Mangrove and Seagrass Identification
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Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School November 2017 Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E. Hepner University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Biology Commons, Ecology and Evolutionary Biology Commons, and the Other Oceanography and Atmospheric Sciences and Meteorology Commons Scholar Commons Citation Hepner, Megan E., "Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary" (2017). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/7408 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary by Megan E. Hepner A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science Marine Science with a concentration in Marine Resource Assessment College of Marine Science University of South Florida Major Professor: Frank Muller-Karger, Ph.D. Christopher Stallings, Ph.D. Steve Gittings, Ph.D. Date of Approval: October 31st, 2017 Keywords: Species richness, biodiversity, functional diversity, species traits Copyright © 2017, Megan E. Hepner ACKNOWLEDGMENTS I am indebted to my major advisor, Dr. Frank Muller-Karger, who provided opportunities for me to strengthen my skills as a researcher on research cruises, dive surveys, and in the laboratory, and as a communicator through oral and presentations at conferences, and for encouraging my participation as a full team member in various meetings of the Marine Biodiversity Observation Network (MBON) and other science meetings. -
Phylogeny of the Damselfishes (Pomacentridae) and Patterns of Asymmetrical Diversification in Body Size and Feeding Ecology
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.07.430149; this version posted February 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Phylogeny of the damselfishes (Pomacentridae) and patterns of asymmetrical diversification in body size and feeding ecology Charlene L. McCord a, W. James Cooper b, Chloe M. Nash c, d & Mark W. Westneat c, d a California State University Dominguez Hills, College of Natural and Behavioral Sciences, 1000 E. Victoria Street, Carson, CA 90747 b Western Washington University, Department of Biology and Program in Marine and Coastal Science, 516 High Street, Bellingham, WA 98225 c University of Chicago, Department of Organismal Biology and Anatomy, and Committee on Evolutionary Biology, 1027 E. 57th St, Chicago IL, 60637, USA d Field Museum of Natural History, Division of Fishes, 1400 S. Lake Shore Dr., Chicago, IL 60605 Corresponding author: Mark W. Westneat [email protected] Journal: PLoS One Keywords: Pomacentridae, phylogenetics, body size, diversification, evolution, ecotype Abstract The damselfishes (family Pomacentridae) inhabit near-shore communities in tropical and temperature oceans as one of the major lineages with ecological and economic importance for coral reef fish assemblages. Our understanding of their evolutionary ecology, morphology and function has often been advanced by increasingly detailed and accurate molecular phylogenies. Here we present the next stage of multi-locus, molecular phylogenetics for the group based on analysis of 12 nuclear and mitochondrial gene sequences from 330 of the 422 damselfish species. -
Stegastes Partitus (Bicolour Damselfish)
UWI The Online Guide to the Animals of Trinidad and Tobago Ecology Stegastes partitus (Bicolour Damselfish) Family: Pomacentridae (Damselfish and Clownfish) Order: Perciformes (Perch and Allied Fish) Class: Actinopterygii (Ray-finned Fish) Fig. 1. Bicolour damselfish, Stegastes partitus. [http://reefguide.org/carib/bicolordamsel.html, downloaded 14 March 2015] TRAITS. Stegastes partitus is one of the five most commonly found fishes amongst the coral reefs within Trinidad and Tobago. Length: total length in males and females is 10cm (Rainer, n.d.). Contains a total of 12 dorsal spines and 14-17 dorsal soft rays in addition to a total of 2 anal spines and 13-15 anal soft rays. A blunt snout is present on the head with a petite mouth and outsized eyes. Colour: Damsels show even distribution of black and white coloration with a yellow section separating both between the last dorsal spine and the anal fin (Fig. 1), however