November 2020 Vol 26, No 11, November 2020
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® November 2020 1916. Oil on canvas, National 39.7 Museumsin x 62.5 in/101Liverpool, cm Liverpool,x 159 Art cm. Gallery, Lever UK. Lady A Tale from The Decameron, A Tale Respiratory Infections Respiratory John William (1849–1917), Waterhouse Vol 26, No 11, November 2020 DEPARTMENT OF HEALTH & HUMAN SERVICES Public Health Service Centers for Disease Control and Prevention (CDC) Mailstop D61, Atlanta, GA 30329-4027 Official Business Penalty for Private Use $300 Return Service Requested ISSN 1080-6040 Peer-Reviewed Journal Tracking and Analyzing Disease Trends Pages 2543–2796 ® EDITOR-IN-CHIEF D. Peter Drotman ASSOCIATE EDITORS EDITORIAL BOARD Charles Ben Beard, Fort Collins, Colorado, USA Barry J. Beaty, Fort Collins, Colorado, USA Ermias Belay, Atlanta, Georgia, USA Martin J. Blaser, New York, New York, USA David M. Bell, Atlanta, Georgia, USA Andrea Boggild, Toronto, Ontario, Canada Sharon Bloom, Atlanta, Georgia, USA Christopher Braden, Atlanta, Georgia, USA Richard Bradbury, Melbourne, Australia Arturo Casadevall, New York, New York, USA Mary Brandt, Atlanta, Georgia, USA Kenneth G. Castro, Atlanta, Georgia, USA Corrie Brown, Athens, Georgia, USA Vincent Deubel, Shanghai, China Charles H. Calisher, Fort Collins, Colorado, USA Christian Drosten, Charité Berlin, Germany Benjamin J. Cowling, Hong Kong, China Anthony Fiore, Atlanta, Georgia, USA Michel Drancourt, Marseille, France Isaac Chun-Hai Fung, Statesboro, Georgia, USA Paul V. Effler, Perth, Australia Kathleen Gensheimer, College Park, Maryland, USA David O. Freedman, Birmingham, Alabama, USA Rachel Gorwitz, Atlanta, Georgia, USA Peter Gerner-Smidt, Atlanta, Georgia, USA Duane J. Gubler, Singapore Stephen Hadler, Atlanta, Georgia, USA Richard L. Guerrant, Charlottesville, Virginia, USA Matthew J. Kuehnert, Edison, New Jersey, USA Scott Halstead, Arlington, Virginia, USA Nina Marano, Atlanta, Georgia, USA David L. Heymann, London, UK Martin I. Meltzer, Atlanta, Georgia, USA Keith Klugman, Seattle, Washington, USA David Morens, Bethesda, Maryland, USA S.K. Lam, Kuala Lumpur, Malaysia J. Glenn Morris, Jr., Gainesville, Florida, USA Stuart Levy, Boston, Massachusetts, USA Patrice Nordmann, Fribourg, Switzerland John S. Mackenzie, Perth, Australia Johann D.D. Pitout, Calgary, Alberta, Canada John E. McGowan, Jr., Atlanta, Georgia, USA Ann Powers, Fort Collins, Colorado, USA Didier Raoult, Marseille, France Jennifer H. McQuiston, Atlanta, Georgia, USA Pierre E. Rollin, Atlanta, Georgia, USA Tom Marrie, Halifax, Nova Scotia, Canada Frederic E. Shaw, Atlanta, Georgia, USA Nkuchia M. M’ikanatha, Harrisburg, Pennsylvania, USA David H. Walker, Galveston, Texas, USA Frederick A. Murphy, Bethesda, Maryland, USA J. Todd Weber, Atlanta, Georgia, USA Barbara E. Murray, Houston, Texas, USA J. Scott Weese, Guelph, Ontario, Canada Stephen M. Ostroff, Silver Spring, Maryland, USA William Clyde Partin, Atlanta, Georgia, USA Managing Editor Mario Raviglione, Milan, Italy and Geneva, Switzerland Byron Breedlove, Atlanta, Georgia, USA David Relman, Palo Alto, California, USA Copy Editors Deanna Altomara, Dana Dolan, Karen Foster, Guenael