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Sea Squirt Symbionts! Or What I Did on My Summer Vacation… Leah Blasiak 2011 Microbial Diversity Course
Sea Squirt Symbionts! Or what I did on my summer vacation… Leah Blasiak 2011 Microbial Diversity Course Abstract Microbial symbionts of tunicates (sea squirts) have been recognized for their capacity to produce novel bioactive compounds. However, little is known about most tunicate-associated microbial communities, even in the embryology model organism Ciona intestinalis. In this project I explored 3 local tunicate species (Ciona intestinalis, Molgula manhattensis, and Didemnum vexillum) to identify potential symbiotic bacteria. Tunicate-specific bacterial communities were observed for all three species and their tissue specific location was determined by CARD-FISH. Introduction Tunicates and other marine invertebrates are prolific sources of novel natural products for drug discovery (reviewed in Blunt, 2010). Many of these compounds are biosynthesized by a microbial symbiont of the animal, rather than produced by the animal itself (Schmidt, 2010). For example, the anti-cancer drug patellamide, originally isolated from the colonial ascidian Lissoclinum patella, is now known to be produced by an obligate cyanobacterial symbiont, Prochloron didemni (Schmidt, 2005). Research on such microbial symbionts has focused on their potential for overcoming the “supply problem.” Chemical synthesis of natural products is often challenging and expensive, and isolation of sufficient quantities of drug for clinical trials from wild sources may be impossible or environmentally costly. Culture of the microbial symbiont or heterologous expression of the biosynthetic genes offers a relatively economical solution. Although the microbial origin of many tunicate compounds is now well established, relatively little is known about the extent of such symbiotic associations in tunicates and their biological function. Tunicates (or sea squirts) present an interesting system in which to study bacterial/eukaryotic symbiosis as they are deep-branching members of the Phylum Chordata (Passamaneck, 2005 and Buchsbaum, 1948). -
1471-2148-9-187.Pdf
BMC Evolutionary Biology BioMed Central Research article Open Access An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models Georgia Tsagkogeorga1,2, Xavier Turon3, Russell R Hopcroft4, Marie- Ka Tilak1,2, Tamar Feldstein5, Noa Shenkar5,6, Yossi Loya5, Dorothée Huchon5, Emmanuel JP Douzery1,2 and Frédéric Delsuc*1,2 Address: 1Université Montpellier 2, Institut des Sciences de l'Evolution (UMR 5554), CC064, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France, 2CNRS, Institut des Sciences de l'Evolution (UMR 5554), CC064, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France, 3Centre d'Estudis Avançats de Blanes (CEAB, CSIC), Accés Cala S. Francesc 14, 17300 Blanes (Girona), Spain, 4Institute of Marine Science, University of Alaska Fairbanks, Fairbanks, Alaska, USA, 5Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, 69978, Israel and 6Department of Biology, University of Washington, Seattle WA 98195, USA Email: Georgia Tsagkogeorga - [email protected]; Xavier Turon - [email protected]; Russell R Hopcroft - [email protected]; Marie-Ka Tilak - [email protected]; Tamar Feldstein - [email protected]; Noa Shenkar - [email protected]; Yossi Loya - [email protected]; Dorothée Huchon - [email protected]; Emmanuel JP Douzery - [email protected]; Frédéric Delsuc* - [email protected] * Corresponding author Published: 5 August 2009 Received: 16 October 2008 Accepted: 5 August 2009 BMC Evolutionary Biology 2009, 9:187 doi:10.1186/1471-2148-9-187 This article is available from: http://www.biomedcentral.com/1471-2148/9/187 © 2009 Tsagkogeorga et al; licensee BioMed Central Ltd. -
De Novo Draft Assembly of the Botrylloides Leachii Genome
