Ecology of Cougars (Puma Concolor) in North-Central Montana

Total Page:16

File Type:pdf, Size:1020Kb

Ecology of Cougars (Puma Concolor) in North-Central Montana Ecology of Cougars (Puma concolor) in north-central Montana: Distribution, resource selection, dynamics, harvest, and conservation design Chippewa Cree Tribal Wildlife Program In cooperation with World Wildlife Fund Northern Great Plains Program Bozeman, Montana Final Report April 2012 Kyran Kunkel1, Tim Vosburgh2, and Hugh Robinson3 1World Wildlife Fund; presently University of Montana, Gallatin Gateway, MT; 2Chippewa Cree Tribal Wildlife Program; presently Bureau of Land Management, Lander, WY; 3University of Montana; presently Panthera, New York, NY Space for Cougar photo Photo credit: Kyran Kunkel 1 Ecology of Cougars (Puma concolor) in north-central Montana: Distribution, resource selection, dynamics, harvest, and conservation design Kyran Kunkel, Tim Vosburgh, and Hugh Robinson Chippewa Cree Tribal Wildlife Program in cooperation with World Wildlife Fund, Final Report April 2012 Citation: Kunkel, K, T. Vosburgh, and H. Robinson. 2012. Ecology of cougars (Puma concolor) in north-central Montana. Final Report to the US Fish and Wildlife Service. World Wildlife Fund Northern Great Plains Program 202 S. Black, Ste 3 Bozeman, MT 59715 P.O. Box 7276 Bozeman, Montana 59771 (406) 582-0236 To learn more, visit www.worldwildlife.org/ngp/ ©2010 WWF. All rights reserved by the World Wildlife Fund, Inc. 2 1. Introduction opportunity. Information about cougar recolonization and ecol- Increasing attention is being directed to ecological ogy of established populations will greatly enhance restoration in North American grasslands (Forrest et understanding and management of cougars in the al. 2004), particularly with respect to species that grasslands and prairie breaks of north-central Mon- have been lost or eliminated from these systems. tana. This is especially important because cougars Some species, notably wolf (Canis lupus), bear (Ursus have been little studied in this type of landscape (Wil- spp.), and cougar are expanding in Montana through liams 1992) and very little work has been conducted reintroductions and natural recolonization. While anywhere on a recolonizing cougar population. Mon- the value of large carnivores to ecosystem function is tana FWP (1996) has adopted a cougar management increasingly understood (Terborgh et al. 1999; Pyare program (including harvest) that uses regional man- and Berger 2003; Smith et al. 2003; Soule et al. 2003, agement based on habitat capabilities of respective Ripple and Beschta 2006, Dalerum et al. 2008, Licht regions, and the CMR is developing harvest manage- et al. 2010, Estes et al. 2011, Ritchie et al. 2012), large ment guidelines as part of its ongoing planning pro- carnivores present major challenges and opportuni- cesses. But because very little is known about capa- ties for communities, ranchers, and wildlife managers bilities of landscapes in this region to support cougars, because they may also kill livestock or reduce ungu- or how to design and manage populations in source- late populations in landscapes where they have been sink landscapes to ensure persistence of cougars and absent in recent history (Atwood et al. 2007, Atwood other large carnivores (Woodruff and Ginsberg 2000, et al. 2010, Griffin et al. 2011). Because large carni- Carroll et al. 2002, Ruth et al. 2011), additional infor- vores operate at multiple and large scales (Kunkel et mation on cougar ecology, threats, and habitat use is al. 2012), management, conservation, and restoration needed. of top carnivores have played a significant role in fos- tering ecosystem approaches to wildlife management First, data are needed to understand if and how the (Minta et al. 1999). cougar population in north-central Montana is ex- panding, if it will be viable over the long term in this Cougars have recolonized much of central and eastern region, and what management is required to ensure Montana. Much of the landscape in north-central it remains viable. To provide appropriate manage- Montana appears suitable for recolonization (Riley ment, we need to determine if and how this popula- and Malecki 2001). Prey populations are robust and tion is connected to other cougar populations (Beier there are large contiguous areas of undeveloped 1996; Sweanor et al. 2000; Laundre and Clark 2003), land. The area