HIGHER CLASSIFICATION of COCCOLITHOPHORES Jeremy Young, Geology Dept, Imperial College, London SW7 2BP. INTRODUCTION: Provides A
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Coccolithophore Distribution in the Mediterranean Sea and Relate A
Discussion Paper | Discussion Paper | Discussion Paper | Discussion Paper | Ocean Sci. Discuss., 11, 613–653, 2014 Open Access www.ocean-sci-discuss.net/11/613/2014/ Ocean Science OSD doi:10.5194/osd-11-613-2014 Discussions © Author(s) 2014. CC Attribution 3.0 License. 11, 613–653, 2014 This discussion paper is/has been under review for the journal Ocean Science (OS). Coccolithophore Please refer to the corresponding final paper in OS if available. distribution in the Mediterranean Sea Is coccolithophore distribution in the A. M. Oviedo et al. Mediterranean Sea related to seawater carbonate chemistry? Title Page Abstract Introduction A. M. Oviedo1, P. Ziveri1,2, M. Álvarez3, and T. Tanhua4 Conclusions References 1Institute of Environmental Science and Technology (ICTA), Universitat Autonoma de Barcelona (UAB), 08193 Bellaterra, Spain Tables Figures 2Earth & Climate Cluster, Department of Earth Sciences, FALW, Vrije Universiteit Amsterdam, FALW, HV1081 Amsterdam, the Netherlands J I 3IEO – Instituto Espanol de Oceanografia, Apd. 130, A Coruna, 15001, Spain 4GEOMAR Helmholtz-Zentrum für Ozeanforschung Kiel, Marine Biogeochemistry, J I Duesternbrooker Weg 20, 24105 Kiel, Germany Back Close Received: 31 December 2013 – Accepted: 15 January 2014 – Published: 20 February 2014 Full Screen / Esc Correspondence to: A. M. Oviedo ([email protected]) Published by Copernicus Publications on behalf of the European Geosciences Union. Printer-friendly Version Interactive Discussion 613 Discussion Paper | Discussion Paper | Discussion Paper | Discussion Paper | Abstract OSD The Mediterranean Sea is considered a “hot-spot” for climate change, being char- acterized by oligotrophic to ultra-oligotrophic waters and rapidly changing carbonate 11, 613–653, 2014 chemistry. Coccolithophores are considered a dominant phytoplankton group in these 5 waters. -
Flow Cytometric Investigation of the Size Spectrum of North Sea Phytoplankton Communities
FLOW CYTOMETRIC INVESTIGATION OF THE SIZE SPECTRUM OF NORTH SEA PHYTOPLANKTON COMMUNITIES Katy R. Owen A thesis submitted to the School of Environmental Sciences, at the University of East Anglia, for the degree of Doctor of Philosophy, May 2014. © This copy of the thesis has been supplied on condition that anyone who consults it is understood to recognise that its copyright rests with the author and that use of any information derived there from must be in accordance with current UK Copyright Law. In addition, any quotation or extract must include full attribution. 2 ABSTRACT Marine biogeochemical processes are closely linked to phytoplankton community assemblages. Cell abundance and biomass are a measure of the successful conversion of inorganic to organic carbon. Carbon estimates are therefore often used to analyse metabolism and energy transfers within marine environments, and carbon is frequently the main parameter used in ecosystem models. Phytoplankton can be divided into functional types based on cell size: microplankton (<200 µm), nanoplankton (2-20 µm) and picoplankton (≤ 3 µm). Differences in cell volume govern variations in carbon content, nutrient uptake and influence cell fate. Reduced diameters equate to lower sedimentation rates and promote participation within the microbial loop and recycling of carbon within surface waters. Larger diameters can increase settling rates, resulting in the loss of carbon from surface waters. Current North Sea monitoring and research programmes typically only consider larger micro- and nanoplankton cells, or the bulk phytoplankton community as a whole: there is little separation by functional type. Inclusion of picoplankton and the delineation of biomass contribution by cell size are required for accurate depictions of phytoplankton productivity within this region, but this is not feasible with current water sampling protocols. -
Is Chloroplastic Class IIA Aldolase a Marine Enzyme&Quest;
