Selenium in Human Health and Gut Microflora
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The Selenium Recycling Enzyme Selenocysteine Lyase: Regulation and Physiological Role in Glucose and Lipid Metabolism
THE SELENIUM RECYCLING ENZYME SELENOCYSTEINE LYASE: REGULATION AND PHYSIOLOGICAL ROLE IN GLUCOSE AND LIPID METABOLISM A DISSERTATION SUBMITTED TO THE GRADUATE DIVISION OF THE UNIVERSITY OF HAWAI‘I AT MĀNOA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN CELL AND MOLECULAR BIOLOGY MAY 2012 BY LUCIA ANDREIA SEALE Dissertation Committee: Marla J. Berry, Chairperson Robert A. Nichols Jun Pane‘e P. Reed Larsen E. Gordon Grau To my beloved parents Wilson & Madalena To my dear love André ii ACKNOWLEDGEMENTS A Ph.D. is a journey in a rough sea. As in all memorable expeditions, there is more to learn while traveling towards the final destination than at the destination itself. In several ways, it is the path and how you face the unexpected obstacles in this path that makes you a Doctor. The Ph.D. expedition does not allow an easy ride. While you travel through the waves and storms of your topic, figuring out a lot on and about yourself, you also encounter along the way people that make your stressful journey happier, nicer, safer, funnier and – why not – more challenging. They provided the emotional background that is not described in a scientific document. In my Ph.D. journey, these are the people about whom I’ll talk years ahead to friends, to whom I will silently smile when the nostalgic waves of the Ph.D. path break in the shores of my life. They are the unforgettable people that allowed me to arrive safe and sound in Doctorland. First and foremost, my greatest acknowledgement and gratitude goes to Dr. -
Selenium Vs. Sulfur: Investigating the Substrate Specificity of a Selenocysteine Lyase
University of Central Florida STARS Electronic Theses and Dissertations, 2004-2019 2019 Selenium vs. Sulfur: Investigating the Substrate Specificity of a Selenocysteine Lyase Michael Johnstone University of Central Florida Part of the Biotechnology Commons Find similar works at: https://stars.library.ucf.edu/etd University of Central Florida Libraries http://library.ucf.edu This Masters Thesis (Open Access) is brought to you for free and open access by STARS. It has been accepted for inclusion in Electronic Theses and Dissertations, 2004-2019 by an authorized administrator of STARS. For more information, please contact [email protected]. STARS Citation Johnstone, Michael, "Selenium vs. Sulfur: Investigating the Substrate Specificity of a Selenocysteine Lyase" (2019). Electronic Theses and Dissertations, 2004-2019. 6511. https://stars.library.ucf.edu/etd/6511 SELENIUM VS. SULFUR: INVESTIGATING THE SUBSTRATE SPECIFICITY OF A SELENOCYSTEINE LYASE by MICHAEL ALAN JOHNSTONE B.S. University of Central Florida, 2017 A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science in the Burnett School of Biomedical Sciences in the College of Medicine at the University of Central Florida Orlando, Florida Summer Term 2019 Major Professor: William T. Self © 2019 Michael Alan Johnstone ii ABSTRACT Selenium is a vital micronutrient in many organisms. While traces are required for survival, excess amounts are toxic; thus, selenium can be regarded as a biological “double-edged sword”. Selenium is chemically similar to the essential element sulfur, but curiously, evolution has selected the former over the latter for a subset of oxidoreductases. Enzymes involved in sulfur metabolism are less discriminate in terms of preventing selenium incorporation; however, its specific incorporation into selenoproteins reveals a highly discriminate process that is not completely understood. -
Purification and Characterization of a Novel Selenocysteine Lyase from Enterococcus Faecalis
