Coccolithophore Distribution in the Mediterranean Sea and Relate A
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Pliocene-Pleistocene Calcareous Nannofossil Biostratigraphy of Iodp
Florida State University Libraries Electronic Theses, Treatises and Dissertations The Graduate School 2013 Pliocene-Pleistocene Calcareous Nannofossil Biostratigraphy of IODP Hole 1396C Adjacent to Montserrat Island in the Lesser Antilles, Caribbean Sea, Plus Experimentally Induced Diagenesis Mohammed H. Aljahdali Follow this and additional works at the FSU Digital Library. For more information, please contact [email protected] THE FLORIDA STATE UNIVERSITY COLLEGE OF ARTS AND SCIENCES PLIOCENE-PLEISTOCENE CALCAREOUS NANNOFOSSIL BIOSTRATIGRAPHY OF IODP HOLE 1396C ADJACENT TO MONTSERRAT ISLAND IN THE LESSER ANTILLES, CARIBBEAN SEA, PLUS EXPERIMENTALLY INDUCED DIAGENESIS By MOHAMMED H. ALJAHDALI A Thesis submitted to the Department of Earth, Ocean and Atmospheric Sciences in partial fulfillment of the requirements for the Degree of Master of Science Degree Awarded: Spring Semester 2013 Mohammed H. Aljahdali defended this thesis on March 27, 2013. The members of the supervisory committee were: Sherwood W. Wise, Jr. Professor Directing Thesis Yang Wang Committee Member William Parker Committee Member The Graduate School has verified and approved the above-named committee members, and certifies that this thesis has been approved in accordance with university requirements. ii Dedicated To my family whose support has made this project possible. iii ACKNOWLEDGMENTS First of all, I would like to thank and express my gratitude to my major advisor Professor Sherwood “Woody” Wise for his encouragement and suggestion that made this work valuable. Woody introduced me to the Nannofossil micropaleontology field back in 2010 when I was looking for an advisor to work within the foraminifera field. I took classes in his lab with almost no idea about what nannofossils were. -
University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
An Explanation for the 18O Excess in Noelaerhabdaceae Coccolith Calcite
Available online at www.sciencedirect.com ScienceDirect Geochimica et Cosmochimica Acta 189 (2016) 132–142 www.elsevier.com/locate/gca An explanation for the 18O excess in Noelaerhabdaceae coccolith calcite M. Hermoso a,⇑, F. Minoletti b,c, G. Aloisi d,e, M. Bonifacie f, H.L.O. McClelland a,1, N. Labourdette b,c, P. Renforth g, C. Chaduteau f, R.E.M. Rickaby a a University of Oxford – Department of Earth Sciences, South Parks Road, Oxford OX1 3AN, United Kingdom b Sorbonne Universite´s, UPMC Universite´ Paris 06 – Institut de Sciences de la Terre de Paris (ISTeP), 4 Place Jussieu, 75252 Paris Cedex 05, France c CNRS – UMR 7193 ISTeP, 4 Place Jussieu, 75252 Paris Cedex 05, France d Sorbonne Universite´s, UPMC Universite´ Paris 06 – UMR 7159 LOCEAN, 4 Place Jussieu, 75005 Paris, France e CNRS – UMR 7159 LOCEAN, 4 Place Jussieu, 75005 Paris, France f Institut de Physique du Globe de Paris, Sorbonne Paris Cite´, Universite´ Paris-Diderot, UMR CNRS 7154, 1 rue Jussieu, 75238 Paris Cedex, France g Cardiff University – School of Earth and Ocean Sciences, Parks Place, Cardiff CF10 3AT, United Kingdom Received 10 November 2015; accepted in revised form 11 June 2016; available online 18 June 2016 Abstract Coccoliths have dominated the sedimentary archive in the pelagic environment since the Jurassic. The biominerals pro- duced by the coccolithophores are ideally placed to infer sea surface temperatures from their oxygen isotopic composition, as calcification in this photosynthetic algal group only occurs in the sunlit surface waters. In the present study, we dissect the isotopic mechanisms contributing to the ‘‘vital effect”, which overprints the oceanic temperatures recorded in coccolith calcite. -
The Coccolithophore Family Calciosoleniaceae with Report of A