The ISME Journal (2016) 10, 2767–2772 © 2016 International Society for Microbial Ecology All rights reserved 1751-7362/16 www.nature.com/ismej SHORT COMMUNICATION Is chloroplastic class IIA aldolase a marine enzyme? Hitoshi Miyasaka1, Takeru Ogata1, Satoshi Tanaka2, Takeshi Ohama3, Sanae Kano4, Fujiwara Kazuhiro4,7, Shuhei Hayashi1, Shinjiro Yamamoto1, Hiro Takahashi5, Hideyuki Matsuura6 and Kazumasa Hirata6 1Department of Applied Life Science, Sojo University, Kumamoto, Japan; 2The Kansai Electric Power Co., Environmental Research Center, Keihanna-Plaza, Kyoto, Japan; 3School of Environmental Science and Engineering, Kochi University of Technology, Kochi, Japan; 4Chugai Technos Corporation, Hiroshima, Japan; 5Graduate School of Horticulture, Faculty of Horticulture, Chiba University, Chiba, Japan and 6Environmental Biotechnology Laboratory, Graduate School of Pharmaceutical Sciences, Osaka University, Osaka, Japan Expressed sequence tag analyses revealed that two marine Chlorophyceae green algae, Chlamydo- monas sp. W80 and Chlamydomonas sp. HS5, contain genes coding for chloroplastic class IIA aldolase (fructose-1, 6-bisphosphate aldolase: FBA). These genes show robust monophyly with those of the marine Prasinophyceae algae genera Micromonas, Ostreococcus and Bathycoccus, indicating that the acquisition of this gene through horizontal gene transfer by an ancestor of the green algal lineage occurred prior to the divergence of the core chlorophytes (Chlorophyceae and Treboux- iophyceae) and the prasinophytes. The absence of this gene in some freshwater chlorophytes, such as Chlamydomonas reinhardtii, Volvox carteri, Chlorella vulgaris, Chlorella variabilis and Coccomyxa subellipsoidea, can therefore be explained by the loss of this gene somewhere in the evolutionary process. Our survey on the distribution of this gene in genomic and transcriptome databases suggests that this gene occurs almost exclusively in marine algae, with a few exceptions, and as such, we propose that chloroplastic class IIA FBA is a marine environment-adapted enzyme. -
Advances in MARINE BIOLOGY
Advances in MARINE BIOLOGY VOLUME 46 ThisPageIntentionallyLeftBlank Advances in MARINE BIOLOGY Edited by A. J. SOUTHWARD Marine Biological Association, The Laboratory, Citadel Hill, Plymouth, PL1 2PB, UK P. A. TYLER School of Ocean and Earth Science, University of Southampton, Southampton Oceanography Centre, European Way, Southampton, SO14 3ZH, UK C. M. YOUNG Oregon Institute of Marine Biology, University of Oregon P.O. Box 5389, Charleston, Oregon 97420, USA and L. A. FUIMAN Marine Science Institute, University of Texas at Austin, 750 Channel View Drive, Port Aransas, Texas 78373, USA Amsterdam – Boston – Heidelberg – London – New York – Oxford Paris – San Diego – San Francisco – Singapore – Sydney – Tokyo This book is printed on acid-free paper. ß 2003 Elsevier Science Ltd. All rights reserved. No part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopy, recording, or any information storage and retrieval system, without permission in writing from the Publisher. The appearance of the code at the bottom of the first page of a chapter in this book indicates the Publisher’s consent that copies of the chapter may be made for personal or internal use of specific clients. This consent is given on the condition, however, that the copier pay the stated per copy fee through the Copyright Clearance Center, Inc. (222 Rosewood Drive, Danvers, Massachusetts 01923), for copying beyond that permitted by Sections 107 or 108 of the U.S. Copyright Law. This consent does not extend to other kinds of copying, such as copying for general distribution, for advertising or promotional purposes, for creating new collective works, or for resale. -
The Coccolithophore Family Calciosoleniaceae with Report of A
The coccolithophore family Calciosoleniaceae with report of a new species: Calciosolenia subtropicus from the southern Indian Ocean Shramik Patil, Rahul Mohan, Syed Jafar, Sahina Gazi, Pallavi Choudhari, Xavier Crosta To cite this version: Shramik Patil, Rahul Mohan, Syed Jafar, Sahina Gazi, Pallavi Choudhari, et al.. The coccolithophore family Calciosoleniaceae with report of a new species: Calciosolenia subtropicus from the southern Indian Ocean. Micropaleontology, Micropaleontology Press, 2019. hal-02323185 HAL Id: hal-02323185 https://hal.archives-ouvertes.fr/hal-02323185 Submitted on 22 Oct 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. The coccolithophore family Calciosoleniaceae with report of a new species: Calciosolenia subtropicus from the southern Indian Ocean Shramik Patil1, Rahul Mohan1, Syed A. Jafar2, Sahina Gazi1, Pallavi Choudhari1 and Xavier Crosta3 1National Centre for Polar and Ocean Research (NCPOR), Headland Sada, Vasco-da-Gama, Goa-403804, India email: [email protected] 2Flat 5-B, Whispering Meadows, Haralur Road, Bangalore-560 102, India 3UMR-CNRS 5805 EPOC, Université de Bordeaux, Allée Geoffroy Saint Hilaire, 33615 Pessac Cedex, France ABSTRACT: The families Calciosoleniaceae, Syracosphaeraceae and Rhabdosphaeraceae belong to the order Syracosphaerales and constitute a significant component of extant coccolithophore species, sharing similar ultrastructural bauplans. -
