The Biochemistry of Gout: a USMLE Step 1 Study Aid
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35 Disorders of Purine and Pyrimidine Metabolism
35 Disorders of Purine and Pyrimidine Metabolism Georges van den Berghe, M.- Françoise Vincent, Sandrine Marie 35.1 Inborn Errors of Purine Metabolism – 435 35.1.1 Phosphoribosyl Pyrophosphate Synthetase Superactivity – 435 35.1.2 Adenylosuccinase Deficiency – 436 35.1.3 AICA-Ribosiduria – 437 35.1.4 Muscle AMP Deaminase Deficiency – 437 35.1.5 Adenosine Deaminase Deficiency – 438 35.1.6 Adenosine Deaminase Superactivity – 439 35.1.7 Purine Nucleoside Phosphorylase Deficiency – 440 35.1.8 Xanthine Oxidase Deficiency – 440 35.1.9 Hypoxanthine-Guanine Phosphoribosyltransferase Deficiency – 441 35.1.10 Adenine Phosphoribosyltransferase Deficiency – 442 35.1.11 Deoxyguanosine Kinase Deficiency – 442 35.2 Inborn Errors of Pyrimidine Metabolism – 445 35.2.1 UMP Synthase Deficiency (Hereditary Orotic Aciduria) – 445 35.2.2 Dihydropyrimidine Dehydrogenase Deficiency – 445 35.2.3 Dihydropyrimidinase Deficiency – 446 35.2.4 Ureidopropionase Deficiency – 446 35.2.5 Pyrimidine 5’-Nucleotidase Deficiency – 446 35.2.6 Cytosolic 5’-Nucleotidase Superactivity – 447 35.2.7 Thymidine Phosphorylase Deficiency – 447 35.2.8 Thymidine Kinase Deficiency – 447 References – 447 434 Chapter 35 · Disorders of Purine and Pyrimidine Metabolism Purine Metabolism Purine nucleotides are essential cellular constituents 4 The catabolic pathway starts from GMP, IMP and which intervene in energy transfer, metabolic regula- AMP, and produces uric acid, a poorly soluble tion, and synthesis of DNA and RNA. Purine metabo- compound, which tends to crystallize once its lism can be divided into three pathways: plasma concentration surpasses 6.5–7 mg/dl (0.38– 4 The biosynthetic pathway, often termed de novo, 0.47 mmol/l). starts with the formation of phosphoribosyl pyro- 4 The salvage pathway utilizes the purine bases, gua- phosphate (PRPP) and leads to the synthesis of nine, hypoxanthine and adenine, which are pro- inosine monophosphate (IMP). -
Cancer Drug Pharmacology Table
CANCER DRUG PHARMACOLOGY TABLE Cytotoxic Chemotherapy Drugs are classified according to the BC Cancer Drug Manual Monographs, unless otherwise specified (see asterisks). Subclassifications are in brackets where applicable. Alkylating Agents have reactive groups (usually alkyl) that attach to Antimetabolites are structural analogues of naturally occurring molecules DNA or RNA, leading to interruption in synthesis of DNA, RNA, or required for DNA and RNA synthesis. When substituted for the natural body proteins. substances, they disrupt DNA and RNA synthesis. bendamustine (nitrogen mustard) azacitidine (pyrimidine analogue) busulfan (alkyl sulfonate) capecitabine (pyrimidine analogue) carboplatin (platinum) cladribine (adenosine analogue) carmustine (nitrosurea) cytarabine (pyrimidine analogue) chlorambucil (nitrogen mustard) fludarabine (purine analogue) cisplatin (platinum) fluorouracil (pyrimidine analogue) cyclophosphamide (nitrogen mustard) gemcitabine (pyrimidine analogue) dacarbazine (triazine) mercaptopurine (purine analogue) estramustine (nitrogen mustard with 17-beta-estradiol) methotrexate (folate analogue) hydroxyurea pralatrexate (folate analogue) ifosfamide (nitrogen mustard) pemetrexed (folate analogue) lomustine (nitrosurea) pentostatin (purine analogue) mechlorethamine (nitrogen mustard) raltitrexed (folate analogue) melphalan (nitrogen mustard) thioguanine (purine analogue) oxaliplatin (platinum) trifluridine-tipiracil (pyrimidine analogue/thymidine phosphorylase procarbazine (triazine) inhibitor) -
Analysis of Tautomeric Equilibrium of the Analogue D(Dinitro-Tc(O))TP During Incorporation by the Klenow Fragment of DNA Polymerase I