University of Central Florida STARS Electronic Theses and Dissertations, 2004-2019 2014 Purification and Characterization of a Novel Selenocysteine Lyase from Enterococcus faecalis Samantha Nelson University of Central Florida Part of the Biotechnology Commons, and the Molecular Biology Commons Find similar works at: https://stars.library.ucf.edu/etd University of Central Florida Libraries http://library.ucf.edu This Masters Thesis (Open Access) is brought to you for free and open access by STARS. It has been accepted for inclusion in Electronic Theses and Dissertations, 2004-2019 by an authorized administrator of STARS. For more information, please contact [email protected]. STARS Citation Nelson, Samantha, "Purification and Characterization of a Novel Selenocysteine Lyase from Enterococcus faecalis" (2014). Electronic Theses and Dissertations, 2004-2019. 4807. https://stars.library.ucf.edu/etd/4807 PURIFICATION AND CHARACTERIZATION OF A NOVEL SELENOCYSTEINE LYASE FROM ENTEROCOCCUS FAECALIS by SAMANTHA NELSON B.S. University of Central Florida, 2012 A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science in the Burnett School of Biomedical Sciences in the College of Medicine at the University of Central Florida Orlando, Florida Summer Term 2014 Major Professor: William T. Self © 2014 Samantha Nelson ii ABSTRACT A previous study identified Enterococcus faecalis as one of two bacteria known to have the selD gene and other selenium related genes without having the genes necessary to make selenocysteine or selenouridine. EF2570, a gene in the cluster, was later shown to be upregulated during biofilm formation and also responsible for a selenite- and molybdate-dependent increase in biofilm formation in vitro. -
Parental Selenium Nutrition Affects the One-Carbon Metabolism
life Article Parental Selenium Nutrition Affects the One-Carbon Metabolism and the Hepatic DNA Methylation Pattern of Rainbow Trout (Oncorhynchus mykiss) in the Progeny 1, 2, 1 1 Pauline Wischhusen y , Takaya Saito y ,Cécile Heraud , Sadasivam J. Kaushik , 1 2 1, , Benoit Fauconneau , Philip Antony Jesu Prabhu , Stéphanie Fontagné-Dicharry * y 2, and Kaja H. Skjærven y 1 INRAE, University of Pau and Pays de l’Adour, E2S UPPA, NUMEA, 64310 Saint Pee sur Nivelle, France; [email protected] (P.W.); [email protected] (C.H.); [email protected] (S.J.K.); [email protected] (B.F.) 2 Institute of Marine Research, P.O. Box 1870, 5020 Bergen, Norway; [email protected] (T.S.); [email protected] (P.A.J.P.); [email protected] (K.H.S.) * Correspondence: [email protected] These authors contributed equally to this work. y Received: 11 June 2020; Accepted: 23 July 2020; Published: 25 July 2020 Abstract: Selenium is an essential micronutrient and its metabolism is closely linked to the methionine cycle and transsulfuration pathway. The present study evaluated the effect of two different selenium supplements in the diet of rainbow trout (Onchorhynchus mykiss) broodstock on the one-carbon metabolism and the hepatic DNA methylation pattern in the progeny. Offspring of three parental groups of rainbow trout, fed either a control diet (NC, basal Se level: 0.3 mg/kg) or a diet supplemented with sodium selenite (SS, 0.8 mg Se/kg) or hydroxy-selenomethionine (SO, 0.7 mg Se/kg), were collected at swim-up fry stage. -
Selenocysteine in Proteins—Properties and Biotechnological Use
Biochimica et Biophysica Acta 1726 (2005) 1 – 13 http://www.elsevier.com/locate/bba Review Selenocysteine in proteins—properties and biotechnological use Linda Johanssona, Guro Gafvelinb, Elias S.J. Arne´ra,* aMedical Nobel Institute for Biochemistry, Department of Medical Biochemistry and Biophysics, Karolinska Institute, SE-171 77 Stockholm, Sweden bDepartment of Medicine, Clinical Immunology and Allergy Unit, Karolinska Institute and University Hospital, Stockholm, Sweden Received 12 April 2005; received in revised form 4 May 2005; accepted 7 May 2005 Available online 1 June 2005 Abstract Selenocysteine (Sec), the 21st amino acid, exists naturally in all kingdoms of life as the defining entity of selenoproteins. Sec is a cysteine (Cys) residue analogue with a selenium-containing selenol group in place of the sulfur-containing thiol group in Cys. The selenium atom gives Sec quite different properties from Cys. The most obvious difference is the lower pKa of Sec, and Sec is also a stronger nucleophile than Cys. Proteins naturally containing Sec are often enzymes, employing the reactivity of the Sec residue during the catalytic cycle and therefore Sec is normally essential for their catalytic efficiencies. Other unique features of Sec, not shared by any of the other 20 common amino acids, derive from the atomic weight and chemical properties of selenium and the particular occurrence and properties of its stable and radioactive isotopes. Sec is, moreover, incorporated into proteins by an expansion of the genetic code as the translation of selenoproteins involves the decoding of a UGA codon, otherwise being a termination codon. In this review, we will describe the different unique properties of Sec and we will discuss the prerequisites for selenoprotein production as well as the possible use of Sec introduction into proteins for biotechnological applications. -