bioRxiv preprint doi: https://doi.org/10.1101/152983; this version posted June 21, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 De novo draft assembly of the Botrylloides leachii genome 2 provides further insight into tunicate evolution. 3 4 Simon Blanchoud1#, Kim Rutherford2, Lisa Zondag1, Neil Gemmell2 and Megan J Wilson1* 5 6 1 Developmental Biology and Genomics Laboratory 7 2 8 Department of Anatomy, School of Biomedical Sciences, University of Otago, P.O. Box 56, 9 Dunedin 9054, New Zealand 10 # Current address: Department of Zoology, University of Fribourg, Switzerland 11 12 * Corresponding author: 13 Email: [email protected] 14 Ph. +64 3 4704695 15 Fax: +64 479 7254 16 17 Keywords: chordate, regeneration, Botrylloides leachii, ascidian, tunicate, genome, evolution 1 bioRxiv preprint doi: https://doi.org/10.1101/152983; this version posted June 21, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 18 Abstract (250 words) 19 Tunicates are marine invertebrates that compose the closest phylogenetic group to the 20 vertebrates. This chordate subphylum contains a particularly diverse range of reproductive 21 methods, regenerative abilities and life-history strategies. Consequently, tunicates provide an 22 extraordinary perspective into the emergence and diversity of chordate traits. Currently 23 published tunicate genomes include three Phlebobranchiae, one Thaliacean, one Larvacean 24 and one Stolidobranchian. To gain further insights into the evolution of the tunicate phylum, 25 we have sequenced the genome of the colonial Stolidobranchian Botrylloides leachii. -
Bering Sea Marine Invasive Species Assessment Alaska Center for Conservation Science
Bering Sea Marine Invasive Species Assessment Alaska Center for Conservation Science Scientific Name: Molgula citrina Phylum Chordata Common Name sea grape Class Ascidiacea Order Stolidobranchia Family Molgulidae Z:\GAP\NPRB Marine Invasives\NPRB_DB\SppMaps\MOLCIT.png 78 Final Rank 53.15 Data Deficiency: 8.75 Category Scores and Data Deficiencies Total Data Deficient Category Score Possible Points Distribution and Habitat: 20.5 26 3.75 Anthropogenic Influence: 4.75 10 0 Biological Characteristics: 19.5 30 0 Impacts: 3.75 25 5.00 Figure 1. Occurrence records for non-native species, and their geographic proximity to the Bering Sea. Ecoregions are based on the classification system by Spalding et al. (2007). Totals: 48.50 91.25 8.75 Occurrence record data source(s): NEMESIS and NAS databases. General Biological Information Tolerances and Thresholds Minimum Temperature (°C) -1.4 Minimum Salinity (ppt) 17 Maximum Temperature (°C) 12.2 Maximum Salinity (ppt) 35 Minimum Reproductive Temperature (°C) NA Minimum Reproductive Salinity (ppt) 31* Maximum Reproductive Temperature (°C) NA Maximum Reproductive Salinity (ppt) 35* Additional Notes M. citrina is a prominent member of the fouling community. It is widely distributed in the North Atlantic, and has been reported as far north as 78°N (Lambert et al. 2010). In North America, it has been found from eastern Canada to Massachusetts. In 2008, it was found in Kachemak Bay in Alaska, the first time it had been detected in the Pacific Ocean (Lambert et al. 2010). While it is possible that these individuals are native to AK, preliminary DNA results suggest that they are genetically identical to specimens of the NE Atlantic. -
Redalyc.Keys for the Identification of Families and Genera of Atlantic
Biota Neotropica ISSN: 1676-0611 [email protected] Instituto Virtual da Biodiversidade Brasil Moreira da Rocha, Rosana; Bastos Zanata, Thais; Moreno, Tatiane Regina Keys for the identification of families and genera of Atlantic shallow water ascidians Biota Neotropica, vol. 12, núm. 1, enero-marzo, 2012, pp. 1-35 Instituto Virtual da Biodiversidade Campinas, Brasil Available in: http://www.redalyc.org/articulo.oa?id=199123750022 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Keys for the identification of families and genera of Atlantic shallow water ascidians Rocha, R.M. et al. Biota Neotrop. 2012, 12(1): 000-000. On line version of this paper is available from: http://www.biotaneotropica.org.br/v12n1/en/abstract?identification-key+bn01712012012 A versão on-line completa deste artigo está disponível em: http://www.biotaneotropica.org.br/v12n1/pt/abstract?identification-key+bn01712012012 Received/ Recebido em 16/07/2011 - Revised/ Versão reformulada recebida em 13/03/2012 - Accepted/ Publicado em 14/03/2012 ISSN 1676-0603 (on-line) Biota Neotropica is an electronic, peer-reviewed journal edited by the Program BIOTA/FAPESP: The Virtual Institute of Biodiversity. This journal’s aim is to disseminate the results of original research work, associated or not to the program, concerned with characterization, conservation and sustainable use of biodiversity within the Neotropical region. Biota Neotropica é uma revista do Programa BIOTA/FAPESP - O Instituto Virtual da Biodiversidade, que publica resultados de pesquisa original, vinculada ou não ao programa, que abordem a temática caracterização, conservação e uso sustentável da biodiversidade na região Neotropical. -
