi Uenami, Shohei Koyama, Kosuke Fujimoto, Daisuke Okuzaki, Takayuki Takimoto, Haruhiko Hirata, Yukihiro Yano, Soichiro Yokota, Yuhei Kinehara, Yujiro Naito, Tomoyuki Otsuka, Masaki Kanazu, Muneyoshi Kuroyama, Masanari Hamaguchi, Taro Koba, Yu Futami, Mikako Ishijima, Yasuhiko Suga, Yuki Akazawa, Hirotomo Machiyama, Kota Iwahori, Hyota Takamatsu, Izumi Nagatomo, Yoshito Takeda, Hiroshi Kida, Esra A. Akbay, Peter S. Hammerman, Kwok-kin Wong, Glenn Dranoff, Masahide Mori, Takashi Kijima, Atsushi Kumanogoh Supplemental Figures 1 – 8 1 Osa et al Supplemental Figure 1. The frequency of nivolumab-bound T cells was maintained in patients who continued treatment. Nivolumab binding in CD8 and CD4 T cells was analyzed at two follow-up points, as indicated, in fresh peripheral blood from three representative cases from protocol 1 that continued treatment. 2 Osa et al Supplemental Figure 2. Long-term follow-up of nivolumab binding to T cells from fresh whole blood. Nivolumab binding was followed up in fresh peripheral blood from an additional case, Pt.7. 3 Osa et al Supplemental Figure 3. Long-term duration of nivolumab binding is due to sustained circulation of residual nivolumab in plasma. (A) PBMCs acquired from Pt.8 and 9 at pretreatment (pre PBMCs) and after a single dose (post 1 PBMCs) were cultured in regular medium without nivolumab (top and middle). Pre PBMCs were also incubated with 10 µg/ml nivolumab in vitro before the cultures were started (bottom). Nivolumab binding status was monitored at the indicated time points.