THE Sequestrate SPECIES
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Gymnomyces Xerophilus Sp. Nov. (Sequestrate Russulaceae), an Ectomycorrhizal Associate of Quercus in California
MYCOLOGICAL RESEARCH I I0 (2006) 57 5-582 Gymnomyces xerophilus sp. nov. (sequestrate Russulaceae), an ectomycorrhizal associate of Quercus in California Matthew E. SMITHa1*,James M. TRAPPE~,Dauid M. RIZZOa, Steven I. MILLERC 'Department of Plant Pathology, University of California at Davis, Davis CA 95616, USA b~epartmentof Forest Science, Oregon State University, Camallis, OR 97331-5752, USA CDeparhnentof Botany, University of Wyoming, Laramie, WY 82071, USA ARTICLE INFO ABSTRACT Article history: Gymnomyces xerophilus sp. nov., a sequestrate species in the Russulaceae, is characterized Received 30 August 2005 and descn'bed morphologically as a new species from Quercus-dominated woodlands in Accepted 14 February 2006 California. ITS sequences recovered from healthy, ectomycorrhizal roots of Quercus dougla- Corresponding Editor: Michael Weiss sii and Q. wislizeni matched those of G. xerophfius basidiomata, confirming the ectomycor- -- rhizal status of this fungus. Phylogenetic analysis of the ITS region places G. xerophilus in Keywords: a clade with both agaricoid (Russula in the section Polychromae) and sequestrate (Gymno- Basidiomycota myces, Cystangium) relatives. We include a dichotomous key to the species of Gymnomyces Hypogeous fungi associated with Quercus. ITS O 2006 The British Mycological Society. Published by Elsevier Ltd. All rights reserved. Molecular phylogeny Russula Introduction mycelium, potentially reducing drought stress (Duddridge et al. 1980; Parke et al. 1983). Quercus-dominated ecosystems cover about one third of dali- Although the EM fungi associated with Quercus in California fornia's 404,000bm2(Pavlik et al. 1991). Quercus spp. are well have not been studied extensively, Thiers (1984) and Trappe adapted to the state's extensive areas of dry, Mediterranean and Claridge (2005) suggest that seasonally dry climates exert climate, with at least 7 species considered endemic (Nixon a selection pressure towards a sequestrate fruiting habit in 2002). -
Boletus Edulis and Cistus Ladanifer: Characterization of Its Ectomycorrhizae, in Vitro Synthesis, and Realised Niche
UNIVERSIDAD DE MURCIA ESCUELA INTERNACIONAL DE DOCTORADO Boletus edulis and Cistus ladanifer: characterization of its ectomycorrhizae, in vitro synthesis, and realised niche. Boletus edulis y Cistus ladanifer: caracterización de sus ectomicorrizas, síntesis in vitro y área potencial. Dª. Beatriz Águeda Hernández 2014 UNIVERSIDAD DE MURCIA ESCUELA INTERNACIONAL DE DOCTORADO Boletus edulis AND Cistus ladanifer: CHARACTERIZATION OF ITS ECTOMYCORRHIZAE, in vitro SYNTHESIS, AND REALISED NICHE tesis doctoral BEATRIZ ÁGUEDA HERNÁNDEZ Memoria presentada para la obtención del grado de Doctor por la Universidad de Murcia: Dra. Luz Marina Fernández Toirán Directora, Universidad de Valladolid Dra. Asunción Morte Gómez Tutora, Universidad de Murcia 2014 Dª. Luz Marina Fernández Toirán, Profesora Contratada Doctora de la Universidad de Valladolid, como Directora, y Dª. Asunción Morte Gómez, Profesora Titular de la Universidad de Murcia, como Tutora, AUTORIZAN: La presentación de la Tesis Doctoral titulada: ‘Boletus edulis and Cistus ladanifer: characterization of its ectomycorrhizae, in vitro synthesis, and realised niche’, realizada por Dª Beatriz Águeda Hernández, bajo nuestra inmediata dirección y supervisión, y que presenta para la obtención del grado de Doctor por la Universidad de Murcia. En Murcia, a 31 de julio de 2014 Dra. Luz Marina Fernández Toirán Dra. Asunción Morte Gómez Área de Botánica. Departamento de Biología Vegetal Campus Universitario de Espinardo. 30100 Murcia T. 868 887 007 – www.um.es/web/biologia-vegetal Not everything that can be counted counts, and not everything that counts can be counted. Albert Einstein Le petit prince, alors, ne put contenir son admiration: -Que vous êtes belle! -N´est-ce pas, répondit doucement la fleur. Et je suis née meme temps que le soleil.. -
