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Coral Reef Monitoring in Kofiau and Boo Islands Marine Protected Area, Raja Ampat, West Papua. 2009—2011
August 2012 Indo-Pacific Division Indonesia Report No 6/12 Coral Reef Monitoring in Kofiau and Boo Islands Marine Protected Area, Raja Ampat, West Papua. 2009—2011 Report Compiled By: Purwanto, Muhajir, Joanne Wilson, Rizya Ardiwijaya, and Sangeeta Mangubhai August 2012 Indo-Pacific Division Indonesia Report No 6/12 Coral Reef Monitoring in Kofiau and Boo Islands Marine Protected Area, Raja Ampat, West Papua. 2009—2011 Report Compiled By: Purwanto, Muhajir, Joanne Wilson, Rizya Ardiwijaya, and Sangeeta Mangubhai Published by: TheNatureConservancy,Indo-PacificDivision Purwanto:TheNatureConservancy,IndonesiaMarineProgram,Jl.Pengembak2,Sanur,Bali, Indonesia.Email: [email protected] Muhajir: TheNatureConservancy,IndonesiaMarineProgram,Jl.Pengembak2,Sanur,Bali, Indonesia.Email: [email protected] JoanneWilson: TheNatureConservancy,IndonesiaMarineProgram,Jl.Pengembak2,Sanur,Bali, Indonesia. RizyaArdiwijaya:TheNatureConservancy,IndonesiaMarineProgram,Jl.Pengembak2,Sanur, Bali,Indonesia.Email: [email protected] SangeetaMangubhai: TheNatureConservancy,IndonesiaMarineProgram,Jl.Pengembak2, Sanur,Bali,Indonesia.Email: [email protected] Suggested Citation: Purwanto,Muhajir,Wilson,J.,Ardiwijaya,R.,Mangubhai,S.2012.CoralReefMonitoringinKofiau andBooIslandsMarineProtectedArea,RajaAmpat,WestPapua.2009-2011.TheNature Conservancy,Indo-PacificDivision,Indonesia.ReportN,6/12.50pp. © 2012012012201 222 The Nature Conservancy AllRightsReserved.Reproductionforanypurposeisprohibitedwithoutpriorpermission. AllmapsdesignedandcreatedbyMuhajir. CoverPhoto: -
Petition to List Eight Species of Pomacentrid Reef Fish, Including the Orange Clownfish and Seven Damselfish, As Threatened Or Endangered Under the U.S
BEFORE THE SECRETARY OF COMMERCE PETITION TO LIST EIGHT SPECIES OF POMACENTRID REEF FISH, INCLUDING THE ORANGE CLOWNFISH AND SEVEN DAMSELFISH, AS THREATENED OR ENDANGERED UNDER THE U.S. ENDANGERED SPECIES ACT Orange Clownfish (Amphiprion percula) photo by flickr user Jan Messersmith CENTER FOR BIOLOGICAL DIVERSITY SUBMITTED SEPTEMBER 13, 2012 Notice of Petition Rebecca M. Blank Acting Secretary of Commerce U.S. Department of Commerce 1401 Constitution Ave, NW Washington, D.C. 20230 Email: [email protected] Samuel Rauch Acting Assistant Administrator for Fisheries NOAA Fisheries National Oceanographic and Atmospheric Administration 1315 East-West Highway Silver Springs, MD 20910 E-mail: [email protected] PETITIONER Center for Biological Diversity 351 California Street, Suite 600 San Francisco, CA 94104 Tel: (415) 436-9682 _____________________ Date: September 13, 2012 Shaye Wolf, Ph.D. Miyoko Sakashita Center for Biological Diversity Pursuant to Section 4(b) of the Endangered Species Act (“ESA”), 16 U.S.C. § 1533(b), Section 553(3) of the Administrative Procedures Act, 5 U.S.C. § 553(e), and 50 C.F.R.§ 424.14(a), the Center for Biological Diversity hereby petitions the Secretary of Commerce and the National Oceanographic and Atmospheric Administration (“NOAA”), through the National Marine Fisheries Service (“NMFS” or “NOAA Fisheries”), to list eight pomacentrid reef fish and to designate critical habitat to ensure their survival. The Center for Biological Diversity (“Center”) is a non-profit, public interest environmental organization dedicated to the protection of imperiled species and their habitats through science, policy, and environmental law. The Center has more than 350,000 members and online activists throughout the United States. -
Phylogeny of the Damselfishes (Pomacentridae) and Patterns of Asymmetrical Diversification in Body Size and Feeding Ecology
