경추 척수 손상 환자에서 발생한 Providencia Rettgeri 패혈증 1예 조현정·임승진·천승연·박권오·이상호·박종원·이진서·엄중식 한림대학교 의과대학 내과학교실
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Uncommon Pathogens Causing Hospital-Acquired Infections in Postoperative Cardiac Surgical Patients
Published online: 2020-03-06 THIEME Review Article 89 Uncommon Pathogens Causing Hospital-Acquired Infections in Postoperative Cardiac Surgical Patients Manoj Kumar Sahu1 Netto George2 Neha Rastogi2 Chalatti Bipin1 Sarvesh Pal Singh1 1Department of Cardiothoracic and Vascular Surgery, CN Centre, All Address for correspondence Manoj K Sahu, MD, DNB, Department India Institute of Medical Sciences, Ansari Nagar, New Delhi, India of Cardiothoracic and Vascular Surgery, CTVS office, 7th floor, CN 2Infectious Disease, Department of Medicine, All India Institute of Centre, All India Institute of Medical Sciences, New Delhi-110029, Medical Sciences, Ansari Nagar, New Delhi, India India (e-mail: [email protected]). J Card Crit Care 2020;3:89–96 Abstract Bacterial infections are common causes of sepsis in the intensive care units. However, usually a finite number of Gram-negative bacteria cause sepsis (mostly according to the hospital flora). Some organisms such as Escherichia coli, Acinetobacter baumannii, Klebsiella pneumoniae, Pseudomonas aeruginosa, and Staphylococcus aureus are relatively common. Others such as Stenotrophomonas maltophilia, Chryseobacterium indologenes, Shewanella putrefaciens, Ralstonia pickettii, Providencia, Morganella species, Nocardia, Elizabethkingia, Proteus, and Burkholderia are rare but of immense importance to public health, in view of the high mortality rates these are associated with. Being aware of these organisms, as the cause of hospital-acquired infections, helps in the prevention, Keywords treatment, and control of sepsis in the high-risk cardiac surgical patients including in ► uncommon pathogens heart transplants. Therefore, a basic understanding of when to suspect these organ- ► hospital-acquired isms is important for clinical diagnosis and initiating therapeutic options. This review infection discusses some rarely appearing pathogens in our intensive care unit with respect to ► cardiac surgical the spectrum of infections, and various antibiotics that were effective in managing intensive care unit these bacteria. -
2021 ECCMID | 00656 in Vitro Activities of Ceftazidime-Avibactam and Comparator Agents Against Enterobacterales
IHMA In Vitro Activities of Ceftazidime-avibactam and Comparator Agents against Enterobacterales and 2122 Palmer Drive 00656 Schaumburg, IL 60173 USA Pseudomonas aeruginosa from Israel Collected Through the ATLAS Global Surveillance Program 2013-2019 www.ihma.com M. Hackel1, M. Wise1, G. Stone2, D. Sahm1 1IHMA, Inc., Schaumburg IL, USA, 2Pfizer Inc., Groton, CT USA Introduction Results Results Summary Avibactam (AVI) is a non-β- Table 1 Distribution of 2,956 Enterobacterales from Israel by species Table 2. In vitro activity of ceftazidime-avibactam and comparators agents Figure 2. Ceftazidime and ceftazidime-avibactam MIC distribution against 29 . Ceftazidime-avibactam exhibited a potent lactam, β-lactamase inhibitor against Enterobacterales and P. aeruginosa from Israel, 2013-2019 non-MBL carbapenem-nonsusceptible (CRE) Enterobacterales from Israel, antimicrobial activity higher than all Organism N % of Total mg/L that can restore the activity of Organism Group (N) %S 2013-2019 comparator agents against all Citrobacter amalonaticus 2 0.1% MIC90 MIC50 Range ceftazidime (CAZ) against Enterobacterales (2956) 20 Enterobacterales from Israel (MIC90, 0.5 Citrobacter braakii 5 0.2% Ceftazidime-avibactam 99.8 0.5 0.12 ≤0.015 - > 128 Ceftazidime Ceftazidime-avibactam organisms that possess Class 18 mg/L; 99.8% susceptible). Citrobacter freundii 96 3.2% Ceftazidime 70.1 64 0.25 ≤0.015 - > 128 A, C, and some Class D β- Cefepime 71.8 > 16 ≤0.12 ≤0.12 - > 16 16 . Susceptibility to ceftazidime-avibactam lactmase enzymes. This study Citrobacter gillenii 1 <0.1% Meropenem 98.8 0.12 ≤0.06 ≤0.06 - > 8 increased to 100% for the Enterobacterales Amikacin 95.4 8 2 ≤0.25 - > 32 14 examined the in vitro activity Citrobacter koseri 123 4.2% when MBL-positive isolates were removed Colistin (n=2544)* 82.2 > 8 0.5 ≤0.06 - > 8 12 of CAZ-AVI and comparators Citrobacter murliniae 1 <0.1% Piperacillin-tazobactam 80.4 32 2 ≤0.12 - > 64 from analysis. -
The LOUISIANA ANTIBIOGRAM Louisiana Antibiotic Resistance 2014