Chapter 1. Introduction
Chapter 1: Introduction Chapter 1. Introduction Research and ecological context Importance of the mutualistic symbiosis Truffle-like fungi are an important component in many terrestrial ecosystems. They provide a food resource for mycophagous (‘fungus-eating’) animals and are an essential symbiont for many plant species (Claridge 2002; Brundrett 2009). Most truffle-like fungi are considered ectomycorrhizal (EcM) in which the fungus hyphae penetrate the plant root structure and form a sheath (‘Hartig Net’) around plant root tips. This enables the exchange of water, minerals, and metabolites between fungus and plant (Nehls et al. 2010). The fungus can form extensive networks of mycelium in the soil extending the effective surface of the plant-host root system. EcM fungi can also confer resistance to parasites, predators, pathogens, and heavy-metal pollution, as well as the breakdown of inorganic substrates (Claridge 2002; Gadd 2007; Bonfante & Genre 2010). EcM fungi can reproduce through mycelia (vegetative) growth or through spores. Truffle-like EcM fungi form reproductive below-ground (hypogeous) fruit-bodies (sporocarps) in which spores are entirely or partly enclosed within fungal tissue of the sporocarp (‘sequestrate’), and often referred to as ‘truffles’. The sporocarps of these fungi (‘truffles’) generally require excavation and consumption by mycophagous mammals for spores to be liberated and dispersed to new locations (Johnson 1996; Bougher & Lebel 2001). In contrast, epigeous or ‘mushroom-like’ fungi produce stipitate above-ground sporocarps in which spores are not enclosed within fungal tissue and are actively or passively discharged into the surrounding environment. Consequently, truffle-like taxa are considered to have evolved to be reliant on mycophagous animals for their dispersal. -
Angiocarpous Representatives of the Russulaceae in Tropical South East Asia
Persoonia 32, 2014: 13–24 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158514X679119 Tales of the unexpected: angiocarpous representatives of the Russulaceae in tropical South East Asia A. Verbeken1, D. Stubbe1,2, K. van de Putte1, U. Eberhardt³, J. Nuytinck1,4 Key words Abstract Six new sequestrate Lactarius species are described from tropical forests in South East Asia. Extensive macro- and microscopical descriptions and illustrations of the main anatomical features are provided. Similarities Arcangeliella with other sequestrate Russulales and their phylogenetic relationships are discussed. The placement of the species gasteroid fungi within Lactarius and its subgenera is confirmed by a molecular phylogeny based on ITS, LSU and rpb2 markers. hypogeous fungi A species key of the new taxa, including five other known angiocarpous species from South East Asia reported to Lactarius exude milk, is given. The diversity of angiocarpous fungi in tropical areas is considered underestimated and driving Martellia evolutionary forces towards gasteromycetization are probably more diverse than generally assumed. The discovery morphology of a large diversity of angiocarpous milkcaps on a rather local tropical scale was unexpected, and especially the phylogeny fact that in Sri Lanka more angiocarpous than agaricoid Lactarius species are known now. Zelleromyces Article info Received: 2 February 2013; Accepted: 18 June 2013; Published: 20 January 2014. INTRODUCTION sulales species (Gymnomyces lactifer B.C. Zhang & Y.N. Yu and Martellia ramispina B.C. Zhang & Y.N. Yu) and Tao et al. Sequestrate and angiocarpous basidiomata have developed in (1993) described Martellia nanjingensis B. Liu & K. Tao and several groups of Agaricomycetes. -
Biodiversity and Molecular Ecology of Russula and Lactarius in Alaska Based on Soil and Sporocarp DNA Sequences