contains the largest block of protected to other source populations, where the sources and and public lands in the Great Plains (e.g. Charles M. sinks are (Doak 1995, Sweanor et al. 2000, Robinson Russell National Wildlife Refuge (CMR) and adjacent et al. 2008, Ruth et al. 2011) and how we ensure it Upper Missouri Breaks National Monument (UMB- remains a functional part of the larger statewide cou- NM), as well as several million acres of Bureau of Land gar meta-population (Haight et al. 1998). Addressing Management lands and a diverse mix of potentially these questions will also provide information about suitable habitats. It is important to understand and connectivity in the region for other species and can document how cougars are using the landscape as add significant information about management needs they recolonize it, because that will provide much to ensure this connectivity potential remains intact insight into conservation strategies for this species, (Boyd and Pletscher 1999; Craighead et al. 1999). their prey and what might occur as other carnivores expand into the region (Mladenoff et al. 1999). Pres- Second, as wildlife managers move to more sophisti- ently there is no regional, multi-jurisdictional conser- cated models of cougar harvest as opposed to general vation plan for cougars in eastern Montana. General seasons (unlimited harvest of either sex), they will objectives for cougar management by Montana Fish, need to have information on which to base harvest Wildlife, and Parks (FWP) are to manage populations levels. Limited entry (harvest is limited by restricting at a level that promotes social and political tolerance, the number of licenses sold), quota system (harvest is minimizes human/cougar conflicts while ensuring limited by season closure once a prescribed number viable cougar populations, and sustained recreational of animals are taken) and “zone management” (Lo- 3 gan and Sweanor 2001) or “meta-population” model 2. Project Goals & Objectives (Laundre and Clark 2003) strategies are thought to re- duce the risk of overharvest by ensuring a sustainable Overall Goal loss of the total population (limited entry), reduction of female mortality (quota system), or preservation of Understand cougar population dynamics, habitat use, source populations that sustain hunted areas (meta- and distribution to assess needs for large carnivore population model). conservation in a prairie landscape in a multi-jurisdic- tional setting. Developing information on cougar resource selec- tion will provide a better understanding of popula- Objectives tion potential in grassland and breaks systems. At 1. Obtain a minimum count estimate of cougars the very least, more information on factors affecting within the project area and factors influencing this, sustainability of harvest in general based on regional including harvest, and landscape components and conditions would be useful, particularly in regions configuration; with low cougar densities and connectivity, and would be a very valuable contribution in designing regional 2. Obtain estimated rate of cougar mortality, as harvest management. well as cougar density, population distribution, and reproduction; Figure 1. Home range minimum convex polygons for GPS-collared cougars on and around Rocky Boy’s and Ft. Belknap Indian Reser- vations overlayed on cougar habitat suitability index developed by Riley and Malecki (2001). 4 3. Obtain estimates of size and composition of cou- mortality and movements (Beier 1995, Kunkel 1997, gar home ranges and habitat use; Kunkel et al. 1999, Sweanor et al. 2000, Anderson and Lindzey 2003). We either captured cougars using 4. Determine the role of the Little Rockies and Bears hounds released on tracks or by snares (Kunkel et al. Paws as a potential source population and factors in- 2007). We immobilized captured cougars and then fluencing this including connectivity between these fitted them with a radio collar. We located cougars ranges and the Missouri River Breaks and other via aerial telemetry to detect mortality and dispersing nearby habitats; or wide-ranging animals. Collars were equipped with 5. Obtain estimates of overlap and potential for con- mortality sensing devices in order to measure cougar flicts between cougars and livestock and prescrip- mortality rates and causes and factors influencing tions to reduce conflicts. mortality. We recorded hunter harvest of