Conservation of Peripheral Nervous System Formation Mechanisms in Divergent Ascidian Embryos
RESEARCH ARTICLE Conservation of peripheral nervous system formation mechanisms in divergent ascidian embryos Joshua F Coulcher1†, Agne` s Roure1†, Rafath Chowdhury1, Me´ ryl Robert1, Laury Lescat1‡, Aure´ lie Bouin1§, Juliana Carvajal Cadavid1, Hiroki Nishida2, Se´ bastien Darras1* 1Sorbonne Universite´, CNRS, Biologie Inte´grative des Organismes Marins (BIOM), Banyuls-sur-Mer, France; 2Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Japan Abstract Ascidians with very similar embryos but highly divergent genomes are thought to have undergone extensive developmental system drift. We compared, in four species (Ciona and Phallusia for Phlebobranchia, Molgula and Halocynthia for Stolidobranchia), gene expression and gene regulation for a network of six transcription factors regulating peripheral nervous system *For correspondence: (PNS) formation in Ciona. All genes, but one in Molgula, were expressed in the PNS with some [email protected] differences correlating with phylogenetic distance. Cross-species transgenesis indicated strong † These authors contributed levels of conservation, except in Molgula, in gene regulation despite lack of sequence conservation equally to this work of the enhancers. Developmental system drift in ascidians is thus higher for gene regulation than Present address: ‡Department for gene expression and is impacted not only by phylogenetic distance, but also in a clade-specific of Developmental and Molecular manner and unevenly within a network. Finally, considering that Molgula is divergent in our Biology, Albert Einstein College analyses, this suggests deep conservation of developmental mechanisms in ascidians after 390 My of Medicine, New York, United of separate evolution. States; §Toulouse Biotechnology Institute, Universite´de Toulouse, CNRS, INRAE, INSA, Toulouse, France Competing interests: The Introduction authors declare that no The formation of an animal during embryonic development is controlled by the exquisitely precise competing interests exist. -
Bostricobranchus Digonas Abbott (Ascidiacea, Molgulidae) in Paranaguá Bay, Paraná, Brazil
Bostricobranchus digonas Abbott (Ascidiacea, Molgulidae) in paranaguá Bay, Paraná, Brazil. A case of recent invasion? 1 Rosana Moreira da Rocha 2 ABSTRACT. Bostricobranchus digonas Abbott, 1951 was discovered by dredging near Cotinga Island, Paranaguá Bay, Paraná (25°31'5 II "S, 48°28'714"W). Concen trated in a small area 1.5 m deep, lhe animais were collected by a Van Veen devi ce. All sizes from 3 mm up to 2 cm in body diameter were recovered. This is the ftrst report of a species of this genus in lhe South Atlantic and its occurrence is discussed. KEY WORDS . Ascidiacea, Molgulidae, Bostricobranchus, nonindigenous fauna Bostricobranchus digonas Abbott, 1951 is an estuarine species, to date, only described in Florida, USA. Here, the second occurrence of this species is reported in southeastern Brazil. Many individuais were collected in Paranaguá estuary, but surprisingly subsequent sampling failed to find more individuaIs. Marine species invasions have received much concern in recent years (CARLTON & GELLER 1993; LAMBERT 2001 for a review on ascidians) and one of the most difficult aspects in studying the consequences of these invasions is to determine when new species arrive in any region. This paper describes morpholo gical characters of a Bostricobranchus Traustedt, 1883 population showing that the individuais are very similar to the population of B. digonas from Florida, to which it is thought conspecific. AIso, the presence of an important harbor for petroleum tanking ships nearby suggests that this is a possible recent introduction. MATERIAL ANO METHOOS Specimens were collected in August 2000 by a Van Veen devi ce at Cotinga Island, Paranaguá Bay, Paraná (25°31 '511 "S, 48°28'714"W), an important estuary in southern Brazil. -
Development of a Marine Sensitivity Mapping Database and GIS Integration