The coccolithophore family Calciosoleniaceae with report of a new species: Calciosolenia subtropicus from the southern Indian Ocean Shramik Patil, Rahul Mohan, Syed Jafar, Sahina Gazi, Pallavi Choudhari, Xavier Crosta To cite this version: Shramik Patil, Rahul Mohan, Syed Jafar, Sahina Gazi, Pallavi Choudhari, et al.. The coccolithophore family Calciosoleniaceae with report of a new species: Calciosolenia subtropicus from the southern Indian Ocean. Micropaleontology, Micropaleontology Press, 2019. hal-02323185 HAL Id: hal-02323185 https://hal.archives-ouvertes.fr/hal-02323185 Submitted on 22 Oct 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. The coccolithophore family Calciosoleniaceae with report of a new species: Calciosolenia subtropicus from the southern Indian Ocean Shramik Patil1, Rahul Mohan1, Syed A. Jafar2, Sahina Gazi1, Pallavi Choudhari1 and Xavier Crosta3 1National Centre for Polar and Ocean Research (NCPOR), Headland Sada, Vasco-da-Gama, Goa-403804, India email: [email protected] 2Flat 5-B, Whispering Meadows, Haralur Road, Bangalore-560 102, India 3UMR-CNRS 5805 EPOC, Université de Bordeaux, Allée Geoffroy Saint Hilaire, 33615 Pessac Cedex, France ABSTRACT: The families Calciosoleniaceae, Syracosphaeraceae and Rhabdosphaeraceae belong to the order Syracosphaerales and constitute a significant component of extant coccolithophore species, sharing similar ultrastructural bauplans. -
Is Coccolithophore Distribution in the Mediterranean Sea Related to Seawater Carbonate Chemistry? A
Discussion Paper | Discussion Paper | Discussion Paper | Discussion Paper | Ocean Sci. Discuss., 11, 613–653, 2014 Open Access www.ocean-sci-discuss.net/11/613/2014/ Ocean Science doi:10.5194/osd-11-613-2014 Discussions © Author(s) 2014. CC Attribution 3.0 License. This discussion paper is/has been under review for the journal Ocean Science (OS). Please refer to the corresponding final paper in OS if available. Is coccolithophore distribution in the Mediterranean Sea related to seawater carbonate chemistry? A. M. Oviedo1, P. Ziveri1,2, M. Álvarez3, and T. Tanhua4 1Institute of Environmental Science and Technology (ICTA), Universitat Autonoma de Barcelona (UAB), 08193 Bellaterra, Spain 2Earth & Climate Cluster, Department of Earth Sciences, FALW, Vrije Universiteit Amsterdam, FALW, HV1081 Amsterdam, the Netherlands 3IEO – Instituto Espanol de Oceanografia, Apd. 130, A Coruna, 15001, Spain 4GEOMAR Helmholtz-Zentrum für Ozeanforschung Kiel, Marine Biogeochemistry, Duesternbrooker Weg 20, 24105 Kiel, Germany Received: 31 December 2013 – Accepted: 15 January 2014 – Published: 20 February 2014 Correspondence to: A. M. Oviedo ([email protected]) Published by Copernicus Publications on behalf of the European Geosciences Union. 613 Discussion Paper | Discussion Paper | Discussion Paper | Discussion Paper | Abstract The Mediterranean Sea is considered a “hot-spot” for climate change, being char- acterized by oligotrophic to ultra-oligotrophic waters and rapidly changing carbonate chemistry. Coccolithophores are considered a dominant phytoplankton group in these 5 waters. As a marine calcifying organism they are expected to respond to the ongo- ing changes in seawater CO2 systems parameters. However, very few studies have covered the entire Mediterranean physiochemical gradients from the Strait of Gibral- tar to the Eastern Mediterranean Levantine Basin. -
Phytobase: a Global Synthesis of Open-Ocean Phytoplankton Occurrences
Research Collection Journal Article PhytoBase: A global synthesis of open-ocean phytoplankton occurrences Author(s): Righetti, Damiano; Vogt, Meike; Zimmermann, Niklaus E.; Guiry, Michael D.; Gruber, Nicolas Publication Date: 2020 Permanent Link: https://doi.org/10.3929/ethz-b-000414680 Originally published in: Earth System Science Data 12(2), http://doi.org/10.5194/essd-12-907-2020 Rights / License: Creative Commons Attribution 4.0 International This page was generated automatically upon download from the ETH Zurich Research Collection. For more information please consult the Terms of use. ETH Library Earth Syst. Sci. Data, 12, 907–933, 2020 https://doi.org/10.5194/essd-12-907-2020 © Author(s) 2020. This work is distributed under the Creative Commons Attribution 4.0 License. PhytoBase: A global synthesis of open-ocean