Effects of Salinity on Diel Vertical Migration Behavior in Two Red-Tide Algae, Chattonella Antiqua and Karenia Mikimotoi
Plankton Benthos Res 9(1): 42–50, 2014 Plankton & Benthos Research © The Plankton Society of Japan Effects of salinity on diel vertical migration behavior in two red-tide algae, Chattonella antiqua and Karenia mikimotoi 1, 1 1 2 TOMOYUKI SHIKATA *, SETSUKO SAKAMOTO , GOH ONITSUKA , KAZUHIRO AOKI & 1 MINEO YAMAGUICHI 1 National Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research Agency, Maruishi 2–17–5, Hatsukaichi, Hiroshima 739–0452, Japan. 2 National Research Institute of Fisheries Science, Fisheries Research Agency, 2–12–4 Fukuura, Kanazawa, Yokohama, Kanagawa 236–8648, Japan. Received 17 May 2013; Accepted 4 December 2013 Abstract: We examined the effects of salinity on diel vertical migration (DVM) of two coastal flagellates, Chattonella antiqua and Karenia mikimotoi, in 90-cm-high columnar aquariums. Experiments were performed with surface sa- linities from 5 to 32 and bottom salinity constant at 32. Cells of each flagellate were injected into the bottom of the aquarium at night and the vertical distribution of cells was monitored every 4 h for 36 h in one series of experiments, or twice daily (day and night) for 5 days in another. Ascent and descent started at approximately the same time in all water columns, indicating that difference in surface salinity does not substantially affect DVM rhythm in the two flagellates. During daytime, C. antiqua and K. mikimotoi transited haloclines with surface salinities ≥15 and accumu- lated at the surface, although K. mikimotoi required 2 days to transit the halocline with surface salinity of 20 and 4 days for surface salinity of 15. However, neither flagellate could transit haloclines with surface salinities of 5 or 10; instead they accumulated in the halocline during daytime. -
Observations on Syracosphaera Rhombica Sp. Nov
Disponible en ligne sur ScienceDirect www.sciencedirect.com Revue de micropaléontologie 59 (2016) 233–237 Coccolithophores in modern oceans Observations on Syracosphaera rhombica sp. nov. Observations sur Syracosphaera rhombica sp. nov. a b c,∗ Harald Andruleit , Aisha Ejura Agbali , Richard W. Jordan a Bundesanstalt für Geowissenschaften und Rohstoffe (BGR), Stilleweg 2, 30655 Hannover, Germany b Earth, Ocean and Atmospheric Science, Florida State University, P.O. Box 3064520, Tallahassee, FL 32306-4520, USA c Department of Earth & Environmental Sciences, Faculty of Science, Yamagata University, 1-4-12 Kojirakawa-machi, Yamagata 990-8560, Japan Abstract A spherical coccosphere and two collapsed coccospheres composed of monomorphic rhombic coccoliths were encountered in 2005 in the Java upwelling system of the SE Indian Ocean, while a further two specimens with elongate coccospheres were recently found in the Gulf of Mexico. All of the specimens were collected from the lower photic zone (75–160 m). The coccoliths possess a proximal flange, a slightly flared wall with a serrated distal margin, and a relatively plain central area structure comprised only of overlapping laths. The taxon appears to be an undescribed species of the Syracosphaera nodosa group, so we describe it herein as Syracosphaera rhombica sp. nov. © 2016 Published by Elsevier Masson SAS. Keywords: Coccolithophorid; Gulf of Mexico; Indian Ocean; Lower photic zone; Syracosphaera Résumé Une coccosphère sphérique (ainsi que deux coccosphères effondrées) composée de coccolithes rhombiques monomorphiques a été rencontrée en 2005 dans le système de remontée d’eaux profondes de Java dans l’océan Indien du Sud-Est, tandis que deux autres spécimens avec coccosphères allongées ont été récemment trouvées dans le golfe du Mexique. -
Assessing the Role of Dust Deposition on Phytoplankton Ecophysiology