The Marine Life Information Network® for Britain and Ireland (MarLIN) Development of a marine sensitivity mapping database and GIS integration. Stage 1. Review of current habitat and species information Contract no. FC 73-02-245 Report to Cyngor Cefn Gwlad Cymru / Countryside Council for Wales Harvey Tyler-Walters Olwen Ager Keith Hiscock December 2002 Reference: Tyler-Walters, H., Ager, O.E.D. & Hiscock, K., 2002. Development of a marine sensitivity mapping database and GIS integration. Stage 1. Review of current habitat and species information. Report to Cyngor Cefn Gwlad Cymru / Countryside Council for Wales from the Marine Life Information Network (MarLIN). Plymouth: Marine Biological Association of the UK. [Contract no. FC 73-02-245] Sensitivity mapping: review of current habitat and species information MarLIN 2 Sensitivity mapping: review of current habitat and species information MarLIN Development of a marine sensitivity mapping database and GIS integration. Stage 1. Review of current habitat and species information. Contents 1. AIMS AND BACKGROUND TO CONTRACT........................................................................................................9 2. TIMETABLE.....................................................................................................................................................9 3. METHODOLOGY..............................................................................................................................................9 4. RESULTS .......................................................................................................................................................10 -
Pedunculate Molgula Species (Ascidiidae, Molgulidae) from the French Antarctic Sector
Zootaxa 3920 (1): 171–197 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2015 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3920.1.9 http://zoobank.org/urn:lsid:zoobank.org:pub:C6BB0C5A-3317-4119-9C41-02F0EC487A9E Pedunculate Molgula species (Ascidiidae, Molgulidae) from the French Antarctic sector. Redescription and taxonomic revision FRANÇOISE MONNIOT1 & AGNÈS DETTAI2 1Muséum national d’Histoire naturelle, DMPA, 57 rue Cuvier Fr 75231 Paris cedex 05, France. E-mail: [email protected] 2Institut de systématique et Evolution, YSYEB-UMR 7205, UMPC EPHE Muséum national d’Histoire naturelle CP 26, 57 rue Cuvier 75231 Paris cedex 05 France. E-mail: [email protected] Abstract Following the Challenger Expedition in the southern Hemisphere, several international surveys have studied Antarctic as- cidians. Several pedunculate Molgula were successively described under various names. From the French part of the Ant- arctic continent and the Kerguelen area, numerous Molgula were recently collected. They are described here in different species, but closely allied. Their taxonomy is revised with an historical review of the most detailed publications and a link to the ancient names. Key words: Antarctic, Ascidians, Molgula species Introduction From the nineteenth century successive expeditions have investigated the benthic marine invertebrate fauna around the Antarctic continent. The “Challenger Expedition” (1873–1876) was the first to collect a large amount of invertebrates at different depths. Later, simultaneous surveys have also explored the southern ocean: the “Deutsch Sud-Polar Expedition” (1901–1903), the British “National Expedition” (1901–1904), the “Swedish Antarctic Expedition” (1901–1903), the “French Antarctic Expedition” (1903–1905), the “Australian Antarctic Expedition” (1911–1914). -
Ascidian News #82 December 2018
ASCIDIAN NEWS* Gretchen Lambert 12001 11th Ave. NW, Seattle, WA 98177 206-365-3734 [email protected] home page: http://depts.washington.edu/ascidian/ Number 82 December 2018 A big thank-you to all who sent in contributions. There are 85 New Publications listed at the end of this issue. Please continue to send me articles, and your new papers, to be included in the June 2019 issue of AN. It’s never too soon to plan ahead. *Ascidian News is not part of the scientific literature and should not be cited as such. NEWS AND VIEWS 1. From Stefano Tiozzo ([email protected]) and Remi Dumollard ([email protected]): The 10th Intl. Tunicata Meeting will be held at the citadel of Saint Helme in Villefranche sur Mer (France), 8- 12 July 2019. The web site with all the information will be soon available, save the date! We are looking forward to seeing you here in the Riviera. A bientôt! Remi and Stefano 2. The 10th Intl. Conference on Marine Bioinvasions was held in Puerto Madryn, Patagonia, Argentina, October 16-18. At the conference website (http://www.marinebioinvasions.info/index) the program and abstracts in pdf can be downloaded. Dr. Rosana Rocha presented one of the keynote talks: "Ascidians in the anthropocene - invasions waiting to happen". See below under Meetings Abstracts for all the ascidian abstracts; my thanks to Evangelina Schwindt for compiling them. The next (11th) meeting will be in Annapolis, Maryland, organized by Greg Ruiz, Smithsonian Invasions lab, date to be determined. 3. Conference proceedings of the May 2018 Invasive Sea Squirt Conference will be peer reviewed and published in a special issue of the REABIC journal Management of Biological Invasions. -