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.07.430149; this version posted February 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Phylogeny of the damselfishes (Pomacentridae) and patterns of asymmetrical diversification in body size and feeding ecology Charlene L. McCord a, W. James Cooper b, Chloe M. Nash c, d & Mark W. Westneat c, d a California State University Dominguez Hills, College of Natural and Behavioral Sciences, 1000 E. Victoria Street, Carson, CA 90747 b Western Washington University, Department of Biology and Program in Marine and Coastal Science, 516 High Street, Bellingham, WA 98225 c University of Chicago, Department of Organismal Biology and Anatomy, and Committee on Evolutionary Biology, 1027 E. 57th St, Chicago IL, 60637, USA d Field Museum of Natural History, Division of Fishes, 1400 S. Lake Shore Dr., Chicago, IL 60605 Corresponding author: Mark W. Westneat [email protected] Journal: PLoS One Keywords: Pomacentridae, phylogenetics, body size, diversification, evolution, ecotype Abstract The damselfishes (family Pomacentridae) inhabit near-shore communities in tropical and temperature oceans as one of the major lineages with ecological and economic importance for coral reef fish assemblages. Our understanding of their evolutionary ecology, morphology and function has often been advanced by increasingly detailed and accurate molecular phylogenies. Here we present the next stage of multi-locus, molecular phylogenetics for the group based on analysis of 12 nuclear and mitochondrial gene sequences from 330 of the 422 damselfish species. -
Stegastes Partitus (Bicolour Damselfish)
UWI The Online Guide to the Animals of Trinidad and Tobago Ecology Stegastes partitus (Bicolour Damselfish) Family: Pomacentridae (Damselfish and Clownfish) Order: Perciformes (Perch and Allied Fish) Class: Actinopterygii (Ray-finned Fish) Fig. 1. Bicolour damselfish, Stegastes partitus. [http://reefguide.org/carib/bicolordamsel.html, downloaded 14 March 2015] TRAITS. Stegastes partitus is one of the five most commonly found fishes amongst the coral reefs within Trinidad and Tobago. Length: total length in males and females is 10cm (Rainer, n.d.). Contains a total of 12 dorsal spines and 14-17 dorsal soft rays in addition to a total of 2 anal spines and 13-15 anal soft rays. A blunt snout is present on the head with a petite mouth and outsized eyes. Colour: Damsels show even distribution of black and white coloration with a yellow section separating both between the last dorsal spine and the anal fin (Fig. 1), however during mating, males under differentiation in their coloration (Schultz, 2008). There are colour variations depending on the geographic region and juveniles differ from the adults. UWI The Online Guide to the Animals of Trinidad and Tobago Ecology DISTRIBUTION. Distribution is spread throughout the western Atlantic (Fig. 2), spanning from Florida to the Bahamas and the Caribbean with possible extension to Brazil (Rainer, n.d.). They are also found along the coast of Mexico. HABITAT AND ACTIVITY. Found at a depth of approximately 30m, damsels are found in habitats bordering coral reefs, that is areas of dead coral, boulders and man-made structures where algae is most likely to grow. -
Linking Larval History to Juvenile Demography in the Bicolor Damselfish Stegastes Partitus (Perciformes: Pomacentridae)
Linking larval history to juvenile demography in the bicolor damselfish Stegastes partitus (Perciformes: Pomacentridae) Richard S. Nemeth University of New Hampshire, Department of Zoology, Durham, NH, USA 03824. Present Address: Center for Marine and Environmental Studies, University of the Virgin Islands, 2 John Brewer’s Bay, St. Thomas, US Virgin Islands, 00802- 9990. Phone: (340) 693-1380, Fax: (340) 693-1385; [email protected] Received 15-I-2004. Corrected 18-VIII-2004. Accepted 29-III-2005. Abstract: Otolith-based reconstructions of daily larval growth increments were used to examine the effect of variation in larval growth on size and age at settlement and post-settlement growth, survival and habitat prefer- ences of juvenile bicolor damselfish (Stegastes partitus Poey). During August 1992 and 1994, newly settled S. partitus were collected from Montastraea coral heads and Porites rubble piles in Tague Bay, St. Croix, U.S. Virgin Islands (17°45’ N, 64°42’ W). Daily lapillar otolith increments from each fish were counted and measured with Optimas image analysis software. S. partitus pelagic larval duration was 23.7 d in 1992 (n = 70) and 24.6 d in 1994 (n = 38) and larval age at settlement averaged 13.0 mm total length both years. Analysis of daily otolith increments demonstrated that variation in larval growth rates and size and age at settlement had no detectable effect on post-settlement survivorship but that larger larvae showed a preference for Montastraea coral at settlement. Late larval and early juvenile growth rates showed a significant positive relationship indicating that growth patterns established during the planktonic stage can span metamorphosis and continue into the benthic juvenile phase. -
