RNA-Directed Actions of 8-Chloro-Adenosine in Multiple Myeloma Cells
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Cancer Drug Pharmacology Table
CANCER DRUG PHARMACOLOGY TABLE Cytotoxic Chemotherapy Drugs are classified according to the BC Cancer Drug Manual Monographs, unless otherwise specified (see asterisks). Subclassifications are in brackets where applicable. Alkylating Agents have reactive groups (usually alkyl) that attach to Antimetabolites are structural analogues of naturally occurring molecules DNA or RNA, leading to interruption in synthesis of DNA, RNA, or required for DNA and RNA synthesis. When substituted for the natural body proteins. substances, they disrupt DNA and RNA synthesis. bendamustine (nitrogen mustard) azacitidine (pyrimidine analogue) busulfan (alkyl sulfonate) capecitabine (pyrimidine analogue) carboplatin (platinum) cladribine (adenosine analogue) carmustine (nitrosurea) cytarabine (pyrimidine analogue) chlorambucil (nitrogen mustard) fludarabine (purine analogue) cisplatin (platinum) fluorouracil (pyrimidine analogue) cyclophosphamide (nitrogen mustard) gemcitabine (pyrimidine analogue) dacarbazine (triazine) mercaptopurine (purine analogue) estramustine (nitrogen mustard with 17-beta-estradiol) methotrexate (folate analogue) hydroxyurea pralatrexate (folate analogue) ifosfamide (nitrogen mustard) pemetrexed (folate analogue) lomustine (nitrosurea) pentostatin (purine analogue) mechlorethamine (nitrogen mustard) raltitrexed (folate analogue) melphalan (nitrogen mustard) thioguanine (purine analogue) oxaliplatin (platinum) trifluridine-tipiracil (pyrimidine analogue/thymidine phosphorylase procarbazine (triazine) inhibitor) -
(LRV1) Pathogenicity Factor
Antiviral screening identifies adenosine analogs PNAS PLUS targeting the endogenous dsRNA Leishmania RNA virus 1 (LRV1) pathogenicity factor F. Matthew Kuhlmanna,b, John I. Robinsona, Gregory R. Bluemlingc, Catherine Ronetd, Nicolas Faseld, and Stephen M. Beverleya,1 aDepartment of Molecular Microbiology, Washington University School of Medicine in St. Louis, St. Louis, MO 63110; bDepartment of Medicine, Division of Infectious Diseases, Washington University School of Medicine in St. Louis, St. Louis, MO 63110; cEmory Institute for Drug Development, Emory University, Atlanta, GA 30329; and dDepartment of Biochemistry, University of Lausanne, 1066 Lausanne, Switzerland Contributed by Stephen M. Beverley, December 19, 2016 (sent for review November 21, 2016; reviewed by Buddy Ullman and C. C. Wang) + + The endogenous double-stranded RNA (dsRNA) virus Leishmaniavirus macrophages infected in vitro with LRV1 L. guyanensis or LRV2 (LRV1) has been implicated as a pathogenicity factor for leishmaniasis Leishmania aethiopica release higher levels of cytokines, which are in rodent models and human disease, and associated with drug-treat- dependent on Toll-like receptor 3 (7, 10). Recently, methods for ment failures in Leishmania braziliensis and Leishmania guyanensis systematically eliminating LRV1 by RNA interference have been − infections. Thus, methods targeting LRV1 could have therapeutic ben- developed, enabling the generation of isogenic LRV1 lines and efit. Here we screened a panel of antivirals for parasite and LRV1 allowing the extension of the LRV1-dependent virulence paradigm inhibition, focusing on nucleoside analogs to capitalize on the highly to L. braziliensis (12). active salvage pathways of Leishmania, which are purine auxo- A key question is the relevancy of the studies carried out in trophs. -
The Biochemistry of Gout: a USMLE Step 1 Study Aid