during mating, males under differentiation in their coloration (Schultz, 2008). There are colour variations depending on the geographic region and juveniles differ from the adults. UWI The Online Guide to the Animals of Trinidad and Tobago Ecology DISTRIBUTION. Distribution is spread throughout the western Atlantic (Fig. 2), spanning from Florida to the Bahamas and the Caribbean with possible extension to Brazil (Rainer, n.d.). They are also found along the coast of Mexico. HABITAT AND ACTIVITY. Found at a depth of approximately 30m, damsels are found in habitats bordering coral reefs, that is areas of dead coral, boulders and man-made structures where algae is most likely to grow. -
Linking Larval History to Juvenile Demography in the Bicolor Damselfish Stegastes Partitus (Perciformes: Pomacentridae)
Linking larval history to juvenile demography in the bicolor damselfish Stegastes partitus (Perciformes: Pomacentridae) Richard S. Nemeth University of New Hampshire, Department of Zoology, Durham, NH, USA 03824. Present Address: Center for Marine and Environmental Studies, University of the Virgin Islands, 2 John Brewer’s Bay, St. Thomas, US Virgin Islands, 00802- 9990. Phone: (340) 693-1380, Fax: (340) 693-1385; [email protected] Received 15-I-2004. Corrected 18-VIII-2004. Accepted 29-III-2005. Abstract: Otolith-based reconstructions of daily larval growth increments were used to examine the effect of variation in larval growth on size and age at settlement and post-settlement growth, survival and habitat prefer- ences of juvenile bicolor damselfish (Stegastes partitus Poey). During August 1992 and 1994, newly settled S. partitus were collected from Montastraea coral heads and Porites rubble piles in Tague Bay, St. Croix, U.S. Virgin Islands (17°45’ N, 64°42’ W). Daily lapillar otolith increments from each fish were counted and measured with Optimas image analysis software. S. partitus pelagic larval duration was 23.7 d in 1992 (n = 70) and 24.6 d in 1994 (n = 38) and larval age at settlement averaged 13.0 mm total length both years. Analysis of daily otolith increments demonstrated that variation in larval growth rates and size and age at settlement had no detectable effect on post-settlement survivorship but that larger larvae showed a preference for Montastraea coral at settlement. Late larval and early juvenile growth rates showed a significant positive relationship indicating that growth patterns established during the planktonic stage can span metamorphosis and continue into the benthic juvenile phase. -
Herbivory by the Dusky Damselfish Stegastes Fuscus (Cuvier, 1830)
Journal of Experimental Marine Biology and Ecology, L 229 (1998) 241±264 Herbivory by the Dusky Damsel®sh Stegastes fuscus (Cuvier, 1830) in a tropical rocky shore: effects on the benthic community Carlos Eduardo L. Ferreiraa,b,* , Jose Eduardo A. GoncËalves b , Ricardo Coutinhoba , Alberto C. Peret aDep. de Hidrobiologia, Universidade Federal de SaoÄÄ Carlos, Sao Carlos, S.P., Cep:13560 000, Brazil bDept. de Biologia, Instituto de Estudos do Mar Almirante Paulo Moreira, Arraial do Cabo, R.J., Cep: 28930 000, Brazil Received 12 September 1995; received in revised form 31 March 1997; accepted 13 March 1998 Abstract Experiments were carried out on rocky shores at Arraial do Cabo (Southeast Brazil) to evaluate how the dusky damsel®sh, Stegastes fuscus (Cuvier, 1830) affects the benthic community structure. Cage exclusion showed that S. fuscus strongly in¯uences the algal community in its territories, keeping it in an early succession stage and preventing dominance by Jania spp. Diversity and biomass of the epilithic algal community (EAC) were higher inside territories than | 2 outside. These dense mats hold a diverse and abundant cryptofauna (5 72 ind/100 cm ) that was signi®cantly higher inside territories. Algae comprise 70% of the S. fuscus diet, with the remaining 30% composed of animal material. The ®sh feeds selectively mainly on red ®lamentous algae, such as Polysiphonia spp., Ceramium spp. and Centroceras clavulatum, albeit it also ingests a great amount of calcareous algae (25% of total algae). Total assimilation and nitrogen assimilation were low in S. fuscus. Gut contents turnover varied from 3.7 in summer to 4.1 in winter. -