uncollared animals. We computed survival and cause-specific 3. Study Area mortality rates via the program MICROMORT (Heisey 1985, Heisey and Fuller 1985). We considered intra- The Rocky Boy’s and Ft. Belknap Indian Reservations specific strife to be the cause of death when blood, are located in north-central Montana (Figure 1). The subcutaneous hemorrhaging at wound sites, or signs reservations include a variety of terrain ranging from of a struggle were found at the site. We compared 1,000 – 2,300 m including the Bears Paws Moun- daily survival rates for each interval by examining tains, Little Rockies Mountains, foothills, mixed-grass overlap among confidence intervals, pooling data prairie, coniferous and mixed-coniferous/deciduous from intervals if rates were not significantly different forests, and wetlands. The project area encompasses (Heisey and Fuller 1985). We
Recommended publications
  • Dental and Temporomandibular Joint Pathology of the Kit Fox (Vulpes Macrotis)
    Author's Personal Copy J. Comp. Path. 2019, Vol. 167, 60e72 Available online at www.sciencedirect.com ScienceDirect www.elsevier.com/locate/jcpa DISEASE IN WILDLIFE OR EXOTIC SPECIES Dental and Temporomandibular Joint Pathology of the Kit Fox (Vulpes macrotis) N. Yanagisawa*, R. E. Wilson*, P. H. Kass† and F. J. M. Verstraete* *Department of Surgical and Radiological Sciences and † Department of Population Health and Reproduction, School of Veterinary Medicine, University of California, Davis, California, USA Summary Skull specimens from 836 kit foxes (Vulpes macrotis) were examined macroscopically according to predefined criteria; 559 specimens were included in this study. The study group consisted of 248 (44.4%) females, 267 (47.8%) males and 44 (7.9%) specimens of unknown sex; 128 (22.9%) skulls were from young adults and 431 (77.1%) were from adults. Of the 23,478 possible teeth, 21,883 teeth (93.2%) were present for examina- tion, 45 (1.9%) were absent congenitally, 405 (1.7%) were acquired losses and 1,145 (4.9%) were missing ar- tefactually. No persistent deciduous teeth were observed. Eight (0.04%) supernumerary teeth were found in seven (1.3%) specimens and 13 (0.06%) teeth from 12 (2.1%) specimens were malformed. Root number vari- ation was present in 20.3% (403/1,984) of the present maxillary and mandibular first premolar teeth. Eleven (2.0%) foxes had lesions consistent with enamel hypoplasia and 77 (13.8%) had fenestrations in the maxillary alveolar bone. Periodontitis and attrition/abrasion affected the majority of foxes (71.6% and 90.5%, respec- tively).
    [Show full text]
  • Brown Bear (Ursus Arctos) John Schoen and Scott Gende Images by John Schoen
    Brown Bear (Ursus arctos) John Schoen and Scott Gende images by John Schoen Two hundred years ago, brown (also known as grizzly) bears were abundant and widely distributed across western North America from the Mississippi River to the Pacific and from northern Mexico to the Arctic (Trevino and Jonkel 1986). Following settlement of the west, brown bear populations south of Canada declined significantly and now occupy only a fraction of their original range, where the brown bear has been listed as threatened since 1975 (Servheen 1989, 1990). Today, Alaska remains the last stronghold in North America for this adaptable, large omnivore (Miller and Schoen 1999) (Fig 1). Brown bears are indigenous to Southeastern Alaska (Southeast), and on the northern islands they occur in some of the highest-density FIG 1. Brown bears occur throughout much of southern populations on earth (Schoen and Beier 1990, Miller et coastal Alaska where they are closely associated with salmon spawning streams. Although brown bears and grizzly bears al. 1997). are the same species, northern and interior populations are The brown bear in Southeast is highly valued by commonly called grizzlies while southern coastal populations big game hunters, bear viewers, and general wildlife are referred to as brown bears. Because of the availability of abundant, high-quality food (e.g. salmon), brown bears enthusiasts. Hiking up a fish stream on the northern are generally much larger, occur at high densities, and have islands of Admiralty, Baranof, or Chichagof during late smaller home ranges than grizzly bears. summer reveals a network of deeply rutted bear trails winding through tunnels of devil’s club (Oplopanx (Klein 1965, MacDonald and Cook 1999) (Fig 2).