Analysis of Tautomeric Equilibrium of the Analogue d(dinitro-tC(O))TP During Incorporation by the Klenow Fragment of DNA Polymerase I Arielle Baker Monday, April 7th, 2014: 4:00pm Thesis Advisor Robert Kuchta, Ph.D. | Dept. of Chemistry and Biochemistry Committee Members Robert Knight, Ph.D. | Dept. of Chemistry and Biochemistry Jennifer Martin, Ph.D. | Dept. of Molecular, Cellular and Developmental Biology This thesis is submitted in partial fulfillment of the requirements for graduation with honors in the Department of Molecular, Cellular and Developmental Biology at the University of Colorado, Boulder. Acknowledgements My most heartfelt thanks goes to my advisor, mentor and friend Dr. Rob Kuchta, for his unending patience and willingness to share his knowledge with me, as well as his continued support for my pursuit of science. I would like to thank my friends in the Kuchta lab, and to some colleagues in particular. Thank you to Dr. Andrew Olsen and Dr. Gudrun Stengel for being the very first overseers of my work, and for not scaring me off. Thanks to Dr. Ashwani Vashishtha, Dr. Joshua Gosling, Sarah Dickerson, Clarinda Hougen and Taylor Minckley for the many laughs we’ve shared benchside, and for answering even the most insignificant of questions. Thank you to my committee members, Dr. Jennifer Martin and Dr. Rob Knight, for their assistance in navigating my thesis work. My work would not have been possible without generous funding from the National Institutes of Health. Thank you to my dear friend Makenna Morck for always being available to discuss biochemistry with me in the wee hours of the morning. -
Purine Analogue 6-Methylmercaptopurine Riboside Inhibits Early and Late Phases of the Angiogenesis Process1
[CANCER RESEARCH 59, 2417–2424, May 15, 1999] Purine Analogue 6-Methylmercaptopurine Riboside Inhibits Early and Late Phases of the Angiogenesis Process1 Marco Presta,2 Marco Rusnati, Mirella Belleri, Lucia Morbidelli, Marina Ziche, and Domenico Ribatti Unit of General Pathology and Immunology, Department of Biomedical Sciences and Biotechnology, School of Medicine, University of Brescia, 25123 Brescia [M. P., M. R., M. B.]; Centro Interuniversitario di Medicina Molecolare e Biofisica Applicata (C.I.M.M.B.A.), Department of Pharmacology, University of Florence, 50134 Florence [L. M., M. Z.]; and Institute of Human Anatomy, Histology, and General Embryology, University of Bari, 70124 Bari [D. R.], Italy ABSTRACT purine synthesis and purine interconversion reactions, and their me- tabolites can be incorporated into nucleic acids (3). 6-TG3 and Angiogenesis has been identified as an important target for antineo- 6-MMPR also alter membrane glycoprotein synthesis (4). Purine plastic therapy. The use of purine analogue antimetabolites in combina- analogues can act as protein kinase inhibitors; 6-MMPR is a highly tion chemotherapy of solid tumors has been proposed. To assess the possibility that selected purine analogues may affect tumor neovascular- effective inhibitor of nerve growth factor-activated protein kinase N ization, 6-methylmercaptopurine riboside (6-MMPR), 6-methylmercapto- (5), and 2-AP inhibits proto-oncogene and IFN gene transcription (6). purine, 2-aminopurine, and adenosine were evaluated for the capacity to Moreover, purine analogues have found application in immunosup- inhibit angiogenesis in vitro and in vivo. 6-MMPR inhibited fibroblast pressive and antiviral therapy (3). At present, 6-MMP and 6-TG growth factor-2 (FGF2)-induced proliferation and delayed the repair of continue to be used mainly in the management of acute leukemia. -
The Link Between Purine Metabolism and Production of Antibiotics in Streptomyces
antibiotics Review The Link between Purine Metabolism and Production of Antibiotics in Streptomyces Smitha Sivapragasam and Anne Grove * Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA; [email protected] * Correspondence: [email protected] Received: 10 May 2019; Accepted: 3 June 2019; Published: 6 June 2019 Abstract: Stress and starvation causes bacterial cells to activate the stringent response. This results in down-regulation of energy-requiring processes related to growth, as well as an upregulation of genes associated with survival and stress responses. Guanosine tetra- and pentaphosphates (collectively referred to as (p)ppGpp) are critical for this process. In Gram-positive bacteria, a main function of (p)ppGpp is to limit cellular levels of GTP, one consequence of which is reduced transcription of genes that require GTP as the initiating nucleotide, such as rRNA genes. In Streptomycetes, the stringent response is also linked to complex morphological differentiation and to production of secondary metabolites, including antibiotics. These processes are also influenced by the second messenger c-di-GMP. Since GTP is a substrate for both (p)ppGpp and c-di-GMP, a finely tuned regulation of cellular GTP levels is required to ensure adequate synthesis of these guanosine derivatives. Here, we discuss mechanisms that operate to control guanosine metabolism and how they impinge on the production of antibiotics in Streptomyces species. Keywords: c-di-GMP; guanosine and (p)ppGpp; purine salvage; secondary metabolism; Streptomycetes; stringent response 1. Introduction Bacteria experience constant challenges, either in the environment or when infecting a host. They utilize various mechanisms to survive such stresses, which may include changes in temperature, pH, or oxygen content as well as limited access to carbon or nitrogen sources. -