Perciformes: Pomacentridae) of the Eastern Pacific
Biological Journal of the Linnean Society, 2011, 102, 593–613. With 9 figures Patterns of morphological evolution of the cephalic region in damselfishes (Perciformes: Pomacentridae) of the Eastern Pacific ROSALÍA AGUILAR-MEDRANO1*, BRUNO FRÉDÉRICH2, EFRAÍN DE LUNA3 and EDUARDO F. BALART1 1Laboratorio de Necton y Ecología de Arrecifes, y Colección Ictiológica, Centro de Investigaciones Biológicas del Noroeste, La Paz, B.C.S. 23090 México 2Laboratoire de Morphologie fonctionnelle et évolutive, Institut de Chimie (B6c), Université de Liège, B-4000 Liège, Belgium 3Departamento de Biodiversidad y Sistemática, Instituto de Ecología, AC, Xalapa, Veracruz 91000 México Received 20 May 2010; revised 21 September 2010; accepted for publication 22 September 2010bij_1586 593..613 Pomacentridae are one of the most abundant fish families inhabiting reefs of tropical and temperate regions. This family, comprising 29 genera, shows a remarkable diversity of habitat preferences, feeding, and behaviours. Twenty-four species belonging to seven genera have been reported in the Eastern Pacific region. The present study focuses on the relationship between the diet and the cephalic profile in the 24 endemic damselfishes of this region. Feeding habits were determined by means of underwater observations and the gathering of bibliographic data. Variations in cephalic profile were analyzed by means of geometric morphometrics and phylogenetic methods. The present study shows that the 24 species can be grouped into three main trophic guilds: zooplanktivores, algivores, and an intermediate group feeding on small pelagic and benthic preys. Shape variations were low within each genus except for Abudefduf. Phylogenetically adjusted regression reveals that head shape can be explained by differences in feeding habits. -
TEMPORAL DYNAMICS of FEEDING and REPRODUCTION of the DAMSEL FISH (Stegastes Fuscus)
TEMPORAL DYNAMICS OF FEEDING AND REPRODUCTION OF THE DAMSEL FISH (Stegastes fuscus) Bhaskara Canan1; Liliane L. G. Souza2; Gilson L. Volpato3; Arrilton Araújo1; Sathyabama Chellappa2 ABSTRACT: This study reports on the feeding and reproductive dynamics of the damsel fish, Stegastes fuscus (Osteichthyes: Perciformes: Pomacentridae) in the rocky coastal reefs of Búzios, Rio Grande do Norte, Brazil. Water temperatures and rainfall data were registered and fish were captured on a monthly basis during one year. Fish body weights and lengths were measured and the stomachs were removed and classified according to their degree of fullness. The gonads were weighed, examined for sex determination and maturation was determined based on macroscopic inspections. A higher frequency of females (78%) was registered in relation to males (22%). The lowest degree of stomach fullness was observed in August and the highest in January. Only 2.49% of the fish had empty stomachs and the rest 97.51% had mainly macroalgae in their stomachs. The period from February to August was associated to a long phase of gonadal resting in males and females. Two peaks of partial spawning were registered during January and September/October. KEY-WORDS: Feeding. Reproduction. Biological rhythm. Environmental parameters. Pomacentridae. DINAMICA TEMPORAL DE ALIMENTAÇÃO E REPRODUÇÃO DO PEIXE-DONZELA, Stegastes fuscus RESUMO: O presente trabalho relata sobre a dinâmica de alimentação e reprodução do peixe-donzela, Stegastes fuscus (Osteichthyes: Perciforemes: Pomacentridae), nos arrecifes rochosos de Búzios, Rio Grande do Norte, Brasil. A temperatura da água e os dados de pluviosidade foram registrados e os peixes foram capturados mensalmente durante o período de um ano. -
Pomacentridae)