The Role of Threespot Damselfish (Stegastes Planifrons)
THE ROLE OF THREESPOT DAMSELFISH (STEGASTES PLANIFRONS) AS A KEYSTONE SPECIES IN A BAHAMIAN PATCH REEF A thesis presented to the faculty of the College of Arts and Sciences of Ohio University In partial fulfillment of the requirements for the degree Masters of Science Brooke A. Axline-Minotti August 2003 This thesis entitled THE ROLE OF THREESPOT DAMSELFISH (STEGASTES PLANIFRONS) AS A KEYSTONE SPECIES IN A BAHAMIAN PATCH REEF BY BROOKE A. AXLINE-MINOTTI has been approved for the Program of Environmental Studies and the College of Arts and Sciences by Molly R. Morris Associate Professor of Biological Sciences Leslie A. Flemming Dean, College of Arts and Sciences Axline-Minotti, Brooke A. M.S. August 2003. Environmental Studies The Role of Threespot Damselfish (Stegastes planifrons) as a Keystone Species in a Bahamian Patch Reef. (76 pp.) Director of Thesis: Molly R. Morris Abstract The purpose of this research is to identify the role of the threespot damselfish (Stegastes planifrons) as a keystone species. Measurements from four functional groups (algae, coral, fish, and a combined group of slow and sessile organisms) were made in various territories ranging from zero to three damselfish. Within territories containing damselfish, attack rates from the damselfish were also counted. Measures of both aggressive behavior and density of threespot damselfish were correlated with components of biodiversity in three of the four functional groups, suggesting that damselfish play an important role as a keystone species in this community. While damselfish density and measures of aggression were correlated, in some cases only density was correlated with a functional group, suggesting that damselfish influence their community through mechanisms other than behavior. -
Anomalous Coloration of a Yellow Tail Damselfish Stegastes Arcifrons (Actinopterygii: Pomacentridae) at Isla Del Coco National Park, Costa Rica
Anomalous coloration of a yellow tail damselfish Stegastes arcifrons (Actinopterygii: Pomacentridae) at Isla del Coco National Park, Costa Rica Andrés Beita-Jiménez1,2 & Juan José Alvarado1, 2, 3 1. Escuela de Biología, Universidad de Costa Rica; [email protected] 2. Centro de Investigación en Ciencias del Mar y Limnología, Universidad de Costa Rica; [email protected] 3. Museo de Zoología, Universidad de Costa Rica Received 24-II-2015. Corrected 09-V-2015. Accepted 28-V-2015. Abstract: Coloration patterns of reef fishes are an important trait for mediating intra and interspecific interac- tions, as well as for taxonomic identifications. Here we report a specimen of Stegastes arcifrons that presented a previously unobserved and anomalous color variation on a coral reef at Isla del Coco, Pacific Costa Rica. This color variation is known as xanthism and has been reported in some damselfishes, usually associated with genetic anomally. Rev. Biol. Trop. 64 (Suppl. 1): S197-S199. Epub 2016 February 01. Key words: reef fish, Tropical Eastern Pacific, color pattern, xanthism. Coloration is an essential attribute in reef on a coral reef at Isla del Coco National Park, fish life history. Color patterns are impor- Pacific Costa Rica. tant elements of inter- and intra-specific spe- Isla del Coco (also known as Cocos Island) cies interactions (e.g., predation, competition, is an oceanic island in the Eastern Tropical sexual selection, life stage identification), lear- Pacific Ocean, about 500 km from mainland ning and communication (Siebeck, Wallis, & Costa Rica. It was declared a National Park Litherland, 2008; Leclercq, Taylor, & Migaud, in 1978, a UNESCO World Heritage Site in 2010). -
A Reappraisal of Stegastes Species Occurring in the South Atlantic Using