Effects of Allopurinol and Oxipurinol on Purine Synthesis in Cultured Human Cells
Effects of allopurinol and oxipurinol on purine synthesis in cultured human cells William N. Kelley, James B. Wyngaarden J Clin Invest. 1970;49(3):602-609. https://doi.org/10.1172/JCI106271. Research Article In the present study we have examined the effects of allopurinol and oxipurinol on thed e novo synthesis of purines in cultured human fibroblasts. Allopurinol inhibits de novo purine synthesis in the absence of xanthine oxidase. Inhibition at lower concentrations of the drug requires the presence of hypoxanthine-guanine phosphoribosyltransferase as it does in vivo. Although this suggests that the inhibitory effect of allopurinol at least at the lower concentrations tested is a consequence of its conversion to the ribonucleotide form in human cells, the nucleotide derivative could not be demonstrated. Several possible indirect consequences of such a conversion were also sought. There was no evidence that allopurinol was further utilized in the synthesis of nucleic acids in these cultured human cells and no effect of either allopurinol or oxipurinol on the long-term survival of human cells in vitro could be demonstrated. At higher concentrations, both allopurinol and oxipurinol inhibit the early steps ofd e novo purine synthesis in the absence of either xanthine oxidase or hypoxanthine-guanine phosphoribosyltransferase. This indicates that at higher drug concentrations, inhibition is occurring by some mechanism other than those previously postulated. Find the latest version: https://jci.me/106271/pdf Effects of Allopurinol and Oxipurinol on Purine Synthesis in Cultured Human Cells WILLIAM N. KELLEY and JAMES B. WYNGAARDEN From the Division of Metabolic and Genetic Diseases, Departments of Medicine and Biochemistry, Duke University Medical Center, Durham, North Carolina 27706 A B S TR A C T In the present study we have examined the de novo synthesis of purines in many patients. -
Selective Ablation of Human Cancer Cells by Telomerase-Specific
Oncogene (2003) 22, 370–380 & 2003 Nature Publishing Group All rights reserved 0950-9232/03 $25.00 www.nature.com/onc Selective ablation of human cancer cells by telomerase-specific adenoviral suicide gene therapy vectors expressing bacterial nitroreductase Alan E Bilsland1, Claire J Anderson1, Aileen J Fletcher-Monaghan1, Fiona McGregor1, TR Jeffry Evans1, Ian Ganly1, Richard J Knox2, Jane A Plumb1 and W Nicol Keith*,1 1Cancer Research UK Department of Medical Oncology, University of Glasgow, Cancer Research UK Beatson Laboratories, Garscube Estate, Switchback Road, Bearsden, Glasgow G61 1BD, UK; 2Enact Pharma Plc, Porton Down Science Park, Salisbury SP4 0JQ, UK Reactivation of telomerase maintains telomere function malignant cells leading to dose-limiting toxicity. Recent and is considered critical to immortalization in most insights into tumour cell biology have provided a wealth human cancer cells. Elevation of telomerase expression in of possibilities for the development of novel mechanism- cancer cells is highly specific: transcription of both RNA based therapeutics (Garrett and Workman, 1999; (hTR) and protein (hTERT) components is strongly Karamouzis et al., 2002; Keith et al., 2002; Scapin, upregulated in cancer cells relative to normal cells. 2002). Therefore, telomerase promoters may be useful in cancer An interesting target for the development of novel gene therapy by selectively expressing suicide genes in anticancer strategies is telomerase, a ribonucleoprotein cancer cells and not normal cells. One example of suicide reverse transcriptase that extends human telomeres by a gene therapy is the bacterial nitroreductase (NTR) gene, terminal transferase activity (White et al., 2001; Keith which bioactivates the prodrug CB1954 into an active et al., 2002; Mergny et al., 2002). -