The LOUISIANA ANTIBIOGRAM Louisiana Antibiotic Trends in Antibiotic Resistance Resistance 2014 in Louisiana 2008 Zahidul Islam MBBS, MPH, Raoult C Ratard MD MPH Contributors to this report: Lauren Kleamenakis MPH, Anup Subedee MD MPH and Raoult Ratard MD MPH. This report covers bacteria causing severe human infections and the antibiotics used to treat those infections. Resistance to other antimicrobials (antivirals, antifungals and anti-parasitic drugs) are not included for lack of systematic reporting and collection of comprehensive data. Contents 1-Introduction ............................................................................................................................................... 3 1.1-Bacterial resistance to antibiotics is a major threat to human health .................................................. 3 1.2-Tracking resistance patterns is a major action in the fight against antibiotic resistance ..................... 3 2-Methods ..................................................................................................................................................... 3 2.1-Active surveillance .............................................................................................................................. 3 2.2-Antibiogram collection ....................................................................................................................... 3 2.3-Analysis .............................................................................................................................................. -
(12) Patent Application Publication (10) Pub. No.: US 2011/0136210 A1 Benjamin Et Al
US 2011013621 OA1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2011/0136210 A1 Benjamin et al. (43) Pub. Date: Jun. 9, 2011 (54) USE OF METHYLSULFONYLMETHANE Publication Classification (MSM) TO MODULATE MICROBIAL ACTIVITY (51) Int. Cl. CI2N 7/06 (2006.01) (75) Inventors: Rodney L. Benjamin, Camas, WA CI2N I/38 (2006.01) (US); Jeffrey Varelman, Moyie (52) U.S. Cl. ......................................... 435/238; 435/244 Springs, ID (US); Anthony L. (57) ABSTRACT Keller, Ashland, OR (US) Disclosed herein are methods of use of methylsulfonyl (73) Assignee: Biogenic Innovations, LLC methane (MSM) to modulate microbial activity, such as to enhance or inhibit the activity of microorganisms. In one (21) Appl. No.: 13/029,001 example, MSM (such as about 0.5% to 5% MSM) is used to enhance fermentation efficiency. Such as to enhance fermen (22) Filed: Feb. 16, 2011 tation efficiency associated with the production of beer, cider, wine, a biofuel, dairy product or any combination thereof. Related U.S. Application Data Also disclosed are in vitro methods for enhancing the growth of one or more probiotic microorganisms and methods of (63) Continuation of application No. PCT/US2010/ enhancing growth of a microorganism in a diagnostic test 054845, filed on Oct. 29, 2010. sample. Methods of inhibiting microbial activity are also disclosed. In one particular example, a method of inhibiting (60) Provisional application No. 61/294,437, filed on Jan. microbial activity includes selecting a medium that is suscep 12, 2010, provisional application No. 61/259,098, tible to H1N1 influenza contamination; and contacting the filed on Nov. -
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Beni-Suef BS. VET. MED. J. JULY 2010 VOL.20 NO.2 P.16-24 Veterinary Medical Journal An approach towards bacterial pathogens of zoonotic importance harbored by commensal rodents prevalent in Beni- Suef Governorate W. H. Hassan1, A. E. Abdel-Ghany2 1Department of Bacteriology, Mycology and Immunology, and 2 Department of Hygiene, Management and Zoonoses, Faculty of Veterinary Medicine, Beni-Suef University, Beni-Suef, Egypt This study was conducted in the period July 2009 through June 2010 to determine the role of commensal rodents in transmitting bacterial pathogens to man in Beni-Suef Governorate, Egypt. A total of 50 rats of various species were selected from both urban and rural areas at different localities. In the laboratory, rodent species were identified and bacteriological examination was performed. Seven types of samples were cultured from external and internal body parts of each rat. The identified rodent spp. included Rattus norvegicus (16%), Rattus rattus rattus (42%) and Rattus rattus frugivorus (42%). The results demonstrated that S. aureus, S. lentus, S. sciuri and S. xylosus were isolated from the examined rats at percentages of 8, 2, 6 and 6 %, respectively. Moreover, E. durans (2%), E. faecalis (12%), E. faecium (24%), E. gallinarum (4%), Aerococcus viridans (12%) and S. porcinus (2%) in addition to Lc. lactis lactis (4%), Leuconostoc sp. (2%) and Corynebacterium kutscheri (8%) were also harbored by the screened rodents. On the other hand, S. arizonae, E. coli, E. cloacae and E. sakazakii were isolated from the examined rats at percentages of 4, 8, 4 and 6 %, respectively. Besides, Proteus mirabilis (6%), Proteus vulgaris (2%), Providencia rettgeri (6%), P. -
Diversity and Composition of the Skin, Blood and Gut Microbiome in Rosacea—A Systematic Review of the Literature