The Biochemistry of Gout: A USMLE Step 1 Study Aid BMS 6204 May 26, 2005 Compiled by: Todd Kerensky Elizabeth Ballard Brendan Prendergast Eric Ritchie 1 Introduction Gout is a systemic disease caused by excess uric acid as the result of deficient purine metabolism. Clinically, gout is marked by peripheral arthritis and painful inflammation in joints resulting from deposition of uric acid in joint synovia as monosodium urate crystals. Although gout is the most common crystal-induced arthritis, a condition known as pseudogout can commonly be mistaken for gout in the clinic. Pseudogout results from deposition of calcium pyrophosphatase (CPP) crystals in synovial spaces, but causes nearly identical clinical presentation. Clinical findings Crystal-induced arthritis such as gout and pseudogout differ from other types of arthritis in their clinical presentations. The primary feature differentiating gout from other types of arthritis is the spontaneity and abruptness of onset of inflammation. Additionally, the inflammation from gout and pseudogout are commonly found in a single joint. Gout and pseudogout typically present with Podagra, a painful inflammation of the metatarsal- phalangeal joint of the great toe. However, gout can also present with spontaneous edema and painful inflammation of any other joint, but most commonly the ankle, wrist, or knee. As an exception, a spontaneous painful inflammation in the glenohumeral joint is usually the result of pseudogout. It is important to recognize the clinical differences between gout, pseudogout and other types of arthritis because the treatments differ markedly (Kaplan 2005). Pathophysiology and Treatment of Gout Although gout affects peripheral joints in clinical presentation, it is important to recognize that it is a systemic disorder caused by either overproduction or underexcretion of uric acid. -
Analysis of Tautomeric Equilibrium of the Analogue D(Dinitro-Tc(O))TP During Incorporation by the Klenow Fragment of DNA Polymerase I
Analysis of Tautomeric Equilibrium of the Analogue d(dinitro-tC(O))TP During Incorporation by the Klenow Fragment of DNA Polymerase I Arielle Baker Monday, April 7th, 2014: 4:00pm Thesis Advisor Robert Kuchta, Ph.D. | Dept. of Chemistry and Biochemistry Committee Members Robert Knight, Ph.D. | Dept. of Chemistry and Biochemistry Jennifer Martin, Ph.D. | Dept. of Molecular, Cellular and Developmental Biology This thesis is submitted in partial fulfillment of the requirements for graduation with honors in the Department of Molecular, Cellular and Developmental Biology at the University of Colorado, Boulder. Acknowledgements My most heartfelt thanks goes to my advisor, mentor and friend Dr. Rob Kuchta, for his unending patience and willingness to share his knowledge with me, as well as his continued support for my pursuit of science. I would like to thank my friends in the Kuchta lab, and to some colleagues in particular. Thank you to Dr. Andrew Olsen and Dr. Gudrun Stengel for being the very first overseers of my work, and for not scaring me off. Thanks to Dr. Ashwani Vashishtha, Dr. Joshua Gosling, Sarah Dickerson, Clarinda Hougen and Taylor Minckley for the many laughs we’ve shared benchside, and for answering even the most insignificant of questions. Thank you to my committee members, Dr. Jennifer Martin and Dr. Rob Knight, for their assistance in navigating my thesis work. My work would not have been possible without generous funding from the National Institutes of Health. Thank you to my dear friend Makenna Morck for always being available to discuss biochemistry with me in the wee hours of the morning. -