Catalytic Site Cysteines of Thiol Enzyme: Sulfurtransferases
SAGE-Hindawi Access to Research Journal of Amino Acids Volume 2011, Article ID 709404, 7 pages doi:10.4061/2011/709404 Review Article Catalytic Site Cysteines of Thiol Enzyme: Sulfurtransferases Noriyuki Nagahara Department of Environmental Medicine, Nippon Medical School, 1-1-5 Sendagi Bunkyo-ku, Tokyo 113-8602, Japan Correspondence should be addressed to Noriyuki Nagahara, [email protected] Received 23 September 2010; Accepted 9 November 2010 Academic Editor: Shandar Ahmad Copyright © 2011 Noriyuki Nagahara. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Thiol enzymes have single- or double-catalytic site cysteine residues and are redox active. Oxidoreductases and isomerases contain double-catalytic site cysteine residues, which are oxidized to a disulfide via a sulfenyl intermediate and reduced to a thiol or a thiolate. The redox changes of these enzymes are involved in their catalytic processes. On the other hand, transferases, and also some phosphatases and hydrolases, have a single-catalytic site cysteine residue. The cysteines are redox active, but their sulfenyl forms, which are inactive, are not well explained biologically. In particular, oxidized forms of sulfurtransferases, such as mercaptopyruvate sulfurtransferase and thiosulfate sulfurtransferase, are not reduced by reduced glutathione but by reduced thioredoxin. This paper focuses on why the catalytic site cysteine of sulfurtransferase is redox active. 1. Introduction Thus, sulfination of cysteine residues is a reversible oxidative process under the conditions that cysteine sulfinic acid Cysteine residues in proteins maintain the protein confor- reductase can access the catalytic site cysteine of an enzyme. -
The Assessment of Selenium Bioaccessibility and Bioavailability from Selenium-Rich Algae
Iowa State University Capstones, Theses and Graduate Theses and Dissertations Dissertations 2020 The assessment of selenium bioaccessibility and bioavailability from selenium-rich algae Laura Ann Walter Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/etd Recommended Citation Walter, Laura Ann, "The assessment of selenium bioaccessibility and bioavailability from selenium-rich algae" (2020). Graduate Theses and Dissertations. 17856. https://lib.dr.iastate.edu/etd/17856 This Thesis is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. The assessment of selenium bioaccessibility and bioavailability from selenium-rich algae by Laura Ann Walter A thesis submitted to the graduate faculty in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE Major: Nutritional Sciences (Human Nutrition) Program of Study Committee: Manju B Reddy, Major Professor Christina Campbell Terri Boylston Zhiyou Wen The student author, whose presentation of the scholarship herein was approved by the program of study committee, is solely responsible for the content of this thesis. The Graduate College will ensure this thesis is globally accessible and will not permit alterations after a degree is conferred. Iowa State University Ames, Iowa 2020 Copyright © Laura Ann Walter, 2020. All rights reserved. ii TABLE OF CONTENTS Page LIST OF FIGURES ..........................…….……………………………………………..……. iv LIST OF TABLES.................................................................................................................... v NOMENCLATURE………………………………………………………………….………. vi ACKNOWLEDGEMENTS……………………………………………………….……….... vii ABSTRACT……………………………………………………………………….…………... viii CHAPTER 1 GENERAL INTRODUCTION…………………………………………....... -
BMC Bioinformatics Biomed Central