    [Show full text]
  • History and Status of the American Black Bear in Mississippi
    History and status of the American black bear in Mississippi Stephanie L. Simek1,5, Jerrold L. Belant1, Brad W. Young2, Catherine Shropshire3, and Bruce D. Leopold4 1Carnivore Ecology Laboratory, Forest and Wildlife Research Center, Mississippi State University, Box 9690, Mississippi State, MS 39762, USA 2Mississippi Department of Wildlife, Fisheries, and Parks, 1505 Eastover Drive, Jackson, MS 39211, USA 3Mississippi Wildlife Federation, 517 Cobblestone Court, Suite 2, Madison, MS 39110, USA 4Department of Wildlife, Fisheries, and Aquaculture, Mississippi State University, Box 9690, Mississippi State, MS 39762, USA Abstract: Historically abundant throughout Mississippi, American black bears (Ursus americanus) have declined due to habitat loss and overharvest. By the early 1900s, the bear population was estimated at ,12 individuals, and Mississippi closed black bear hunting in 1932. However, habitat loss continued and by 1980 suitable habitat was estimated at 20% (20,234 km2) of historic levels (101,171 km2) with the decline continuing. Although black bear abundance is currently unknown, a recent increase in occurrence reports and documented reproduction suggests the population may be increasing. There have been 21 reported nuisance complaints since 2006, of which 7 were apiary damage. Additionally, 31 bear mortalities were reported since 1972; 80% were human caused. Government and private organizations have emphasized education on bear ecology and human–bear coexistence, while habitat restoration through land retirement programs (e.g.,
    [Show full text]
  • Ecology of the European Badger (Meles Meles) in the Western Carpathian Mountains: a Review
    Wildl. Biol. Pract., 2016 Aug 12(3): 36-50 doi:10.2461/wbp.2016.eb.4 REVIEW Ecology of the European Badger (Meles meles) in the Western Carpathian Mountains: A Review R.W. Mysłajek1,*, S. Nowak2, A. Rożen3, K. Kurek2, M. Figura2 & B. Jędrzejewska4 1 Institute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Pawińskiego 5a, 02-106 Warszawa, Poland. 2 Association for Nature “Wolf”, Twardorzeczka 229, 34-324 Lipowa, Poland. 3 Institute of Environmental Sciences, Jagiellonian University, Gronostajowa 7, 30-387 Kraków, Poland. 4 Mammal Research Institute, Polish Academy of Sciences, Waszkiewicza 1c, 17-230 Białowieża, Poland. * Corresponding author email: [email protected]. Keywords Abstract Altitudinal Gradient; This article summarizes the results of studies on the ecology of the European Diet Composition; badger (Meles meles) conducted in the Western Carpathians (S Poland) Meles meles; from 2002 to 2010. Badgers inhabiting the Carpathians use excavated setts Mustelidae; (53%), caves and rock crevices (43%), and burrows under human-made Sett Utilization; constructions (4%) as permanent shelters. Excavated setts are located up Spatial Organization. to 640 m a.s.l., but shelters in caves and crevices can be found as high as 1,050 m a.s.l. Badger setts are mostly located on slopes with southern, eastern or western exposure. Within their territories, ranging from 3.35 to 8.45 km2 (MCP100%), badgers may possess 1-12 setts. Family groups are small (mean = 2.3 badgers), population density is low (2.2 badgers/10 km2), as is reproduction (0.57 young/year/10 km2). Hunting by humans is the main mortality factor (0.37 badger/year/10 km2).
    [Show full text]
  • Periodic Status Review for the Steller Sea Lion
    STATE OF WASHINGTON January 2015 Periodic Status Review for the Steller Sea Lion Gary J. Wiles The Washington Department of Fish and Wildlife maintains a list of endangered, threatened, and sensitive species (Washington Administrative Codes 232-12-014 and 232-12-011, Appendix E). In 1990, the Washington Wildlife Commission adopted listing procedures developed by a group of citizens, interest groups, and state and federal agencies (Washington Administrative Code 232-12-297, Appendix A). The procedures include how species listings will be initiated, criteria for listing and delisting, a requirement for public review, the development of recovery or management plans, and the periodic review of listed species. The Washington Department of Fish and Wildlife is directed to conduct reviews of each endangered, threatened, or sensitive wildlife species at least every five years after the date of its listing. The reviews are designed to include an update of the species status report to determine whether the status of the species warrants its current listing status or deserves reclassification. The agency notifies the general public and specific parties who have expressed their interest to the Department of the periodic status review at least one year prior to the five-year period so that they may submit new scientific data to be included in the review. The agency notifies the public of its recommendation at least 30 days prior to presenting the findings to the Fish and Wildlife Commission. In addition, if the agency determines that new information suggests that the classification of a species should be changed from its present state, the agency prepares documents to determine the environmental consequences of adopting the recommendations pursuant to requirements of the State Environmental Policy Act.