Purine Analogue 6-Methylmercaptopurine Riboside Inhibits Early and Late Phases of the Angiogenesis Process1
[CANCER RESEARCH 59, 2417–2424, May 15, 1999] Purine Analogue 6-Methylmercaptopurine Riboside Inhibits Early and Late Phases of the Angiogenesis Process1 Marco Presta,2 Marco Rusnati, Mirella Belleri, Lucia Morbidelli, Marina Ziche, and Domenico Ribatti Unit of General Pathology and Immunology, Department of Biomedical Sciences and Biotechnology, School of Medicine, University of Brescia, 25123 Brescia [M. P., M. R., M. B.]; Centro Interuniversitario di Medicina Molecolare e Biofisica Applicata (C.I.M.M.B.A.), Department of Pharmacology, University of Florence, 50134 Florence [L. M., M. Z.]; and Institute of Human Anatomy, Histology, and General Embryology, University of Bari, 70124 Bari [D. R.], Italy ABSTRACT purine synthesis and purine interconversion reactions, and their me- tabolites can be incorporated into nucleic acids (3). 6-TG3 and Angiogenesis has been identified as an important target for antineo- 6-MMPR also alter membrane glycoprotein synthesis (4). Purine plastic therapy. The use of purine analogue antimetabolites in combina- analogues can act as protein kinase inhibitors; 6-MMPR is a highly tion chemotherapy of solid tumors has been proposed. To assess the possibility that selected purine analogues may affect tumor neovascular- effective inhibitor of nerve growth factor-activated protein kinase N ization, 6-methylmercaptopurine riboside (6-MMPR), 6-methylmercapto- (5), and 2-AP inhibits proto-oncogene and IFN gene transcription (6). purine, 2-aminopurine, and adenosine were evaluated for the capacity to Moreover, purine analogues have found application in immunosup- inhibit angiogenesis in vitro and in vivo. 6-MMPR inhibited fibroblast pressive and antiviral therapy (3). At present, 6-MMP and 6-TG growth factor-2 (FGF2)-induced proliferation and delayed the repair of continue to be used mainly in the management of acute leukemia. -
Table S1. List of Oligonucleotide Primers Used
Table S1. List of oligonucleotide primers used. Cla4 LF-5' GTAGGATCCGCTCTGTCAAGCCTCCGACC M629Arev CCTCCCTCCATGTACTCcgcGATGACCCAgAGCTCGTTG M629Afwd CAACGAGCTcTGGGTCATCgcgGAGTACATGGAGGGAGG LF-3' GTAGGCCATCTAGGCCGCAATCTCGTCAAGTAAAGTCG RF-5' GTAGGCCTGAGTGGCCCGAGATTGCAACGTGTAACC RF-3' GTAGGATCCCGTACGCTGCGATCGCTTGC Ukc1 LF-5' GCAATATTATGTCTACTTTGAGCG M398Arev CCGCCGGGCAAgAAtTCcgcGAGAAGGTACAGATACGc M398Afwd gCGTATCTGTACCTTCTCgcgGAaTTcTTGCCCGGCGG LF-3' GAGGCCATCTAGGCCATTTACGATGGCAGACAAAGG RF-5' GTGGCCTGAGTGGCCATTGGTTTGGGCGAATGGC RF-3' GCAATATTCGTACGTCAACAGCGCG Nrc2 LF-5' GCAATATTTCGAAAAGGGTCGTTCC M454Grev GCCACCCATGCAGTAcTCgccGCAGAGGTAGAGGTAATC M454Gfwd GATTACCTCTACCTCTGCggcGAgTACTGCATGGGTGGC LF-3' GAGGCCATCTAGGCCGACGAGTGAAGCTTTCGAGCG RF-5' GAGGCCTGAGTGGCCTAAGCATCTTGGCTTCTGC RF-3' GCAATATTCGGTCAACGCTTTTCAGATACC Ipl1 LF-5' GTCAATATTCTACTTTGTGAAGACGCTGC M629Arev GCTCCCCACGACCAGCgAATTCGATagcGAGGAAGACTCGGCCCTCATC M629Afwd GATGAGGGCCGAGTCTTCCTCgctATCGAATTcGCTGGTCGTGGGGAGC LF-3' TGAGGCCATCTAGGCCGGTGCCTTAGATTCCGTATAGC RF-5' CATGGCCTGAGTGGCCGATTCTTCTTCTGTCATCGAC RF-3' GACAATATTGCTGACCTTGTCTACTTGG Ire1 LF-5' GCAATATTAAAGCACAACTCAACGC D1014Arev CCGTAGCCAAGCACCTCGgCCGAtATcGTGAGCGAAG D1014Afwd CTTCGCTCACgATaTCGGcCGAGGTGCTTGGCTACGG LF-3' GAGGCCATCTAGGCCAACTGGGCAAAGGAGATGGA RF-5' GAGGCCTGAGTGGCCGTGCGCCTGTGTATCTCTTTG RF-3' GCAATATTGGCCATCTGAGGGCTGAC Kin28 LF-5' GACAATATTCATCTTTCACCCTTCCAAAG L94Arev TGATGAGTGCTTCTAGATTGGTGTCggcGAAcTCgAGCACCAGGTTG L94Afwd CAACCTGGTGCTcGAgTTCgccGACACCAATCTAGAAGCACTCATCA LF-3' TGAGGCCATCTAGGCCCACAGAGATCCGCTTTAATGC RF-5' CATGGCCTGAGTGGCCAGGGCTAGTACGACCTCG -