R. Rodier, Saône-et-Loire, France Kristine Gerdes, Thomas Gryczan, Amy Guinn, Connie Schmaljohn, Frederick, Maryland, USA Shannon O’Connor, Tony Pearson-Clarke, Jude Rutledge, Tom Schwan, Hamilton, Montana, USA P. Lynne Stockton, Deborah Wenger Rosemary Soave, New York, New York, USA Production Thomas Eheman, William Hale, Barbara Segal, P. Frederick Sparling, Chapel Hill, North Carolina, USA Reginald Tucker Robert Swanepoel, Pretoria, South Africa David E. Swayne, Athens, Georgia, USA Journal Administrator Susan Richardson Phillip Tarr, St. Louis, Missouri, USA Editorial Assistants Jane McLean Boggess, Kaylyssa Quinn Duc Vugia, Richmond, California, USA Mary Edythe Wilson, Iowa City, Iowa, USA Communications/Social Media Heidi Floyd, Sarah Logan Gregory Emerging Infectious Diseases is published monthly by the Centers for Disease Control Founding Editor and Prevention, 1600 Clifton Rd NE, Mailstop H16-2, Atlanta, GA 30329-4027, USA. Joseph E. McDade, Rome, Georgia, USA Telephone 404-639-1960; email, [email protected] The conclusions, findings, and opinions expressed by authors All material published in Emerging Infectious Diseases is in the contributing to this journal do not necessarily reflect the official public domain and may be used and reprinted without special position of the U.S. Department of Health and Human Services, permission; proper citation, however, is required. the Public Health Service, the Centers for Disease Control and Use of trade names is for identification only and does not imply Prevention, or the authors’ affiliated institutions. Use of trade names endorsement by the Public Health Service or by the U.S. Department is for identification only and does not imply endorsement by any of of Health and Human Services. the groups named above. EMERGING INFECTIOUS DISEASES is a registered service mark of the U.S. Department of Health & Human Services (HHS). Emerging Infectious Diseases • www.cdc.gov/eid • Vol. 26, No.11 November, 2020 Respiratory Infections November 2020 On the Cover John William Waterhouse (1849–1917), A Tale from The Decameron, 1916. Oil on Canvas, 39.7 in x 62.5 in/101 cm x 159 cm. Lady Lever Art Gallery, National Museums, Liverpool. Perspectives Research The Problem of Microbial Dark Matter in Neonatal Sepsis S.A. Sinnar, S.J. Schiff 2543 Phage-Mediated Immune Evasion and Transmission Two Pandemics, One Challenge–Leveraging of Livestock-Associated Methicillin-Resistant Molecular Test Capacity of Tuberculosis Staphylococcus aureus in Humans Laboratories for Rapid COVID-19 Case-Finding This bacterium is capable of adapting to humans, leading S. Homolka et al. 2549 to increased spread into the community and healthcare settings. Synopses R.N. Sieber et al. 2578 Validated Methods for Removing Select Measuring Timeliness of Outbreak Response Agent Samples from Biosafety Level 3 in the World Heath Organization African Region, Laboratories 2017–2019 A.E. Kesterson et al. 2586 B. Impouma et al. 2555 Epidemiology of COVID-19 Outbreak on Challenges to Achieving Measles Elimination, Cruise Ship Quarantined at Yokohama, Japan, Georgia, 2013–2018 February 2020 N. Khetsuriani et al. 2565 Expert Taskforce for the COVID-19 Cruise Ship Outbreak 2591 Emerging Infectious