Russulales-2010 Scripta Botanica Belgica 51: 132-145 (2013) Biodiversity and molecular ecology of Russula and Lactarius in Alaska based on soil and sporocarp DNA sequences József GEML1,2 & D. Lee TAYLOR1 1 Institute of Arctic Biology, 311 Irving I Building, 902 N. Koyukuk Drive, P.O. Box 757000, University of Alaska Fairbanks, Fairbanks, AK 99775-7000, U.S.A. 2 (corresponding author address) National Herbarium of the Netherlands, Netherlands Centre for Biodiversity Naturalis, Leiden University, Einsteinweg 2, P.O. Box 9514, 2300 RA Leiden, The Netherlands [email protected] Abstract. – Although critical for the functioning of ecosystems, fungi are poorly known in high- latitude regions. This paper summarizes the results of the first genetic diversity assessments of Russula and Lactarius, two of the most diverse and abundant fungal genera in Alaska. LSU rDNA sequences from both curated sporocarp collections and soil PCR clone libraries sampled in various types of boreal forests of Alaska were subjected to phylogenetic and statistical ecological analyses. Our diversity assessments suggest that the genus Russula and Lactarius are highly diverse in Alaska. Some of these taxa were identified to known species, while others either matched unidentified sequences in reference databases or belonged to novel, previously unsequenced groups. Taxa in both genera showed strong habitat preference to one of the two major forest types in the sampled regions (black spruce forests and birch-aspen-white spruce forests), as supported by statistical tests. Our results demonstrate high diversity and strong ecological partitioning in two important ectomycorrhizal genera within a relatively small geographic region, but with implications to the expansive boreal forests. -
AR TICLE New Sequestrate Fungi from Guyana: Jimtrappea Guyanensis
IMA FUNGUS · 6(2): 297–317 (2015) doi:10.5598/imafungus.2015.06.02.03 New sequestrate fungi from Guyana: Jimtrappea guyanensis gen. sp. nov., ARTICLE Castellanea pakaraimophila gen. sp. nov., and Costatisporus cyanescens gen. sp. nov. (Boletaceae, Boletales) Matthew E. Smith1, Kevin R. Amses2, Todd F. Elliott3, Keisuke Obase1, M. Catherine Aime4, and Terry W. Henkel2 1Department of Plant Pathology, University of Florida, Gainesville, FL 32611, USA 2Department of Biological Sciences, Humboldt State University, Arcata, CA 95521, USA; corresponding author email: Terry.Henkel@humboldt. edu 3Department of Integrative Studies, Warren Wilson College, Asheville, NC 28815, USA 4Department of Botany & Plant Pathology, Purdue University, West Lafayette, IN 47907, USA Abstract: Jimtrappea guyanensis gen. sp. nov., Castellanea pakaraimophila gen. sp. nov., and Costatisporus Key words: cyanescens gen. sp. nov. are described as new to science. These sequestrate, hypogeous fungi were collected Boletineae in Guyana under closed canopy tropical forests in association with ectomycorrhizal (ECM) host tree genera Caesalpinioideae Dicymbe (Fabaceae subfam. Caesalpinioideae), Aldina (Fabaceae subfam. Papilionoideae), and Pakaraimaea Dipterocarpaceae (Dipterocarpaceae). Molecular data place these fungi in Boletaceae (Boletales, Agaricomycetes, Basidiomycota) ectomycorrhizal fungi and inform their relationships to other known epigeous and sequestrate taxa within that family. Macro- and gasteroid fungi micromorphological characters, habitat, and multi-locus DNA sequence data are provided for each new taxon. Guiana Shield Unique morphological features and a molecular phylogenetic analysis of 185 taxa across the order Boletales justify the recognition of the three new genera. Article info: Submitted: 31 May 2015; Accepted: 19 September 2015; Published: 2 October 2015. INTRODUCTION 2010, Gube & Dorfelt 2012, Lebel & Syme 2012, Ge & Smith 2013). -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
The Secotioid Syndrome Author(S): Harry D