Zoologischer Anzeiger 264 (2016) 47–55 Contents lists available at ScienceDirect Zoologischer Anzeiger jou rnal homepage: www.elsevier.com/locate/jcz Insight into biting diversity to capture benthic prey in damselfishes (Pomacentridae) Damien Olivier ∗, Eric Parmentier, Bruno Frédérich Laboratoire de Morphologie Fonctionnelle et Evolutive, AFFISH Research Center, Institut de Chimie (B6C) Université de Liege, B-4000 Liege, Belgium a r t i c l e i n f o a b s t r a c t Article history: The cerato-mandibular (c-md) ligament, joining the hyoid bar to the coronoid process of the angular, Received 9 May 2016 allows Pomacentridae to slam their mouth shut in a few milliseconds. Previous works have revealed that Received in revised form 13 July 2016 such a mechanism is used to feed, but some variability in biting patterns has been observed between two Accepted 13 July 2016 damselfish species. The pelagic feeder Amphiprion clarkii performs two different kinematic patterns to Available online 15 July 2016 bite fixed prey, one that does not depend on the c-md ligament (biting-1) and one that does (biting-2). The benthic feeder Stegastes rectifraenum only performs biting-2. The present study aims to shed light on Keywords: the occurrence of biting-2 in the feeding behaviour of Pomacentridae. To test our hypothesis that biting-2 Cerato-mandibular ligament would be the only biting pattern for benthic feeders, we compared biting behaviours among four species: Feeding behaviour one pelagic feeder, A. clarkii, and three benthic feeders, Neoglyphidodon nigroris, Stegastes leucostictus and Functional morphology Grazing S. rectifraenum. -
Trait Decoupling Promotes Evolutionary Diversification of The
Trait decoupling promotes evolutionary diversification of the trophic and acoustic system of damselfishes rspb.royalsocietypublishing.org Bruno Fre´de´rich1, Damien Olivier1, Glenn Litsios2,3, Michael E. Alfaro4 and Eric Parmentier1 1Laboratoire de Morphologie Fonctionnelle et Evolutive, Applied and Fundamental Fish Research Center, Universite´ de Lie`ge, 4000 Lie`ge, Belgium 2Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland Research 3Swiss Institute of Bioinformatics, Ge´nopode, Quartier Sorge, 1015 Lausanne, Switzerland 4Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA Cite this article: Fre´de´rich B, Olivier D, Litsios G, Alfaro ME, Parmentier E. 2014 Trait decou- Trait decoupling, wherein evolutionary release of constraints permits special- pling promotes evolutionary diversification of ization of formerly integrated structures, represents a major conceptual the trophic and acoustic system of damsel- framework for interpreting patterns of organismal diversity. However, few fishes. Proc. R. Soc. B 281: 20141047. empirical tests of this hypothesis exist. A central prediction, that the tempo of morphological evolution and ecological diversification should increase http://dx.doi.org/10.1098/rspb.2014.1047 following decoupling events, remains inadequately tested. In damselfishes (Pomacentridae), a ceratomandibular ligament links the hyoid bar and lower jaws, coupling two main morphofunctional units directly involved in both feeding and sound production. Here, we test the decoupling hypothesis Received: 2 May 2014 by examining the evolutionary consequences of the loss of the ceratomandib- Accepted: 9 June 2014 ular ligament in multiple damselfish lineages. As predicted, we find that rates of morphological evolution of trophic structures increased following the loss of the ligament. -
Herbivory by the Dusky Damselfish Stegastes Fuscus (Cuvier, 1830)
Journal of Experimental Marine Biology and Ecology, L 229 (1998) 241±264 Herbivory by the Dusky Damsel®sh Stegastes fuscus (Cuvier, 1830) in a tropical rocky shore: effects on the benthic community Carlos Eduardo L. Ferreiraa,b,* , Jose Eduardo A. GoncËalves b , Ricardo Coutinhoba , Alberto C. Peret aDep. de Hidrobiologia, Universidade Federal de SaoÄÄ Carlos, Sao Carlos, S.P., Cep:13560 000, Brazil bDept. de Biologia, Instituto de Estudos do Mar Almirante Paulo Moreira, Arraial do Cabo, R.J., Cep: 28930 000, Brazil Received 12 September 1995; received in revised form 31 March 1997; accepted 13 March 1998 Abstract Experiments were carried out on rocky shores at Arraial do Cabo (Southeast Brazil) to evaluate how the dusky damsel®sh, Stegastes fuscus (Cuvier, 1830) affects the benthic community structure. Cage exclusion showed that S. fuscus strongly in¯uences the algal community in its territories, keeping it in an early succession stage and preventing dominance by Jania spp. Diversity and biomass of the epilithic algal community (EAC) were higher inside territories than | 2 outside. These dense mats hold a diverse and abundant cryptofauna (5 72 ind/100 cm ) that was signi®cantly higher inside territories. Algae comprise 70% of the S. fuscus diet, with the remaining 30% composed of animal material. The ®sh feeds selectively mainly on red ®lamentous algae, such as Polysiphonia spp., Ceramium spp. and Centroceras clavulatum, albeit it also ingests a great amount of calcareous algae (25% of total algae). Total assimilation and nitrogen assimilation were low in S. fuscus. Gut contents turnover varied from 3.7 in summer to 4.1 in winter. -