phytoplankton occurrences Damiano Righetti1, Meike Vogt1, Niklaus E. Zimmermann2, Michael D. Guiry3, and Nicolas Gruber1 1Environmental Physics, Institute of Biogeochemistry and Pollutant Dynamics, ETH Zürich, Universitätstrasse 16, 8092 Zürich, Switzerland 2Dynamic Macroecology, Landscape Dynamics, Swiss Federal Research Institute WSL, 8903 Birmensdorf, Switzerland 3AlgaeBase, Ryan Institute, NUI, Galway, University Road, Galway H91 TK33, Ireland Correspondence: Damiano Righetti ([email protected]) Received: 3 September 2019 – Discussion started: 14 October 2019 Revised: 24 February 2020 – Accepted: 11 March 2020 – Published: 24 April 2020 Abstract. Marine phytoplankton are responsible for half of the global net primary production and perform mul- tiple other ecological functions and services of the global ocean. These photosynthetic organisms comprise more than 4300 marine species, but their biogeographic patterns and the resulting species diversity are poorly known, mostly owing to severe data limitations. -
The Ecology and Glycobiology of Prymnesium Parvum
The Ecology and Glycobiology of Prymnesium parvum Ben Adam Wagstaff This thesis is submitted in fulfilment of the requirements of the degree of Doctor of Philosophy at the University of East Anglia Department of Biological Chemistry John Innes Centre Norwich September 2017 ©This copy of the thesis has been supplied on condition that anyone who consults it is understood to recognise that its copyright rests with the author and that use of any information derived there from must be in accordance with current UK Copyright Law. In addition, any quotation or extract must include full attribution. Page | 1 Abstract Prymnesium parvum is a toxin-producing haptophyte that causes harmful algal blooms (HABs) globally, leading to large scale fish kills that have severe ecological and economic implications. A HAB on the Norfolk Broads, U.K, in 2015 caused the deaths of thousands of fish. Using optical microscopy and 16S rRNA gene sequencing of water samples, P. parvum was shown to dominate the microbial community during the fish-kill. Using liquid chromatography-mass spectrometry (LC-MS), the ladder-frame polyether prymnesin-B1 was detected in natural water samples for the first time. Furthermore, prymnesin-B1 was detected in the gill tissue of a deceased pike (Exos lucius) taken from the site of the bloom; clearing up literature doubt on the biologically relevant toxins and their targets. Using microscopy, natural P. parvum populations from Hickling Broad were shown to be infected by a virus during the fish-kill. A new species of lytic virus that infects P. parvum was subsequently isolated, Prymnesium parvum DNA virus (PpDNAV-BW1). -
A 15 Million-Year Long Record of Phenotypic Evolution in the Heavily Calcified Coccolithophore Helicosphaera and Its Biogeochemical Implications
A 15 million-year long record of phenotypic evolution in the heavily calcified coccolithophore Helicosphaera and its biogeochemical implications 5 Luka Šupraha1, a, Jorijntje Henderiks1, 2 1 Department of Earth Sciences, Uppsala University, Villavägen 16, SE-752 36 Uppsala, Sweden. 2 Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, P.O. Box 1066 Blindern, 0316 Oslo, Norway. a Present address: Section for Aquatic Biology and Toxicology (AQUA), Department of Biosciences, University of Oslo, P.O. 10 Box 1066 Blindern, 0316 Oslo, Norway Correspondence to: Luka Šupraha ([email protected]) Abstract. The biogeochemical impact of coccolithophores is defined by their overall abundance in the oceans, but also by a wide range in physiological traits such as cell size, degree of calcification and carbon production rates between different species. Species’ “sensitivity” to environmental forcing has been suggested to relate to their cellular PIC:POC ratio and other 15 physiological constraints. Understanding both the short and longer-term adaptive strategies of different coccolithophore lineages, and how these in turn shape the biogeochemical role of the group, is therefore crucial for modeling the ongoing changes in the global carbon cycle. Here we present data on the phenotypic evolution of a large and heavily-calcified genus Helicosphaera (order Zygodiscales) over the past 15 million years (Ma), at two deep-sea drill sites from the tropical Indian Ocean and temperate South Atlantic. The modern species Helicosphaera carteri, which displays eco-physiological adaptations 20 in modern strains, was used to benchmark the use of its coccolith morphology as a physiological proxy in the fossil record. -