de Souza et al. Helgol Mar Res (2016) 70:20 DOI 10.1186/s10152-016-0471-x Helgoland Marine Research ORIGINAL ARTICLE Open Access A reappraisal of Stegastes species occurring in the South Atlantic using morphological and molecular data Allyson Santos de Souza1*, Ricardo de Souza Rosa2, Rodrigo Xavier Soares1, Paulo Augusto de Lima‑Filho3, Claudio de Oliveira4, Oscar Akio Shibatta5 and Wagner Franco Molina1 Abstract The taxonomic status of Pomacentridae species can be difficult to determine, due to the high diversity, and in some cases, poorly understood characters, such as color patterns. Although Stegastes rocasensis, endemic to the Rocas atoll and Fernando de Noronha archipelago, and S. sanctipauli, endemic to the São Pedro and São Paulo archipelago, differ in color pattern, they exhibit similar morphological characters and largely overlapping counts of fin rays and lateral-line scales. Another nominal insular species, S. trindadensis, has recently been synonymized with S. fuscus but retained as a valid subspecies by some authors. Counts and morphometric analyses and mitochondrial DNA (COI, 16SrRNA, CytB) and nuclear DNA (rag1 and rhodopsin) comparisons of three insular species (S. rocasensis, S. sanctipauli and S. trindadensis) and three other South Atlantic species (S. fuscus, S. variabilis and S. pictus) were carried out in the present study. Analyses of the principal components obtained by traditional multivariate morphometry indicate that the species in general have similar body morphology. Molecular analyses revealed conspicuous similarity between S. rocasensis and S. sanctipauli and between S. trindadensis and S. fuscus and a clear divergence between S. variabilis from Northeast Brazil and S. variabilis from the Caribbean region. -
Ecology of Fishes on Coral Reefs
C:/ITOOLS/WMS/CUP-NEW/5644691/WORKINGFOLDER/AROM/9781107089181PRE.3D iii [1–14] 4.12.2014 6:17PM Ecology of Fishes on Coral Reefs EDITED BY Camilo Mora Department of Geography, University of Hawai‘i at Manoa, USA C:/ITOOLS/WMS/CUP-NEW/5644691/WORKINGFOLDER/AROM/9781107089181PRE.3D iv [1–14] 4.12.2014 6:17PM University Printing House, Cambridge CB2 8BS, United Kingdom Cambridge University Press is part of the University of Cambridge. It furthers the University’s mission by disseminating knowledge in the pursuit of education, learning and research at the highest international levels of excellence. www.cambridge.org Information on this title: www.cambridge.org/9781107089181 © Cambridge University Press 2015 This publication is in copyright. Subject to statutory exception and to the provisions of relevant collective licensing agreements, no reproduction of any part may take place without the written permission of Cambridge University Press. First published 2015 Printed in the United Kingdom by [XX] A catalog record for this publication is available from the British Library Library of Congress Cataloging in Publication data Ecology of fishes on coral reefs / edited by Camilo Mora, Department of Geography, University of Hawaii at Manoa, USA. pages cm Includes bibliographical references. ISBN 978-1-107-08918-1 1. Coral reef fishes. I. Mora, Camilo. QL620.45.E26 2015 597.177089–dc23 2014043414 ISBN 978-1-107-08918-1 Hardback Cambridge University Press has no responsibility for the persistence or accuracy of URLs for external or third-party internet websites referred to in this publication, and does not guarantee that any content on such websites is, or will remain, accurate or appropriate. -
Andrew David Dorka Cobián Rojas Felicia Drummond Alain García Rodríguez
CUBA’S MESOPHOTIC CORAL REEFS Fish Photo Identification Guide ANDREW DAVID DORKA COBIÁN ROJAS FELICIA DRUMMOND ALAIN GARCÍA RODRÍGUEZ Edited by: John K. Reed Stephanie Farrington CUBA’S MESOPHOTIC CORAL REEFS Fish Photo Identification Guide ANDREW DAVID DORKA COBIÁN ROJAS FELICIA DRUMMOND ALAIN GARCÍA RODRÍGUEZ Edited by: John K. Reed Stephanie Farrington ACKNOWLEDGMENTS This research was supported by the NOAA Office of Ocean Exploration and Research under award number NA14OAR4320260 to the Cooperative Institute for Ocean Exploration, Research and Technology (CIOERT) at Harbor Branch Oceanographic Institute-Florida Atlantic University (HBOI-FAU), and by the NOAA Pacific Marine Environmental Laboratory under award number NA150AR4320064 to the Cooperative Institute for Marine and Atmospheric Studies (CIMAS) at the University of Miami. This expedition was conducted in support of the Joint Statement between the United States of America and the Republic of Cuba on Cooperation on Environmental Protection (November 24, 2015) and the Memorandum