Recombinant Human Adenosine Kinase/ADK
Recombinant Human Adenosine Kinase/ADK Catalog Number: 8024-AK DESCRIPTION Source E. coliderived Ala2His362 with a Cterminal 6His tag Accession # P55263 Nterminal Sequence Ala2 Analysis Predicted Molecular 41 kDa Mass SPECIFICATIONS SDSPAGE 4345 kDa, reducing conditions Activity Measured by its ability to phosphorylate Adenosine. The specific activity is >7 pmol/min/μg, as measured under the described conditions. Endotoxin Level <1.0 EU per 1 μg of the protein by the LAL method. Purity >95%, by SDSPAGE under reducing conditions and visualized by Colloidal Coomassie® Blue stain at 5 μg per lane. Formulation Supplied as a 0.2 μm filtered solution in Tris and NaCl. See Certificate of Analysis for details. Activity Assay Protocol Materials l Assay Buffer: (10X) 250 mM HEPES, 1.5 M NaCl, 100 mM MgCl2, 100 mM CaCl2 pH 7.0 (supplied in kit) l Recombinant Human Adenosine Kinase/ADK (Catalog # 8024AK) l Adenosine (Sigma, Catalog # A9251), 10 mM stock in deionized water l Adenosine triphosphate (ATP) (Sigma, Catalog # A7699), 10 mM stock in deionized water l Universal Kinase Activity Kit (Catalog # EA004) l 96well Clear Plate (Costar, Catalog # 92592) l Plate Reader (Model: SpectraMax Plus by Molecular Devices) or equivalent Assay 1. Prepare 1X Assay Buffer by diluting 10X Assay Buffer in deionized water. 2. Dilute 1 mM Phosphate Standard provided by the Universal Kinase Activity Kit by adding 40 µL of the 1 mM Phosphate Standard to 360 µL of 1X Assay Buffer for a 100 µM stock. 3. Prepare standard curve by performing seven onehalf serial dilutions of the 100 µM Phosphate stock in 1X Assay Buffer. -
Focus on the A3 Adenosine Receptor
JOURNAL OF CELLULAR PHYSIOLOGY 186:19±23 (2001) Differential Effect of Adenosine on Tumor and Normal Cell Growth: Focus on the A3 Adenosine Receptor GIL OHANA, SARA BAR-YEHUDA, FAINA BARER, AND PNINA FISHMAN* Laboratory of Clinical and Tumor Immunology, The Felsenstein Medical Research Center, Tel-Aviv University, Rabin Medical Center, Petach-Tikva, Israel Adenosine is an ubiquitous nucleoside present in all body cells. It is released from metabolically active or stressed cells and subsequently acts as a regulatory mole- cule through binding to speci®c A1, A2A,A2B and A3 cell surface receptors. The synthesis of agonists and antagonists to the adenosine receptors and their cloning enabled the exploration of their physiological functions. As nearly all cells express speci®c adenosine receptors, adenosine serves as a physiological regulator and acts as a cardioprotector, neuroprotector, chemoprotector, and as an immuno- modulator. At the cellular level, activation of the receptors by adenosine initiates signal transduction mechanisms through G-protein associated receptors. Adeno- sine's unique characteristic is to differentially modulate normal and transformed cell growth, depending upon its extracellular concentration, the expression of adenosine cell surface receptors, and the physiological state of the target cell. Stimulation of cell proliferation following incubation with adenosine has been demonstrated in a variety of normal cells in the range of low micromolar con- centrations, including mesangial and thymocyte cells, Swiss mouse 3T3 ®bro- blasts, and bone marrow cells. Induction of apoptosis in tumor or normal cells was shown at higher adenosine concentrations (>100 mM) such as in leukemia HL-60, lymphoma U-937, A431 epidermoid cells, and GH3 tumor pituitary cell lines. -