Discussion Paper | Discussion Paper | Discussion Paper | Discussion Paper | Biogeosciences Discuss., 9, 19199–19243, 2012 www.biogeosciences-discuss.net/9/19199/2012/ Biogeosciences doi:10.5194/bgd-9-19199-2012 Discussions BGD © Author(s) 2012. CC Attribution 3.0 License. 9, 19199–19243, 2012 This discussion paper is/has been under review for the journal Biogeosciences (BG). Assessing the role of Please refer to the corresponding final paper in BG if available. dust deposition on phytoplankton Assessing the role of dust deposition on ecophysiology phytoplankton ecophysiology and V. Giovagnetti et al. succession in a low-nutrient Title Page low-chlorophyll ecosystem: a mesocosm Abstract Introduction experiment in the Mediterranean Sea Conclusions References Tables Figures V. Giovagnetti1, C. Brunet1, F. Conversano1, F. Tramontano1, I. Obernosterer2,3, C. Ridame4, and C. Guieu5,6 J I 1Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy 2Universite´ Pierre et Marie Curie-Paris 6, UMR 7621, LOMIC, Observatoire Oceanologique,´ J I F-66650 Banyuls/Mer, France Back Close 3CNRS, UMR 7621, LOMIC, Observatoire Oceanologique,´ 66650 Banyuls/Mer, France 4Laboratoire d’Oceanographie´ et du Climat: Experimentations´ et Approches Numeriques´ Full Screen / Esc (LOCEAN), CNRS-Universite´ Paris VI, Campus Jussieu, Paris, France 5 Laboratoire d’Oceanographie´ de Villefranche/Mer, CNRS-INSU, UMR7093, Observatoire Printer-friendly Version Oceanologique,´ 06230, Villefranche/Mer, France 6 Universite´ Pierre et Marie Curie-Paris 6, UMR 7093, LOV, Observatoire Oceanologique,´ Interactive Discussion 06230, Villefranche/Mer, France 19199 Discussion Paper | Discussion Paper | Discussion Paper | Discussion Paper | Received: 30 November 2012 – Accepted: 5 December 2012 – Published: 21 December 2012 Correspondence to: C. Brunet ([email protected]) BGD Published by Copernicus Publications on behalf of the European Geosciences Union. -
Emerging Interaction Patterns in the Emiliania Huxleyi-Ehv System
viruses Article Emerging Interaction Patterns in the Emiliania huxleyi-EhV System Eliana Ruiz 1,*, Monique Oosterhof 1,2, Ruth-Anne Sandaa 1, Aud Larsen 1,3 and António Pagarete 1 1 Department of Biology, University of Bergen, Bergen 5006, Norway; [email protected] (R.-A.S.); [email protected] (A.P.) 2 NRL for fish, Shellfish and Crustacean Diseases, Central Veterinary Institute of Wageningen UR, Lelystad 8221 RA, The Nederlands; [email protected] 3 Uni Research Environment, Nygårdsgaten 112, Bergen 5008, Norway; [email protected] * Correspondence: [email protected]; Tel.: +47-5558-8194 Academic Editors: Mathias Middelboe and Corina Brussaard Received: 30 January 2017; Accepted: 16 March 2017; Published: 22 March 2017 Abstract: Viruses are thought to be fundamental in driving microbial diversity in the oceanic planktonic realm. That role and associated emerging infection patterns remain particularly elusive for eukaryotic phytoplankton and their viruses. Here we used a vast number of strains from the model system Emiliania huxleyi/Emiliania huxleyi Virus to quantify parameters such as growth rate (µ), resistance (R), and viral production (Vp) capacities. Algal and viral abundances were monitored by flow cytometry during 72-h incubation experiments. The results pointed out higher viral production capacity in generalist EhV strains, and the virus-host infection network showed a strong co-evolution pattern between E. huxleyi and EhV populations. The existence of a trade-off between resistance and growth capacities was not confirmed. Keywords: Phycodnaviridae; Coccolithovirus; Coccolithophore; Haptophyta; Killing-the-winner; cost of resistance; infectivity trade-offs; algae virus; marine viral ecology; viral-host interactions 1. -
Mixotrophy Among Dinoflagellates1
J Eukaryn Microbiol.. 46(4). 1999 pp. 397-401 0 1999 by the Society of Protozoologists Mixotrophy among Dinoflagellates’ DIANE K. STOECKER University of Maryland Center for Environmentul Science, Horn Point Laboratory, P.O. Box 775, Cambridge, Marylund 21613, USA ABSTRACT. Mixotrophy, used herein for the combination of phototrophy and phagotrophy, is widespread among dinoflagellates. It occurs among most, perhaps all, of the extant orders, including the Prorocentrales, Dinophysiales, Gymnodiniales, Noctilucales, Gon- yaulacales, Peridiniales, Blastodiniales, Phytodiniales, and Dinamoebales. Many cases of mixotrophy among dinoflagellates are probably undocumented. Primarily photosynthetic dinoflagellates with their “own” plastids can often supplement their nutrition by preying on