Diseases • www.cdc.gov/eid • Vol. 26, No. 11, November 2020 Analysis of SARS-CoV-2 Transmission in Different Settings, Brunei L. Chaw et al. 2598 Case–Control Study of Use of Personal November 2020 Protective Measures and Risk for SARS-CoV-2 Infection, Thailand Dispatches P. Doung-ngern et al. 2607 Multidrug-Resistant Candida auris Infections Transmission of SARS-CoV-2 During in Critically Ill Coronavirus Disease Patients, Long-Haul Flight India, April–July 2020 N.C. Khanh et al. 2617 A. Chowdhary et al. 2695 Endotheliopathy and Platelet Dysfunction as Hallmarks of Fatal Lassa Fever Potential Role of Social Distancing in Mitigating Spread of Coronavirus Disease, South Korea L.E. Horton et al. 2625 S.W. Park et al. 2698 High Dengue Burden and Circulation of 4 Virus Serotypes among Children with Undifferentiated SARS-CoV-2 Virus Culture and Subgenomic RNA for Fever, Kenya, 2014–2017 Respiratory Specimens from Patients with M.M. Shah et al. 2638 Mild Coronavirus Disease R.A.P.M. Perera et al. 2702 Systematic Review and Meta-Analyses of Incidence for Group B Streptococcus Disease in Infants and Asymptomatic Transmission of SARS-CoV-2 on Antimicrobial Resistance, China Evacuation Flight Y. Ding et al. 2651 S.H. Bae et al. 2706 Streptococcus pneumoniae Serotype 12F-CC4846 and Invasive Pneumococcal Disease Worldwide Effects of Coronavirus Disease after Introduction of 13-Valent Pneumococcal Pandemic on Tuberculosis Services, January– Conjugate Vaccine, Japan, 2015–2017 April 2020 S. Nakano et al. 2661 G.B. Migliori et al. 2710 Nowcasting (Short-Term Forecasting) of Influenza In-Flight Transmission of SARS-CoV-2 Epidemics in Local Settings, Sweden, 2008–2019 E.M. Choi et al. 2714 A. Spreco et al. 2670 Preventing Vectorborne Transmission of Zika Azithromycin to Prevent Pertussis in Household Virus Infection During Pregnancy, Puerto Rico, Contacts, Catalonia and Navarre, Spain, 2012–2013 USA, 2016–2017 J. Alvarez et al. 2679 K. Kortsmit et al. 2718 Modeling Treatment Strategies to Inform Multidrug-Resistant Hypervirulent Group B Yaws Eradication Streptococcus in Neonatal Invasive Infections, A. Holmes et al. 2686 France, 2007–2019 C. Plainvert et al. 2722 2612 Epileptic Seizure after Use of Moxifloxacin in Man with Legionella longbeachae Pneumonia J. Wang et al. 2726 Two New Cases of Pulmonary Infection by Mycobacterium shigaense S. Yoshida et al. 2729 Thresholds versus Anomaly Detection for Surveillance of Pneumonia and Influenza Mortality T.L. Wiemken et al. 2734 Multiple Introductions of Salmonella enterica Serovar Typhi H58 with Reduced Fluoroquinolone Susceptibility into Chile M. Maes et al. 2737 Emerging Infectious Diseases • www.cdc.gov/eid • Vol. 26, No. 11, November 2020 2777 November 2020 COVID-19 Outbreak, Senegal, 2020 N. Dia et al. 2772 Burkholderia pseudomallei in Soil, US Virgin Islands, 2019 N.E. Stone et al. 2774 Nontuberculous Mycobacterial Pulmonary Disease from Mycobacterium hassiacum, Austria H.J.F. Salzer et al. 2777 Chikungunya Virus Infection in Blood Donors Large Outbreak of Guillain-Barré Syndrome, and Patients During Outbreak, Mandalay, Peru, 2019 Myanmar, 2019 C.V. Munayco et al. 2779 A.K. Kyaw et al. 2742 Osteomyelitis Due to Mycobacterium goodii KPC-3–Producing