A Novel Adenosine Kinase from Bombyx Mori: Enzymatic Activity, Structure, and Biological Function
International Journal of Molecular Sciences Article A Novel Adenosine Kinase from Bombyx mori: Enzymatic Activity, Structure, and Biological Function Kai Song 1, Yu Li 1, Huawei He 1,2,3,* , Lina Liu 1, Ping Zhao 1,3, Qingyou Xia 1,3 and Yejing Wang 2,* 1 State Key Laboratory of Silkworm Genome Biology, Biological Science Research Center, Southwest University, Beibei, Chongqing 400715, China 2 College of Biotechnology, Southwest University, Beibei, Chongqing 400715, China 3 Chongqing Key Laboratory of Sericultural Science, Chongqing Engineering and Technology Research Center for Novel Silk Materials, Southwest University, Beibei, Chongqing 400715, China * Correspondence: [email protected] (H.H.); [email protected] (Y.W.); Tel.: +86-23-6825-1575 (H.H. & Y.W.) Received: 6 July 2019; Accepted: 29 July 2019; Published: 31 July 2019 Abstract: Adenosine kinase (ADK) is the first enzyme in the adenosine remediation pathway that catalyzes adenosine phosphorylation into adenosine monophosphate, thus regulating adenosine homeostasis in cells. To obtain new insights into ADK from Bombyx mori (BmADK), we obtained recombinant BmADK, and analyzed its activity, structure, and function. Gel-filtration showed BmADK was a monomer with molecular weight of approximately 38 kDa. Circular dichroism spectra indicated BmADK had 36.8% α-helix and 29.9% β-strand structures, respectively. The structure of BmADK was stable in pH 5.0–11.0, and not affected under 30 ◦C. The melting temperature and the enthalpy and entropy changes in the thermal transition of BmADK were 46.51 0.50 C, 253.43 0.20 KJ/mol, ± ◦ ± and 0.79 0.01 KJ/(mol K), respectively. -
Selective Ablation of Human Cancer Cells by Telomerase-Specific
Oncogene (2003) 22, 370–380 & 2003 Nature Publishing Group All rights reserved 0950-9232/03 $25.00 www.nature.com/onc Selective ablation of human cancer cells by telomerase-specific adenoviral suicide gene therapy vectors expressing bacterial nitroreductase Alan E Bilsland1, Claire J Anderson1, Aileen J Fletcher-Monaghan1, Fiona McGregor1, TR Jeffry Evans1, Ian Ganly1, Richard J Knox2, Jane A Plumb1 and W Nicol Keith*,1 1Cancer Research UK Department of Medical Oncology, University of Glasgow, Cancer Research UK Beatson Laboratories, Garscube Estate, Switchback Road, Bearsden, Glasgow G61 1BD, UK; 2Enact Pharma Plc, Porton Down Science Park, Salisbury SP4 0JQ, UK Reactivation of telomerase maintains telomere function malignant cells leading to dose-limiting toxicity. Recent and is considered critical to immortalization in most insights into tumour cell biology have provided a wealth human cancer cells. Elevation of telomerase expression in of possibilities for the development of novel mechanism- cancer cells is highly specific: transcription of both RNA based therapeutics (Garrett and Workman, 1999; (hTR) and protein (hTERT) components is strongly Karamouzis et al., 2002; Keith et al., 2002; Scapin, upregulated in cancer cells relative to normal cells. 2002). Therefore, telomerase promoters may be useful in cancer An interesting target for the development of novel gene therapy by selectively expressing suicide genes in anticancer strategies is telomerase, a ribonucleoprotein cancer cells and not normal cells. One example of suicide reverse transcriptase that extends human telomeres by a gene therapy is the bacterial nitroreductase (NTR) gene, terminal transferase activity (White et al., 2001; Keith which bioactivates the prodrug CB1954 into an active et al., 2002; Mergny et al., 2002). -