other cells. Some primarily phagotrophic species are photosynthetic due to the presence of kleptochloroplasts or algal endosymbionts. Some parasitic dinoflagellates have plastids and are probably mixotrophic. For most mixotrophic dinoflagellates, the relative importance of photosynthesis, uptake of dissolved inorganic nutrients, and feeding are unknown. However, it is apparent that mixotrophy has different functions in different physiological types of dinoflagellates. Data on the simultaneous regulation of photosynthesis, assimilation of dissolved inorganic and organic nutrients, and phagotophy by environmental parameters (irradiance, availablity of dissolved nutrients, availability of prey) and by life history events are needed in order to understand the diverse -
Living Coccolithophores from the Eastern Equatorial Indian Ocean During the Spring Intermonsoon: Indicators of Hydrography
Living coccolithophores from the eastern equatorial Indian Ocean during the spring intermonsoon: Indicators of hydrography *Jun Sun 1, 2,3, Haijiao Liu 1,2,3, Xiaodong Zhang2,3, Cuixia Zhang2,3, Shuqun Song4 1 Institute of Marine Science and Technology, Shandong University, 27 Shanda Nan Road, Jinan 250110, PR China 2 Tianjin Key Laboratory of Marine Resources and Chemistry, Tianjin University of Science and Technology, Tianjin 300457, PR China 3 College of Marine and Environmental Sciences, Tianjin University of Science and Technology, Tianjin 300457, PR China 4 CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, PR China *Correspondence to: Jun Sun ([email protected]) Abstract. We studied the biodiversity of autotrophic calcareous coccolithophore assemblages at 30 locations in the eastern equatorial Indian Ocean (EEIO) (80°-94°E, 6°N-5°S) and evaluated the importance of regional hydrology. We found 25 taxa of coccospheres and 17 taxa of coccoliths. The coccolithophore community was dominated by Gephyrocapsa oceanica, Emiliania huxleyi, Florisphaera profunda, Umbilicosphaera sibogae, and Helicosphaera carteri. The abundance of coccoliths and coccospheres ranged from 0.192×103 to 161.709×103 coccoliths l-1 and 0.192 ×103 to 68.365×103 cells l-1, averaged at 22.658×103 coccoliths l-1 and 9.386×103 cells l-1, respectively. Biogenic PIC, POC, and rain ratio mean values were 0.498 μgC l-1, 1.047 μgC l-1, and 0.990 respectively. High abundances of both coccoliths and coccospheres in the surface ocean layer occurred north of the equator. -
Surface Seawater Plankton Sampling for Coccolithophores Undertaken During IODP Expedition 359
Betzler, C., Eberli, G.P., Alvarez Zarikian, C.A., and the Expedition 359 Scientists Proceedings of the International Ocean Discovery Program Volume 359 publications.iodp.org doi:10.14379/iodp.proc.359.111.2017 Contents 1 Abstract Data report: surface seawater plankton 1 Introduction sampling for coccolithophores undertaken 1 Materials and methods 3 Results 1 during IODP Expedition 359 5 Biogeography 6 Acknowledgments Jeremy R. Young, Santi Pratiwi, Xiang Su, and the Expedition 359 Scientists2 6 References 7 Appendix Keywords: International Ocean Discovery Program, IODP, JOIDES Resolution, Expedition 359, Indian Ocean transect, Maldives, coccolithophores Abstract Darwin, Australia, to the Maldives (Figure F1A). This transit pre- sented a valuable opportunity to sample the equatorial assemblages Data on extant coccolithophore assemblages from plankton to determine broad patterns of coccolithophore distribution and samples collected during International Ocean Discovery Program compare them with those recorded previously, notably by Kleijne et Expedition 359 to the Maldives is presented. Samples include 12 al. (1989). Sampling continued within the Maldives drilling area to collected during passage across the Indian Ocean from Darwin, (1) determine whether assemblages within the Maldives show evi- Australia, to the Maldives and 40 collected in the Maldives. Assem- dence of ecological restriction or modified assemblages related to blages were analyzed by light and scanning electron microscopy, the particular environment of the atoll chain, (2) investigate repro- and detailed assemblage data are presented. Comparison with pre- ducibility of assemblage data by repeat sampling within a limited vious data from the region suggests that there are consistent distinc- area over an extended period, and (3) investigate the potential of the tive aspects to Indian Ocean assemblages.