Reef Fishes of the Bird's Head Peninsula, West
Check List 5(3): 587–628, 2009. ISSN: 1809-127X LISTS OF SPECIES Reef fishes of the Bird’s Head Peninsula, West Papua, Indonesia Gerald R. Allen 1 Mark V. Erdmann 2 1 Department of Aquatic Zoology, Western Australian Museum. Locked Bag 49, Welshpool DC, Perth, Western Australia 6986. E-mail: [email protected] 2 Conservation International Indonesia Marine Program. Jl. Dr. Muwardi No. 17, Renon, Denpasar 80235 Indonesia. Abstract A checklist of shallow (to 60 m depth) reef fishes is provided for the Bird’s Head Peninsula region of West Papua, Indonesia. The area, which occupies the extreme western end of New Guinea, contains the world’s most diverse assemblage of coral reef fishes. The current checklist, which includes both historical records and recent survey results, includes 1,511 species in 451 genera and 111 families. Respective species totals for the three main coral reef areas – Raja Ampat Islands, Fakfak-Kaimana coast, and Cenderawasih Bay – are 1320, 995, and 877. In addition to its extraordinary species diversity, the region exhibits a remarkable level of endemism considering its relatively small area. A total of 26 species in 14 families are currently considered to be confined to the region. Introduction and finally a complex geologic past highlighted The region consisting of eastern Indonesia, East by shifting island arcs, oceanic plate collisions, Timor, Sabah, Philippines, Papua New Guinea, and widely fluctuating sea levels (Polhemus and the Solomon Islands is the global centre of 2007). reef fish diversity (Allen 2008). Approximately 2,460 species or 60 percent of the entire reef fish The Bird’s Head Peninsula and surrounding fauna of the Indo-West Pacific inhabits this waters has attracted the attention of naturalists and region, which is commonly referred to as the scientists ever since it was first visited by Coral Triangle (CT). -
Spatial Structure of Coral Reef Fish Communities in the Ryukyu Islands
Oceanologica Acta 26 (2003) 537–547 www.elsevier.com/locate/oceact Spatial structure of coral reef fish communities in the Ryukyu Islands, southern Japan Répartition spatiale des communautés de poissons dans différentes îles coralliennes des Ryukyus (sud du Japon) David Lecchini a,*, Mehdi Adjeroud a,b, Morgan S. Pratchett a,c, Laurence Cadoret a,b, René Galzin a a École pratique des Hautes-Études, UMR CNRS 8046, Université de Perpignan, 66860 Perpignan, France b Department of Chemistry, Biology, and Marine Science, University of the Ryukyus Nishihava, Okinawa 903-01, Japan c Centre for Coral Reef Biodiversity, James Cook University, Townsville, Qld 4811, Australia Abstract Coral reef fishes often exhibit a high degree of structure in their distribution and abundance, but the factors that influence their spatial arrangement are poorly understood. This study sought to explain the spatial structure of coral reef fish communities in the Ryukyu Archipelago, southern Japan.Visual surveys of coral reef fishes were conducted at multiple stations across the fringing reef (from the inner reef flat to the outer slope) at each of three different islands; Aka, Ishigaki and Sesoko. Spatial variation in fish communities (within and among reefs) was then compared to changes in environmental variables (water depth, distance from the shoreline, reef zone, coral abundance and coral richness). Despite being small islands, the total species richness of coral reef fishes in the Ryukyu Islands was very high (>87 species per reef). Mean abundance of reef fishes was also very high (x = 2.26 ± 0.20 S.E. fishes per m2), but more than 80% of all fishes were from the family Pomacentridae.