Probing the Base Stacking Contributions During
PROBING THE BASE STACKING CONTRIBUTIONS DURING TRANSLESION DNA SYNTHESIS by BABHO DEVADOSS Submitted in partial fulfillment of the requirements For the degree of Doctor of Philosophy Thesis Adviser: Dr. Irene Lee Department of Chemistry CASE WESTERN RESERVE UNIVERSITY January, 2009 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the thesis/dissertation of _____________________________________________________ candidate for the ______________________degree *. (signed)_______________________________________________ (chair of the committee) ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ (date) _______________________ *We also certify that written approval has been obtained for any proprietary material contained therein. ii TABLE OF CONTENTS Title Page…………………………………………………………………………………..i Committee Sign-off Sheet………………………………………………………………...ii Table of Contents…………………………………………………………………………iii List of Tables…………………………………………………………………………….vii List of Figures…………………………………………………………………….………ix Acknowledgements…………………………………………………………….………..xiv List of Abbreviations…………………………………………………………….………xv Abstract………………………………………………………………………………….xix CHAPTER 1 Introduction…………………………………………………………………1 1.1 The Chemistry and Biology of DNA…………………………………………2 1.2 DNA Synthesis……………………………………………………………….6 1.3 Structural Features of DNA Polymerases…………………………………...11 -
A Fluoroorotic Acid-Resistant Mutant of Arabidopsis Defective In
Journal of Experimental Botany, Vol. 57, No. 14, pp. 3563–3573, 2006 doi:10.1093/jxb/erl107 Advance Access publication 12 September, 2006 RESEARCH PAPER A fluoroorotic acid-resistant mutant of Arabidopsis defective in the uptake of uracil George S. Mourad1,*, Bryan M. Snook1, Joshua T. Prabhakar1, Tyler A. Mansfield1 and Neil P. Schultes2 1 Department of Biology, Indiana University-Purdue University Fort Wayne (IPFW), 2101 East Coliseum Blvd, Fort Wayne, IN 46805-1499, USA 2 Department of Biochemistry and Genetics, The Connecticut Agricultural Experiment Station (CAES), 123 Huntington Street, New Haven, CT 06511, USA Received 28 April 2006; Accepted 4 July 2006 Downloaded from Abstract Key words: Arabidopsis, fluoroorotic acid resistance, 5- fluorouracil, mutant, pyrimidine, uracil transport. http://jxb.oxfordjournals.org/ A fluoroorotic acid (FOA)-resistant mutant of Arabi- dopsis thaliana was isolated by screening M2 popula- tions of ethyl methane sulphonate (EMS)-mutagenized Columbia seed. FOA resistance was due to a nuclear Introduction recessive gene, for1-1, which locates to a 519 kb region Pyrimidines play a substantial role in numerous aspects of in chromosome 5. Assays of key regulatory enzymes in plant metabolism. De novo synthesis, modification, reuti- de novo pyrimidine synthesis (uridine monophosphate lization, uptake, salvage, and catabolism govern nucleotide synthase) and salvage biochemistry (thymidine kinase) synthesis, DNA and RNA processing, the biochemistry of at Yale University on December 18, 2012 confirmed that FOA resistance in for1-1/for1-1 plants carbohydrates, glycoproteins, and phospholipids, as well as was not due to altered enzymatic activities. Uptake the synthesis of many species-specific secondary com- studies using radiolabelled purines, pyrimidines, and 14 pounds found in the plant kingdom (reviewed in Ross, [ C]FOA reveal that for1-1/for1-1 plants were specifi- 1991; Kafer and Thornburg, 1999; Moffatt and Ashihara, cally defective in the uptake of uracil or uracil-like 2002; Boldt and Zrenner, 2003; Stasolla et al., 2003; Kafer bases. -
Study of Purine Metabolism in a Xanthinuric Female
Study of Purine Metabolism in a Xanthinuric Female MICHAEL J. BRADFORD, IRWIN H. KRAKOFF, ROBERT LEEPER, and M. EARL BALis From the Sloan-Kettering Institute, Sloan-Kettering Division of Cornell University Graduate School of Medical Sciences, and the Department of Medicine of Memorial and James Ewing Hospitals, New York 10021 A B S TR A C T A case of xanthinuria is briefly de- Case report in brief. The patient is a 62 yr old scribed, and the results of in vivo studies with Puerto Rican grandmother, whose illness is de- 4C-labeled oxypurines are discussed. The data scribed in detail elsewhere.' Except for mild pso- demonstrate that the rate of the turnover of uric riasis present for 30 yr, she