    [Show full text]
  • SPECIES REPORT Sierra Nevada Red Fox (Vulpes Vulpes Necator)
    SPECIES REPORT Sierra Nevada Red Fox (Vulpes vulpes necator) U.S. FISH AND WILDLIFE SERVICE August 14, 2015 Table of Contents INTRODUCTION .......................................................................................................................... 4 ACRONYMS AND SUBSTITUTIONS USED ............................................................................. 4 SPECIES AND SUBSPECIES DESCRIPTION ............................................................................ 5 TAXONOMY AND GENETICS ................................................................................................... 6 Taxonomic History and Relationship to Other Fox Subspecies ........................................... 6 Genetics ...................................................................................................................................... 7 RANGE AND DISTRIBUTION .................................................................................................... 8 Historical Range ........................................................................................................................ 8 Map 1: SNRF Historical Range in California .................................................................... 9 Current Distribution ............................................................................................................... 10 Map 2: SNRF Sighting Areas............................................................................................. 12 Table 1: SNRF Sighting Areas ..........................................................................................
    [Show full text]
  • 1 POLAR BEAR (Ursus Maritimus): Chukchi/Bering Seas Stock STOCK
    Revised: 01/01/2010 POLAR BEAR (Ursus maritimus): Chukchi/Bering Seas Stock STOCK DEFINITION AND GEOGRAPHIC RANGE Polar bears are circumpolar in their distribution in the northern hemisphere. They occur in several largely discrete stocks or populations (Harington 1968). Polar bear movements are extensive and individual activity areas are enormous (Garner et al. 1990, Amstrup et al. 2000). The parameters used by Dizon et al. (1992) to classify stocks based on the phylogeographic approach were considered in the determination of stock separation in Alaska. Several polar bear stocks are known to be shared between countries (Amstrup et al. 1986, Amstrup and DeMaster 1988). Lentfer hypothesized that in Alaska two stocks exist, the Southern Beaufort Sea (SBS) and the Chukchi/Bering seas (CBS), based upon: (a) variations in levels of heavy metal contaminants of organ tissues (Lentfer 1976, Figure 1. Map of the Southern Beaufort Sea and the Chukchi/ Lentfer and Galster 1987); (b) morphological Bering seas polar bear stocks. characteristics (Manning 1971, Lentfer 1974, Wilson 1976); (c) physical oceanographic features which segregate the Chukchi Sea and Bering Sea stock from the Beaufort Sea stock (Lentfer 1974); and (d) movement information collected from mark and recapture studies of adult female bears (Lentfer 1974, 1983) (Figure 1). Information on contaminants (Woshner et al. 2001, Evans 2004a, Evans 2004b, Kannan et al. 2005, Smithwick et al. 2005, Verreault et al. 2005, Muir et al. 2006, Smithwick et al. 2006, Kannan et al. 2007, Rush et al. 2008) and movement data using satellite collars (Amstrup et al. 2004, Amstrup et al. 2005) continue to support the presence of these two stocks.