of Understanding between the United States National Oceanic and Atmospheric Administration, the U.S. National Park Service, and Cuba’s National Center for Protected Areas. We give special thanks to Carlos Díaz Maza (Director of the National Center of Protected Areas) and Ulises Fernández Gomez (International Relations Officer, Ministry of Science, Technology and Environment; CITMA) for assistance in securing the necessary permits to conduct the expedition and for their tremendous hospitality and logistical support in Cuba. We thank the Captain and crew of the University of Miami R/V F.G. Walton Smith and ROV operators Lance Horn and Jason White, University of North Carolina at Wilmington (UNCW-CIOERT), Undersea Vehicle Program for their excellent work at sea during the expedition. -
Chemical Mediation of Interactions Among Marine Organisms
REVIEW Chemical mediation of interactions among marine organisms Valerie J. Paul" and Melany P. Puglisi* " Smithsonian Marine Station at Fort Pierce, 701 Seaway Drive, Fort Pierce, FL 34949 b School of Pharmacy, Lake Erie College of Osteopathic Medicine, 1858 West Grandview Blvd., Erie, PA 16509-1025 Received (in Cambridge, UK) 9th December 2003 First published as an Advance Article on the web 22nd January 2004 Covering: the literature up to 2003 This review covers the recent marine chemical ecology literature for macroalgae, sponges, octocorals and other benthic invertebrates; 332 references are cited. 1 Introduction focus in marine chemical ecology has been on how chemical 2 Macroalgae defenses of macroalgae and invertebrates mediate predator- 3 Sponges prey and competitive interactions. This field developed rapidly 4 Octocorals as natural product chemists and marine ecologists entered into 5 Ascidians (Tunicates) productive collaborations to address questions of how inverte- 6 Other invertebrates brates and algae use natural products for chemical defense 7 Conclusions against consumers. Significant contributions in this field were 8 References made by several groups of chemical and biological collabor- ators. Among these was a collaboration between members of John Faulkner's group and ecologist Janice Thompson. 1 Introduction Faulkner, Thompson and coworkers conducted some of the In this report, we review recent progress in the field of marine first ecologically sound studies of sponge chemical defenses chemical ecology emphasizing the defensive functions of mar- looking at the natural products chemistry and ecology of ine natural products (secondary metabolites) against predators, marine sponges in Southern California.10"13 Faulkner's interest competitors, fouling organisms and microorganisms. -
Sharkcam Fishes
SharkCam Fishes A Guide to Nekton at Frying Pan Tower By Erin J. Burge, Christopher E. O’Brien, and jon-newbie 1 Table of Contents Identification Images Species Profiles Additional Information Index Trevor Mendelow, designer of SharkCam, on August 31, 2014, the day of the original SharkCam installation SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 4th edition by Erin J. Burge, Christopher E. O’Brien, and jon-newbie is licensed under the Creative Commons Attribution-Noncommercial 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc/4.0/. For questions related to this guide or its usage contact Erin Burge. The suggested citation for this guide is: Burge EJ, CE O’Brien and jon-newbie. 2019. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 4th edition. Los Angeles: Explore.org Ocean Frontiers. 194 pp. Available online http://explore.org/live-cams/player/shark-cam. Guide version 4.0. 5 January 2019. 2 Table of Contents Identification Images Species Profiles Additional Information Index TABLE OF CONTENTS FOREWORD AND INTRODUCTION.................................................................................. 9 IDENTIFICATION IMAGES .......................................................................................... 12 Sharks and Rays ................................................................................................................................... 12 Table: Relative frequency of occurrence and relative size ....................................................................