Mycological Society of America The Secotioid Syndrome Author(s): Harry D. Thiers Source: Mycologia, Vol. 76, No. 1 (Jan. - Feb., 1984), pp. 1-8 Published by: Mycological Society of America Stable URL: http://www.jstor.org/stable/3792830 Accessed: 18-08-2016 13:56 UTC REFERENCES Linked references are available on JSTOR for this article: http://www.jstor.org/stable/3792830?seq=1&cid=pdf-reference#references_tab_contents You may need to log in to JSTOR to access the linked references. Your use of the JSTOR archive indicates your acceptance of the Terms & Conditions of Use, available at http://about.jstor.org/terms JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. For more information about JSTOR, please contact [email protected]. Mycological Society of America is collaborating with JSTOR to digitize, preserve and extend access to Mycologia This content downloaded from 152.3.43.180 on Thu, 18 Aug 2016 13:56:00 UTC All use subject to http://about.jstor.org/terms 76(1) M ycologia January-February 1984 Official Publication of the Mycological Society of America THE SECOTIOID SYNDROME HARRY D. THIERS Department of Biological Sciences, San Francisco State University, San Francisco, California 94132 I would like to begin this lecture by complimenting the Officers and Council of The Mycological Society of America for their high degree of cooperation and support during my term of office and for their obvious dedication to the welfare of the Society. -
Sequestrate Fungi from Patagonian Nothofagus Forests: Cystangium (Russulaceae, Basidiomycota)
Sequestrate fungi from Patagonian Nothofagus forests: Cystangium (Russulaceae, Basidiomycota) Trierveiler-Pereira, L., Smith, M. E., Trappe, J. M., & Nouhra, E. R. (2015). Sequestrate fungi from Patagonian Nothofagus forests: Cystangium (Russulaceae, Basidiomycota). Mycologia, 107(1), 90-103. doi:10.3852/13-302 10.3852/13-302 Allen Press Inc. Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Mycologia, 107(1), 2015, pp. 90–103. DOI: 10.3852/13-302 # 2015 by The Mycological Society of America, Lawrence, KS 66044-8897 Sequestrate fungi from Patagonian Nothofagus forests: Cystangium (Russulaceae, Basidiomycota) Larissa Trierveiler-Pereira1 Ectomycorrhizal, hypogeous fungi in the Basidio- PPGBOT, Department of Botany, Universidade Federal mycota and Ascomycota are important components of do Rio Grande do Sul, Porto Alegre, Brazil 91501-970 the forest soil environment. Not only do they function Matthew E. Smith as nutrient absorbing organisms for their tree hosts, Department of Plant Pathology, University of Florida, these fungi also improve soil conditions (Perry et al. Gainesville, Florida 32611 1989) and interact with a variety of forest organisms (Trappe and Luoma 1992). In particular, they are an James M. Trappe important food source for animals in ectomycorrhizal Department of Forest Ecosystems and Society, Oregon forests (Maser et al. 1978, Claridge et al. 2002, Vernes State University, Corvallis, Oregon 97331 et al. 2004, Claridge and Trappe 2005, Trappe et al. Eduardo R. Nouhra 2006, Vernes 2010, Katarzˇyte˙ and Kutorga 2011, Instituto Multidisciplinario de Biologı´a Vegetal Schickmann et al. 2012), including those of Argentina (CONICET), Universidad Nacional de Co´rdoba, (Perez Calvo et al. 1989, Nouhra et al. 2005). -
Notes, Outline and Divergence Times of Basidiomycota
Fungal Diversity (2019) 99:105–367 https://doi.org/10.1007/s13225-019-00435-4 (0123456789().,-volV)(0123456789().,- volV) Notes, outline and divergence times of Basidiomycota 1,2,3 1,4 3 5 5 Mao-Qiang He • Rui-Lin Zhao • Kevin D. Hyde • Dominik Begerow • Martin Kemler • 6 7 8,9 10 11 Andrey Yurkov • Eric H. C. McKenzie • Olivier Raspe´ • Makoto Kakishima • Santiago Sa´nchez-Ramı´rez • 12 13 14 15 16 Else C. Vellinga • Roy Halling • Viktor Papp • Ivan V. Zmitrovich • Bart Buyck • 8,9 3 17 18 1 Damien Ertz • Nalin N. Wijayawardene • Bao-Kai Cui • Nathan Schoutteten • Xin-Zhan Liu • 19 1 1,3 1 1 1 Tai-Hui Li • Yi-Jian Yao • Xin-Yu Zhu • An-Qi Liu • Guo-Jie Li • Ming-Zhe Zhang • 1 1 20 21,22 23 Zhi-Lin Ling • Bin Cao • Vladimı´r Antonı´n • Teun Boekhout • Bianca Denise Barbosa da Silva • 18 24 25 26 27 Eske De Crop • Cony Decock • Ba´lint Dima • Arun Kumar Dutta • Jack W. Fell • 28 29 30 31 Jo´ zsef Geml • Masoomeh Ghobad-Nejhad • Admir J. Giachini • Tatiana B. Gibertoni • 32 33,34 17 35 Sergio P. Gorjo´ n • Danny Haelewaters • Shuang-Hui He • Brendan P. Hodkinson • 36 37 38 39 40,41 Egon Horak • Tamotsu Hoshino • Alfredo Justo • Young Woon Lim • Nelson Menolli Jr. • 42 43,44 45 46 47 Armin Mesˇic´ • Jean-Marc Moncalvo • Gregory M. Mueller • La´szlo´ G. Nagy • R. Henrik Nilsson • 48 48 49 2 Machiel Noordeloos • Jorinde Nuytinck • Takamichi Orihara • Cheewangkoon Ratchadawan • 50,51 52 53 Mario Rajchenberg • Alexandre G. -