    [Show full text]
  • Notes on the Biology of the Tibetan Fox (Vulpes Ferrilata)
    Harris et al. Biology of Tibetan fox Canid News Copyright © 2008 by the IUCN/SSC Canid Specialist Group. ISSN 1478-2677 The following is the established format for referencing this article: Harris et al. 2008. Notes on the biology of the Tibetan fox. Canid News 11.1 [online] URL: http://www.canids.org/canidnews/11/ Biology_of_Tibetan_fox.pdf. Research Report Notes on the biology of the Tibetan fox Richard B. Harris1*, Wang Zhenghuan2, Zhou Jiake1, and Liu Qunxiu2 1 Department of Ecosystem and Conservation Sciences, College of Forestry and Conservation, Univer- sity of Montana, Missoula, Montana, USA. 2 School of Life Science, East China Normal University, Shanghai, People’s Republic of China. * Correspondence author. Email: [email protected] Keywords: body size; brown bear; China; mating; Ursus arctos; Vulpes ferrilata; whelping Abstract Introduction We report on three aspects of the biology of Until recently, biological data on the Tibetan Tibetan foxes Vulpes ferrilata for which existing fox was gained mostly from anecdotal reports, literature is either absent or misleading. Our observations of their sign, or hunting records two field studies in western China each in- (e.g. Gong and Hu 2003; Schaller and Gisnberg volved capture (and subsequent radio- 2004; Wang et al. 2003, 2004, 2007). Because marking) of foxes, allowing us to refine exist- Tibetan foxes live in remote, mountainous en- ing information on body size and mass. Ti- vironments and are rarely observed in the betan foxes we captured were somewhat lar- wild, some aspects of their biology have been ger and heavier than the current literature difficult to document.
    [Show full text]
  • Tribal Wildlife Grant Final Report Makah Cougar and Bobcat Research Grant: F12AP00260
    Tribal Wildlife Grant Final Report Makah Cougar and Bobcat Research Grant: F12AP00260 Prepared by: Shannon Murphie and Rob McCoy 1 INTRODUCTION Mountain lions or cougars (Puma concolor) and bobcats (Lynx rufus) are both native mammals of the family Felidae. Mountain lions are large solitary cats with the greatest range of any large wild terrestrial mammal in the Western Hemisphere (Iriarte et al. 1990). Bobcats are also solitary cats that range from southern Canada to northern Mexico, including most of the continental United States. Both species are predators and as such play a prominent role in Native American mythology and culture due to their perceived attributes such as grace, strength, eyesight, and hunting ability. Similar to other Native American Tribes, predators have played a key role in the culture and ceremonies of the Makah people. Gray wolves (Canis lupus), black bear (Ursus americanus), cougars, and bobcats all are important components of Makah culture both historically and in contemporary times. For example, black bears and gray wolves both represented important clans in Makah history. Gray wolves exhibited cooperative behavior that provided guidelines for human behavior and “Klukwalle,” or wolf ritual, was a secret society that required a 6 day initiation period (G. Arnold, personal communication). Wolf hides were also used in dance and costume regalia. Bear hides were worn by men of status (Chapman 1994) and as regalia during whale hunts (G. Ray, personal communication). Cougars and bobcats play a smaller, but still important role in Makah history and contemporary culture. During naming ceremonies a Makah name is given which best reflects an individual, often an animal such as the mountain lion is used as it represents intelligence and power.
    [Show full text]
  • American Black Bear (Ursus Americanus) Taxonomy: Family
    American Black Bear (Ursus americanus) Taxonomy: Family Ursidae. here are currently 18 recognized subspecies, including Ursus americanus cinnamomum which occurs in northern Utah. Description: The American black bear is the smallest of the North American bears. It’s coloration varies widely with locality: the most common being black with a brown muzzle, but light brown and cinnamon are common and specific subspecies are known to be a pale bluish gray or even cream colored. They can be distinguished from Usus arctos by their longer, tapered, less furry ears, a convex, rather than concave, face profile, and the lack of a large shoulder hump. Length of head and body: 1,400-2,000 mm (males) 1,200-1,600 mm (females); Length of tail: 80- 140 mm; Weight: 47-409 kg (males) 39-236 kg (females) Distribution: Ranges south from Alaska, transcontinental across Canada and continuing south through the Rocky Mountains into Northern Mexico. They are also found in the Pacific Northwest down into California, as well as populations in the Appalachians, Louisiana, and Florida. Locally common in the mountains of the Wasatch Front. Ecology and Diet: Black bears are omnivorous: their diet consists of some small mammals and insects but is comprised mostly of fruits, nuts and vegetation. If food is abundant and in a central location bears will congregate and social hierarchies form, but usually food is spread out and sparse so black bears tend to be solitary. They are active during the daytime but some have developed nocturnal habits in areas with a large human presence. Hibernation begins in the late fall but in the more southern, warmer parts of their range only pregnant females hibernate.
