Multiple Large-Scale Gene and Genome Duplications During the Evolution of Hexapods
Multiple large-scale gene and genome duplications during the evolution of hexapods Zheng Lia,1, George P. Tileyb,c,1, Sally R. Galuskaa, Chris R. Reardona, Thomas I. Kiddera, Rebecca J. Rundella,d, and Michael S. Barkera,2 aDepartment of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721; bDepartment of Biology, University of Florida, Gainesville, FL 32611; cDepartment of Biology, Duke University, Durham, NC 27708; and dDepartment of Environmental and Forest Biology, State University of New York College of Environmental Science and Forestry, Syracuse, NY 13210 Edited by Michael Freeling, University of California, Berkeley, CA, and approved March 12, 2018 (received for review June 14, 2017) Polyploidy or whole genome duplication (WGD) is a major contrib- than 800,000 described hexapod species (25) are known polyploids utor to genome evolution and diversity. Although polyploidy is (17, 20). However, until recently there were limited data available recognized as an important component of plant evolution, it is to search for evidence of paleopolyploidy among the hexapods generally considered to play a relatively minor role in animal and other animal clades. Thus, the contributions of polyploidy to evolution. Ancient polyploidy is found in the ancestry of some animal evolution and the differences with plant evolution have animals, especially fishes, but there is little evidence for ancient remained unclear. WGDs in other metazoan lineages. Here we use recently published To search for evidence of WGDs among the hexapods, we transcriptomes and genomes from more than 150 species across the leveraged recently released genomic data for the insects (26). insect phylogeny to investigate whether ancient WGDs occurred Combined with additional datasets from public databases, we assembled 128 transcriptomes and 27 genomes with at least one during the evolution of Hexapoda, the most diverse clade of animals.
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