Metabarcoding Analysis on European Coastal Samples Reveals New
www.nature.com/scientificreports OPEN Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity Received: 8 November 2017 David López-Escardó1, Jordi Paps2, Colomban de Vargas3,4, Ramon Massana5, Accepted: 5 June 2018 Iñaki Ruiz-Trillo 1,6,7 & Javier del Campo1,5 Published: xx xx xxxx Although animals are among the best studied organisms, we still lack a full description of their diversity, especially for microscopic taxa. This is partly due to the time-consuming and costly nature of surveying animal diversity through morphological and molecular studies of individual taxa. A powerful alternative is the use of high-throughput environmental sequencing, providing molecular data from all organisms sampled. We here address the unknown diversity of animal phyla in marine environments using an extensive dataset designed to assess eukaryotic ribosomal diversity among European coastal locations. A multi-phylum assessment of marine animal diversity that includes water column and sediments, oxic and anoxic environments, and both DNA and RNA templates, revealed a high percentage of novel 18S rRNA sequences in most phyla, suggesting that marine environments have not yet been fully sampled at a molecular level. This novelty is especially high among Platyhelminthes, Acoelomorpha, and Nematoda, which are well studied from a morphological perspective and abundant in benthic environments. We also identifed, based on molecular data, a potentially novel group of widespread tunicates. Moreover, we recovered a high number of reads for Ctenophora and Cnidaria in the smaller fractions suggesting their gametes might play a greater ecological role than previously suspected. Te animal kingdom is one of the best-studied branches of the tree of life1, with more than 1.5 million species described in around 35 diferent phyla2. -
Tunicata 4 Alberto Stolfi and Federico D
Tunicata 4 Alberto Stolfi and Federico D. Brown Chapter vignette artwork by Brigitte Baldrian. © Brigitte Baldrian and Andreas Wanninger. A. Stolfi Department of Biology , Center for Developmental Genetics, New York University , New York , NY , USA F. D. Brown (*) EvoDevo Laboratory, Departamento de Zoologia , Instituto de Biociências, Universidade de São Paulo , São Paulo , SP , Brazil Evolutionary Developmental Biology Laboratory, Department of Biological Sciences , Universidad de los Andes , Bogotá , Colombia Centro Nacional de Acuicultura e Investigaciones Marinas (CENAIM) , Escuela Superior Politécnica del Litoral (ESPOL) , San Pedro , Santa Elena , Ecuador e-mail: [email protected] A. Wanninger (ed.), Evolutionary Developmental Biology of Invertebrates 6: Deuterostomia 135 DOI 10.1007/978-3-7091-1856-6_4, © Springer-Verlag Wien 2015 [email protected] 136 A. Stolfi and F.D. Brown Above all , perhaps , I am indebted to a decidedly the phylogenetic relationships between the three vegetative , often beautiful , and generally obscure classes and many orders and families have yet to group of marine animals , both for their intrinsic interest and for the enjoyment I have had in search- be satisfactorily settled. Appendicularia, ing for them . N. J. Berrill (1955) Thaliacea, and Ascidiacea remain broadly used in textbooks and scientifi c literature as the three classes of tunicates; however, recent molecular INTRODUCTION phylogenies have provided support for the mono- phyly of only Appendicularia and Thaliacea, but Tunicates are a group of marine fi lter-feeding not of Ascidiacea (Swalla et al. 2000 ; animals1 that have been traditionally divided into Tsagkogeorga et al. 2009 ; Wada 1998 ). A para- three classes: (1) Appendicularia, also known as phyletic Ascidiacea calls for a reevaluation of larvaceans because their free-swimming and tunicate relationships.