On the Ultrastructure of Gephyrocapsa Oceanica (Haptophyta) Life Stages
Cryptogamie, Algologie, 2014, 35 (4): 379-388 © 2014 Adac. Tous droits réservés On the ultrastructure of Gephyrocapsa oceanica (Haptophyta) life stages El Mahdi BENDIFa* & Jeremy YOUNGb aMarine Biological Association of the UK, Plymouth, UK bDepartment of Earth Sciences, University College, London, UK Résumé – Gephyrocapsa oceanica est une espèce cosmopolite de coccolithophores appar- tenant à la famille des Noëlaerhabdaceae dans l’ordre des Isochrysidales. Exclusivement pélagique, G. oceanica est fréquemment retrouvée dans les océans modernes ainsi que dans les sédiments fossiles. Aussi, elle est apparentée à Emiliania huxleyi chez qui un cycle haplodiplobiontique a été décrit, avec un stade diploïde ou les cellules sont immobiles et ornées de coccolithes, qui alterne avec un stade haploïde ou les cellules sont mobiles et ornées d’écailles organiques. Alors que la cytologie et l’ultrastructure des autres membres des Noëlaerhabdaceae n’ont jamais été étudié, ces caractères peuvent être uniques au genre Emiliania ou communs à la famille. Dans cette étude, nous présentons pour la première fois l’ultrastructure des stades non-calcifiants mobiles et calcifiants immobile de G. oceanica. Nous n’avons pas retrouvé de différences ultrastructurales significatives entre ces deux morpho-espèces apparentées au niveau des stades diploïdes et haploïdes. Les similarités entre ces deux morpho-espèces démontrent une importante conservation des caractères cytologiques. Par ailleurs, nous avons discuté de la vraisemblance de ces résultats en rapport au contexte évolutif des Noelaerhabdaceae. Calcification / coccolithophores / Gephyrocapsa oceanica / cycle de vie / microscopie électronique à transmission / ultrastructure Abstract – Gephyrocapsa oceanica is a cosmopolitan bloom-forming coccolithophore species belonging to the haptophyte order Isochrysidales and family Noëlaerhabdaceae. -
Protista (PDF)
1 = Astasiopsis distortum (Dujardin,1841) Bütschli,1885 South Scandinavian Marine Protoctista ? Dingensia Patterson & Zölffel,1992, in Patterson & Larsen (™ Heteromita angusta Dujardin,1841) Provisional Check-list compiled at the Tjärnö Marine Biological * Taxon incertae sedis. Very similar to Cryptaulax Skuja Laboratory by: Dinomonas Kent,1880 TJÄRNÖLAB. / Hans G. Hansson - 1991-07 - 1997-04-02 * Taxon incertae sedis. Species found in South Scandinavia, as well as from neighbouring areas, chiefly the British Isles, have been considered, as some of them may show to have a slightly more northern distribution, than what is known today. However, species with a typical Lusitanian distribution, with their northern Diphylleia Massart,1920 distribution limit around France or Southern British Isles, have as a rule been omitted here, albeit a few species with probable norhern limits around * Marine? Incertae sedis. the British Isles are listed here until distribution patterns are better known. The compiler would be very grateful for every correction of presumptive lapses and omittances an initiated reader could make. Diplocalium Grassé & Deflandre,1952 (™ Bicosoeca inopinatum ??,1???) * Marine? Incertae sedis. Denotations: (™) = Genotype @ = Associated to * = General note Diplomita Fromentel,1874 (™ Diplomita insignis Fromentel,1874) P.S. This list is a very unfinished manuscript. Chiefly flagellated organisms have yet been considered. This * Marine? Incertae sedis. provisional PDF-file is so far only published as an Intranet file within TMBL:s domain. Diplonema Griessmann,1913, non Berendt,1845 (Diptera), nec Greene,1857 (Coel.) = Isonema ??,1???, non Meek & Worthen,1865 (Mollusca), nec Maas,1909 (Coel.) PROTOCTISTA = Flagellamonas Skvortzow,19?? = Lackeymonas Skvortzow,19?? = Lowymonas Skvortzow,19?? = Milaneziamonas Skvortzow,19?? = Spira Skvortzow,19?? = Teixeiromonas Skvortzow,19?? = PROTISTA = Kolbeana Skvortzow,19?? * Genus incertae sedis. -