    [Show full text]
  • Phylogeography of the North American Red Fox: Vicariance in Pleistocene Forest Refugia
    AUBRY, K. B., STATHAM, M. J., SACKS, B. N., PERRINE, J. D. and WISELY, S. M. (2009), Phylogeography of the North American red fox: vicariance in Pleistocene forest refugia. Molecular Ecology, 18: 2668–2686. doi: 10.1111/j.1365-294X.2009.04222.x Phylogeography of the North American red fox: vicariance in Pleistocene forest refugia KEITH B. AUBRY, MARK J. STATHAM, BENJAMIN N. SACKS, JOHN D. PERRINE and SAMANTHA M. WISELY Abstract Fossil, archaeological, and morphometric data suggest that indigenous red foxes in North America were derived from vicariance in two disjunct refugia during the last glaciation: one in Beringia and one in the contiguous USA. To test this hypothesis, we conducted a phylogeographical analysis of the North American red fox within its presettlement range. We sequenced portions of the mitochondrial cytochrome b (354 bp) gene and D-loop (342 bp) from 220 historical red fox specimens. Phylogenetic analysis of the cytochrome b gene produced two clades that diverged c. 400 000 years before present (BP): a Holarctic and a Nearctic clade. D- loop analyses of the Nearctic clade indicated three distinct subclades (≥ 99% Bayesian posterior probability); two that were more recently derived (rho estimate c. 20 000 BP) and were restricted to the southwestern mountains and the eastern portion of North America, and one that was older (rho estimate c. 45 000 BP) and more widespread in North America. Populations that migrated north from the southern refugium following deglaciation were derived from the colonization of North America during or prior to the Illinoian glaciation (300 000–130 000 BP), whereas populations that migrated south from the northern refugium represent a more recent colonization event during the Wisconsin glaciation (100 000–10 000 BP).
    [Show full text]
  • Telling Apart Felidae and Ursidae from the Distribution of Nucleotides in Mitochondrial DNA
    Telling apart Felidae and Ursidae from the distribution of nucleotides in mitochondrial DNA Andrij Rovenchak Department for Theoretical Physics, Ivan Franko National University of Lviv, 12 Drahomanov St., Lviv, UA-79005, Ukraine [email protected] February 9, 2018 Abstract Rank{frequency distributions of nucleotide sequences in mitochon- drial DNA are defined in a way analogous to the linguistic approach, with the highest-frequent nucleobase serving as a whitespace. For such sequences, entropy and mean length are calculated. These pa- rameters are shown to discriminate the species of the Felidae (cats) and Ursidae (bears) families. From purely numerical values we are able to see in particular that giant pandas are bears while koalas are not. The observed linear relation between the parameters is explained using a simple probabilistic model. The approach based on the non- additive generalization of the Bose-distribution is used to analyze the arXiv:1802.02610v1 [q-bio.OT] 7 Feb 2018 frequency spectra of the nucleotide sequences. In this case, the sepa- ration of families is not very sharp. Nevertheless, the distributions for Felidae have on average longer tails comparing to Ursidae Key words: Complex systems; rank{frequency distributions; mito- chondrial DNA. PACS numbers: 89.20.-a; 87.18.-h; 87.14.G-; 87.16.Tb 1 1 Introduction Approaches of statistical physics proved to be efficient tools for studies of systems of different nature containing many interacting agents. Applications cover a vast variety of subjects, from voting models,1, 2 language dynamics,3, 4 and wealth distribution5 to dynamics of infection spreading6 and cellular growth.7 Studies of deoxyribonucleic acid (DNA) and genomes are of particular in- terest as they can bridge several scientific domains, namely, biology, physics, and linguistics.8{12 Such an interdisciplinary nature of the problem might require a brief introductory information as provided below.
    [Show full text]