BMC Bioinformatics BioMed Central Database Open Access The B6 database: a tool for the description and classification of vitamin B6-dependent enzymatic activities and of the corresponding protein families Riccardo Percudani* and Alessio Peracchi* Address: Department of Biochemistry and Molecular Biology, University of Parma, 43100 Parma, Italy Email: Riccardo Percudani* - [email protected]; Alessio Peracchi* - [email protected] * Corresponding authors Published: 1 September 2009 Received: 9 June 2009 Accepted: 1 September 2009 BMC Bioinformatics 2009, 10:273 doi:10.1186/1471-2105-10-273 This article is available from: http://www.biomedcentral.com/1471-2105/10/273 © 2009 Percudani and Peracchi; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Enzymes that depend on vitamin B6 (and in particular on its metabolically active form, pyridoxal 5'-phosphate, PLP) are of great relevance to biology and medicine, as they catalyze a wide variety of biochemical reactions mainly involving amino acid substrates. Although PLP- dependent enzymes belong to a small number of independent evolutionary lineages, they encompass more than 160 distinct catalytic functions, thus representing a striking example of divergent evolution. The importance and remarkable versatility of these enzymes, as well as the difficulties in their functional classification, create a need for an integrated source of information about them. Description: The B6 database http://bioinformatics.unipr.it/B6db contains documented B6- dependent activities and the relevant protein families, defined as monophyletic groups of sequences possessing the same enzymatic function. -
Supplemental Figures 04 12 2017
Jung et al. 1 SUPPLEMENTAL FIGURES 2 3 Supplemental Figure 1. Clinical relevance of natural product methyltransferases (NPMTs) in brain disorders. (A) 4 Table summarizing characteristics of 11 NPMTs using data derived from the TCGA GBM and Rembrandt datasets for 5 relative expression levels and survival. In addition, published studies of the 11 NPMTs are summarized. (B) The 1 Jung et al. 6 expression levels of 10 NPMTs in glioblastoma versus non‐tumor brain are displayed in a heatmap, ranked by 7 significance and expression levels. *, p<0.05; **, p<0.01; ***, p<0.001. 8 2 Jung et al. 9 10 Supplemental Figure 2. Anatomical distribution of methyltransferase and metabolic signatures within 11 glioblastomas. The Ivy GAP dataset was downloaded and interrogated by histological structure for NNMT, NAMPT, 12 DNMT mRNA expression and selected gene expression signatures. The results are displayed on a heatmap. The 13 sample size of each histological region as indicated on the figure. 14 3 Jung et al. 15 16 Supplemental Figure 3. Altered expression of nicotinamide and nicotinate metabolism‐related enzymes in 17 glioblastoma. (A) Heatmap (fold change of expression) of whole 25 enzymes in the KEGG nicotinate and 18 nicotinamide metabolism gene set were analyzed in indicated glioblastoma expression datasets with Oncomine. 4 Jung et al. 19 Color bar intensity indicates percentile of fold change in glioblastoma relative to normal brain. (B) Nicotinamide and 20 nicotinate and methionine salvage pathways are displayed with the relative expression levels in glioblastoma 21 specimens in the TCGA GBM dataset indicated. 22 5 Jung et al. 23 24 Supplementary Figure 4. -
Recognition of Selenocysteyl-Trna by Elongation Factor Selb
Recognition of Selenocysteyl-tRNASec by Elongation Factor SelB Inaugural-Dissertation zur Erlangung des Grades eines Doktors der Naturwissenschaften an der Fakultät für Medizin der vorlegt von Alena Paleskava aus Minsk Witten 2009 Mentor (Erstgutachter): Prof. Dr. Marina V. Rodnina Fakultatsreferent (Zweitgutachter): Prof. Dr. Wolfgang Wintermeyer Tag der Disputation: 20.05.2009 Table of Contents List of Papers ............................................................................................................. 3 Summary .................................................................................................................... 5 Review ........................................................................................................................ 7 Protein synthesis ......................................................................................................... 7 The steps of protein synthesis ................................................................................. 7 GTPases in translation ............................................................................................. 9 tRNA as an active player in translation .................................................................. 12 The selenocysteine incorporation machinery ............................................................ 17 Selenoproteins ....................................................................................................... 17 Selenocysteine biosynthesis ................................................................................. -