has been in good acid is normal, despite an extremely small uric health. On 26 June 1966, the patient was admitted acid pool. Xanthine and hypoxanthine pools were to the Second (Cornell) Medical Service, Bellevue measured and their metabolism evaluated. The Hospital, with a 3 day history of pain in the right bulk of the daily pool of 276 mg of xanthine, but foot and fever. The admission physical examina- only 6% of the 960 mg of hypoxanthine, is ex- tion confirmed the presence of monoarticular ar- creted. Thus, xanthine appears to be a metabolic thritis and mild psoriasis. The patient's course in end product, whereas hypoxanthine is an active the hospital was characterized by recurrent fevers intermediate. Biochemical implications of this find- to 104°F and migratory polyarthritis, affecting ing are discussed. both ankles, knees, elbows, wrists, and hands over a 6 wk period. -
Implications of Oxidative Stress in Glioblastoma Multiforme Following Treatment with Purine Derivatives
antioxidants Article Implications of Oxidative Stress in Glioblastoma Multiforme Following Treatment with Purine Derivatives Marta Orlicka-Płocka 1,† , Agnieszka Fedoruk-Wyszomirska 1,† , Dorota Gurda-Wo´zna 1 , Paweł Pawelczak 1 , Patrycja Krawczyk 2, Małgorzata Giel-Pietraszuk 1, Grzegorz Framski 1 , Tomasz Ostrowski 1 and Eliza Wyszko 1,* 1 Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 12/14, 61-704 Poznan, Poland; [email protected] (M.O.-P.); [email protected] (A.F.-W.); [email protected] (D.G.-W.); [email protected] (P.P.); [email protected] (M.G.-P.); [email protected] (G.F.); [email protected] (T.O.) 2 MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK; [email protected] * Correspondence: [email protected] † Equally contributed as the first author. Abstract: Recently, small compound-based therapies have provided new insights into the treatment of glioblastoma multiforme (GBM) by inducing oxidative impairment. Kinetin riboside (KR) and newly designed derivatives (8-azaKR, 7-deazaKR) selectively affect the molecular pathways crucial for cell growth by interfering with the redox status of cancer cells. Thus, these compounds might serve as potential alternatives in the oxidative therapy of GBM. The increased basal levels of reactive oxygen species (ROS) in GBM support the survival of cancer cells and cause drug resistance. The simplest Citation: Orlicka-Płocka, M.; approach to induce cell death is to achieve the redox threshold and circumvent the antioxidant Fedoruk-Wyszomirska, A.; defense mechanisms. Consequently, cells become more sensitive to oxidative stress (OS) caused by Gurda-Wo´zna,D.; Pawelczak, P.; exogenous agents. -
Two Saporin-Containing Immunotoxins Specific for CD20
toxins Article Two Saporin-Containing Immunotoxins Specific for CD20 and CD22 Show Different Behavior in Killing Lymphoma Cells Letizia Polito *,†, Daniele Mercatelli †, Massimo Bortolotti †, Stefania Maiello, Alice Djemil, Maria Giulia Battelli and Andrea Bolognesi Department of Experimental, Diagnostic and Specialty Medicine—DIMES, General Pathology Section, Alma Mater Studiorum—University of Bologna, Via S. Giacomo 14, 40126 Bologna, Italy; [email protected] (D.M.); [email protected] (M.B.); [email protected] (S.M.); [email protected] (A.D.); [email protected] (M.G.B.); [email protected] (A.B.) * Correspondence: [email protected]; Tel.: +39-051-209-4700 † These authors contributed equally to this work. Academic Editors: Daniel Gillet and Julien Barbier Received: 12 April 2017; Accepted: 26 May 2017; Published: 30 May 2017 Abstract: Immunotoxins (ITs) are hybrid proteins combining the binding specificity of antibodies with the cytocidal properties of toxins. They represent a promising approach to lymphoma therapy. The cytotoxicity of two immunotoxins obtained by chemical conjugation of the plant toxin saporin-S6 with the anti-CD20 chimeric antibody rituximab and the anti-CD22 murine antibody OM124 were evaluated on the CD20-/CD22-positive cell line Raji. Both ITs showed strong cytotoxicity for Raji cells, but the anti-CD22 IT was two logs more efficient in killing, probably because of its faster internalization. The anti-CD22 IT gave slower but greater caspase activation than the anti-CD20 IT. The cytotoxic effect of both immunotoxins can be partially prevented by either the pan-caspase inhibitor Z-VAD or the necroptosis inhibitor necrostatin-1.