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AN ABSTRACT OF THE DISSERTATIONOF Kentaro Hosaka for the degree of Doctor ofPhilosophy in Botany and Plant Pathology presented on October 26, 2005. Title: Systematics, Phylogeny, andBiogeography of the Hysterangiales and Related Taxa (Phallomycetidae, Homobasidiomycetes). Abstract approved: Redacted for Privacy Monophyly of the gomphoid-phalloid dadewas confirmed based on multigene phylogenetic analyses. Four major subclades(Hysterangiales, Geastrales, Gomphales and Phallales) were also demonstratedto be monophyletic. The interrelationships among the subclades were, however, not resolved, andalternative topologies could not be rejected statistically. Nonetheless,most analyses showed that the Hysterangiales and Phallales do not forma monophyletic group, which is in contrast to traditional taxonomy. The higher-level phylogeny of thegomphoid-phalloid fungi tends to suggest that the Gomphales form a sister group with either the Hysterangialesor Phallales. Unweighted parsimonycharacter state reconstruction favorsthe independent gain of the ballistosporic mechanism in the Gomphales, but the alternativescenario of multiple losses of ballistospoiy could not be rejected statistically underlikelihood- based reconstructions. This latterhypothesis is consistent with thewidely accepted hypothesis that the loss of ballistosporyis irreversible. The transformationof fruiting body forms from nongastroid to gastroidwas apparent in the lineage leading to Gautieria (Gomphales), but thetree topology and character statereconstructions supported that truffle-like -
Evolutionary History of the Sequestrate Genus Rossbeevera (Boletaceae) Reveals a New Genus Turmalinea and Highlights the Utility
Persoonia 37, 2016: 173–198 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158516X691212 Evolutionary history of the sequestrate genus Rossbeevera (Boletaceae) reveals a new genus Turmalinea and highlights the utility of ITS minisatellite-like insertions for molecular identification T. Orihara1, T. Lebel 2, Z.-W. Ge3, M.E. Smith 4, N. Maekawa 5 Key words Abstract The sequestrate (truffle-like) basidiomycete genera Rossbeevera, Chamonixia, and Octaviania are closely related to the epigeous mushroom genera Leccinum and Leccinellum. In order to elucidate the properties and place- biogeography ment of several undescribed sequestrate taxa in the group and to reveal the evolutionary history of Rossbeevera and cryptic species its allies, we conducted phylogenetic analyses based on three nuclear (ITS, nLSU, EF-1α) and two mitochondrial DNA barcoding DNA loci (ATP6 and mtSSU) as well as precise morphological observations. Phylogenetic analyses of three nuclear hypogeous fungi loci suggest a complex evolutionary history with sequestrate fruiting bodies present in several clades, including a introgression previously unrecognized sister clade to Rossbeevera. Here we propose a new sequestrate genus, Turmalinea, with species tree four new species and one new subspecies as well as two new species of Rossbeevera. The three-locus nuclear phylogeny resolves species-level divergence within the Rossbeevera-Turmalinea lineage, whereas a separate phylogeny based on two mitochondrial genes corresponds to geographic distance within each species-level line- age and suggests incomplete lineage sorting (ILS) and gene introgression within several intraspecific lineages of Rossbeevera. Furthermore, topological incongruence among the three nuclear single-locus phylogenies suggests that ancient speciation within Rossbeevera probably involved considerable ILS.