Probing the Base Stacking Contributions During
PROBING THE BASE STACKING CONTRIBUTIONS DURING TRANSLESION DNA SYNTHESIS by BABHO DEVADOSS Submitted in partial fulfillment of the requirements For the degree of Doctor of Philosophy Thesis Adviser: Dr. Irene Lee Department of Chemistry CASE WESTERN RESERVE UNIVERSITY January, 2009 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the thesis/dissertation of _____________________________________________________ candidate for the ______________________degree *. (signed)_______________________________________________ (chair of the committee) ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ (date) _______________________ *We also certify that written approval has been obtained for any proprietary material contained therein. ii TABLE OF CONTENTS Title Page…………………………………………………………………………………..i Committee Sign-off Sheet………………………………………………………………...ii Table of Contents…………………………………………………………………………iii List of Tables…………………………………………………………………………….vii List of Figures…………………………………………………………………….………ix Acknowledgements…………………………………………………………….………..xiv List of Abbreviations…………………………………………………………….………xv Abstract………………………………………………………………………………….xix CHAPTER 1 Introduction…………………………………………………………………1 1.1 The Chemistry and Biology of DNA…………………………………………2 1.2 DNA Synthesis……………………………………………………………….6 1.3 Structural Features of DNA Polymerases…………………………………...11 -
A Fluoroorotic Acid-Resistant Mutant of Arabidopsis Defective In
Journal of Experimental Botany, Vol. 57, No. 14, pp. 3563–3573, 2006 doi:10.1093/jxb/erl107 Advance Access publication 12 September, 2006 RESEARCH PAPER A fluoroorotic acid-resistant mutant of Arabidopsis defective in the uptake of uracil George S. Mourad1,*, Bryan M. Snook1, Joshua T. Prabhakar1, Tyler A. Mansfield1 and Neil P. Schultes2 1 Department of Biology, Indiana University-Purdue University Fort Wayne (IPFW), 2101 East Coliseum Blvd, Fort Wayne, IN 46805-1499, USA 2 Department of Biochemistry and Genetics, The Connecticut Agricultural Experiment Station (CAES), 123 Huntington Street, New Haven, CT 06511, USA Received 28 April 2006; Accepted 4 July 2006 Downloaded from Abstract Key words: Arabidopsis, fluoroorotic acid resistance, 5- fluorouracil, mutant, pyrimidine, uracil transport. http://jxb.oxfordjournals.org/ A fluoroorotic acid (FOA)-resistant mutant of Arabi- dopsis thaliana was isolated by screening M2 popula- tions of ethyl methane sulphonate (EMS)-mutagenized Columbia seed. FOA resistance was due to a nuclear Introduction recessive gene, for1-1, which locates to a 519 kb region Pyrimidines play a substantial role in numerous aspects of in chromosome 5. Assays of key regulatory enzymes in plant metabolism. De novo synthesis, modification, reuti- de novo pyrimidine synthesis (uridine monophosphate lization, uptake, salvage, and catabolism govern nucleotide synthase) and salvage biochemistry (thymidine kinase) synthesis, DNA and RNA processing, the biochemistry of at Yale University on December 18, 2012 confirmed that FOA resistance in for1-1/for1-1 plants carbohydrates, glycoproteins, and phospholipids, as well as was not due to altered enzymatic activities. Uptake the synthesis of many species-specific secondary com- studies using radiolabelled purines, pyrimidines, and 14 pounds found in the plant kingdom (reviewed in Ross, [ C]FOA reveal that for1-1/for1-1 plants were specifi- 1991; Kafer and Thornburg, 1999; Moffatt and Ashihara, cally defective in the uptake of uracil or uracil-like 2002; Boldt and Zrenner, 2003; Stasolla et al., 2003; Kafer bases.