The Role of Selenium in Health and Disease
The Role of Selenium in Health and Disease • Catherine Méplan Hughes and J. David The Role of Selenium in Health and Disease Edited by Catherine Méplan and David J. Hughes Printed Edition of the Special Issue Published in Nutrients www.mdpi.com/journal/nutrients The Role of Selenium in Health and Disease The Role of Selenium in Health and Disease Special Issue Editors Catherine M´eplan David J. Hughes MDPI • Basel • Beijing • Wuhan • Barcelona • Belgrade • Manchester • Tokyo • Cluj • Tianjin Special Issue Editors Catherine Meplan´ David J. Hughes Newcastle University University College Dublin UK Ireland Editorial Office MDPI St. Alban-Anlage 66 4052 Basel, Switzerland This is a reprint of articles from the Special Issue published online in the open access journal Nutrients (ISSN 2072-6643) (available at: https://www.mdpi.com/journal/nutrients/special issues/ Role Selenium Health Disease). For citation purposes, cite each article independently as indicated on the article page online and as indicated below: LastName, A.A.; LastName, B.B.; LastName, C.C. Article Title. Journal Name Year, Article Number, Page Range. ISBN 978-3-03936-146-5 (Hbk) ISBN 978-3-03936-147-2 (PDF) c 2020 by the authors. Articles in this book are Open Access and distributed under the Creative Commons Attribution (CC BY) license, which allows users to download, copy and build upon published articles, as long as the author and publisher are properly credited, which ensures maximum dissemination and a wider impact of our publications. The book as a whole is distributed by MDPI under the terms and conditions of the Creative Commons license CC BY-NC-ND. -
Exploring the Functional Roles of Π-Helices and Flavin-Induced Oligomeric State Changes in Flavin Reductases of Two-Component Monooxygenase Systems
Exploring the Functional Roles of π-helices and Flavin-Induced Oligomeric State Changes in Flavin Reductases of Two-Component Monooxygenase Systems by Jonathan Makau Musila A dissertation submitted to the Graduate Faculty of Auburn University in partial fulfillment of the requirements for the Degree of Doctor of Philosophy Auburn, Alabama May 6, 2017 Keywords: Oligomerization, kinetics, desulfonation, π-helix, dis(asso)ciation Copyright 2017 by Jonathan Makau Musila Approved by Holly R. Ellis, Chair, Professor of Chemistry and Biochemistry Douglas C. Goodwin, Associate Professor of Chemistry and Biochemistry Evert C. Duin, Associate Professor of Chemistry and Biochemistry Steven Mansoorabadi, Assistant Professor of Chemistry and Biochemistry Abstract Sulfur-containing biomolecules participate in various chemical and structural functions in enzymes. When sulfate is limiting, bacteria upregulate ssi enzymes to utilize organosulfonates as an alternative source. The alkanesulfonate monooxygenase enzymes mitigate sulfur scarcity through desulfonation of various alkanesulfonates releasing sulfite which is incorporated into sulfur-containing biomolecules. This two-component monooxygenase system utilizes flavin as a substrate with the SsuE enzyme supplying reduced flavin to SsuD. It is unclear what structural properties of flavin reductases of two-component systems dictate catalysis. The SsuE enzyme undergoes a tetramer to dimer oligomeric switch in the presence of FMN. Oligomeric state changes are common in flavin reductases but the roles and regulation of the quaternary structural changes have not been evaluated. Intriguingly, the flavin reductases of two-component systems contain π- helices located at the tetramer interface. π-Helices are generated by a single amino acid insertion in an established α-helix to confer an evolutionary advantage.