1 Coccolithophore Cell Biology: Chalking up Progress 1 2 Authors: 3
1 Coccolithophore cell biology: chalking up progress 2 3 Authors: 4 *Alison R. Taylor ([email protected]) 5 Department of Biology and Marine Biology, University of North Carolina 6 Wilmington, North Carolina, 28403, USA 7 8 Colin Brownlee ([email protected]) 9 The Marine Biological Association, The Laboratory, Citadel Hill, Plymouth, PL1 2PB, 10 UK. 11 and 12 School of Ocean and Earth Sciences, University of Southampton, National 13 Oceanography Centre, Southampton SO14 3ZH, UK. 14 15 Glen Wheeler ([email protected]) 16 The Marine Biological Association, The Laboratory, Citadel Hill, Plymouth, PL12PB, 17 UK 18 19 *author for correspondence 20 21 22 23 Keywords: Calcification, dimethylsulfoniopropionate, Emiliania, haptophyte, 24 mixotrophy, vesicle, virus. 25 26 1 1 Table of Contents 2 1.0 Introduction to coccolithophores 3 2.0 Evolution of coccolithophores 4 3.0 Cell biology, lifecycle and ecological niches 5 3.1 Life cycle transitions 6 3.2 Mixotrophy 7 4.0 Biotic interactions 8 4.1 Bacteria 9 4.2 Viruses 10 5.0 Coccolithophore metabolism and physiological diversity 11 5.1 Carbon metabolism 12 5.2 Osmoprotectants 13 6.0 Recent insights into functional roles of calcification 14 6.1 Defense from pathogens and grazers 15 6.2 Modulation of diffusion boundary layer 16 6.3 Modulating the light field and energy balance 17 7.0 Opening the ‘black box’ of vital effects in coccolithophores 18 8.0 Calcification mechanism 19 8.1 Ultrastructure and role of intracellular membranes 20 8.2 Role of organic components in calcification 21 8.2.1 Coccolith associated polysaccharide 22 8.2.2 Coccolith associated proteins 23 8.3 Ion transport 24 8.4 The problem of protons 25 8.5 New paradigms for calcification 26 9.0 Coccolithophore distribution, diversity and adaptation 27 10.0 Concluding remarks 28 2 1 Abstract 2 Coccolithophores occupy a special position within the marine phytoplankton due to 3 their production of intricate calcite scales, or coccoliths. -
Extant Rhabdosphaeraceae (Coccolitho- Phorids, Class Prymnesiophyceae) from the Indian Ocean, Red Sea, Mediterranean Sea and North Atlantic Ocean
Kleijne, Extant Rhabdosphaeraceae (coccolithophorids), Scripta Geol., 100 (1992) 1 Extant Rhabdosphaeraceae (coccolitho- phorids, class Prymnesiophyceae) from the Indian Ocean, Red Sea, Mediterranean Sea and North Atlantic Ocean Annelies Kleijne Kleijne, A. Extant Rhabdosphaeraceae (coccolithophorids, class Prymnesiophyceae) from the Indian Ocean, Red Sea, Mediterranean Sea and North Atlantic Ocean. — Scripta Geol., 100: 1-63, 5 figs., 8 pls. Leiden, September 1992. Rhabdosphaerids were consistently present as a minor constituent of the 1985 summer coccolithophorid flora in surface waters of the Indian Ocean, Red Sea, Mediterranean Sea and North Atlantic. Sixteen taxa are identified, belonging to seven genera, includ- ing the two new combinations Cyrtosphaera aculeata and C. cucullata and the new species C. lecaliae sp. nov. of Cyrtosphaera gen. nov., and the new combination Anacanthoica cidaris. An emended description is given for the genus Acanthoica, of which the new species A. biscayensis and a type in open nomenclature are described. All species are illustrated by SEM-micrographs and their occurrences are mapped. The most frequently occurring species were Palusphaera vandeli, present in low numbers along the entire sampling transect, Discosphaera tubifera in the warm oligotrophic water of the Red Sea, Rhabdosphaera clavigera in the somewhat colder water of the Mediterranean Sea, and Algirosphaera robusta in the Indian Ocean, indicative for upwelling conditions. Annelies Kleijne, Geomarine Center, Institute for Earth Sciences, Vrije