microorganisms Review Diversity and Composition of the Skin, Blood and Gut Microbiome in Rosacea—A Systematic Review of the Literature Klaudia Tutka, Magdalena Zychowska˙ and Adam Reich * Department of Dermatology, Institute of Medical Sciences, Medical College of Rzeszow University, 35-055 Rzeszow, Poland; [email protected] (K.T.); [email protected] (M.Z.)˙ * Correspondence: [email protected]; Tel.: +48-605076722 Received: 30 August 2020; Accepted: 6 November 2020; Published: 8 November 2020 Abstract: Rosacea is a chronic inflammatory skin disorder of a not fully understood pathophysiology. Microbial factors, although not precisely characterized, are speculated to contribute to the development of the condition. The aim of the current review was to summarize the rosacea-associated alterations in the skin, blood, and gut microbiome, investigated using culture-independent, metagenomic techniques. A systematic review of the PubMed, Web of Science, and Scopus databases was performed, according to PRISMA (preferred reporting items for systematic review and meta-analyses) guidelines. Nine out of 185 papers were eligible for analysis. Skin microbiome was investigated in six studies, and in a total number of 115 rosacea patients. Blood microbiome was the subject of one piece of research, conducted in 10 patients with rosacea, and gut microbiome was studied in two papers, and in a total of 23 rosacea subjects. Although all of the studies showed significant alterations in the composition of the skin, blood, or gut microbiome in rosacea, the results were highly inconsistent, or even, in some cases, contradictory. Major limitations included the low number of participants, and different study populations (mainly Asians). Further studies are needed in order to reliably analyze the composition of microbiota in rosacea, and the potential application of microbiome modifications for the treatment of this dermatosis. -
Possible Detection of Pathogenic Bacterial Species Inhabiting Streams in Great Smoky Mountains National Park
POSSIBLE DETECTION OF PATHOGENIC BACTERIAL SPECIES INHABITING STREAMS IN GREAT SMOKY MOUNTAINS NATIONAL PARK A thesis presented to the faculty of the Graduate School of Western Carolina University in partial fulfillment of the requirement for the degree of Master of Science in Biology. By Kwame Agyapong Brown Director: Dr. Sean O’Connell Associate Professor of Biology and Biology Department Head Committee members: Dr. Sabine Rundle and Dr. Timothy Driscoll November 2016 ACKNOWLEDGEMENTS I would like to express my deepest gratitude to my adviser Dr. Sean O’Connell for his insightful mentoring and thoughtful contribution throughout this research. I would also like to acknowledge my laboratory teammates: Lisa Dye, Rob McKinnon, Kacie Fraser, and Tori Carlson for their diverse contributions to this project. This project would not have been possible without the generous support of the Western Carolina University Biology Department and stockroom; so I would like to thank the entire WCU biology faculty and Wesley W. Bintz for supporting me throughout my Masters program. Finally, I would like to thank my thesis committee members and reader: Dr. Sabine Rundle, Dr. Timothy Driscoll and Dr. Anjana Sharma for their contributions to this project. ii TABLE OF CONTENTS List of Tables ................................................................................................................................. iv List of Figures ..................................................................................................................................v -
Burkdiff: a Real-Time PCR Allelic Discrimination Assay for Burkholderia Pseudomallei and B
BurkDiff: A Real-Time PCR Allelic Discrimination Assay for Burkholderia Pseudomallei and B. mallei Jolene R. Bowers1*, David M. Engelthaler1, Jennifer L. Ginther2, Talima Pearson2, Sharon J. Peacock3, Apichai Tuanyok2, David M. Wagner2, Bart J. Currie4, Paul S. Keim1,2 1 Translational Genomics Research Institute, Flagstaff, Arizona, United States of America, 2 Northern Arizona University, Flagstaff, Arizona, United States of America, 3 Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand, 4 Menzies School of Health Research, Darwin, Australia Abstract A real-time PCR assay, BurkDiff, was designed to target a unique conserved region in the B. pseudomallei and B. mallei genomes containing a SNP that differentiates the two species. Sensitivity and specificity were assessed by screening BurkDiff across 469 isolates of B. pseudomallei, 49 isolates of B. mallei, and 390 isolates of clinically relevant non-target species. Concordance of results with traditional speciation methods and no cross-reactivity to non-target species show BurkDiff is a robust, highly validated assay for the detection and differentiation of B. pseudomallei and B. mallei. Citation: Bowers JR, Engelthaler DM, Ginther JL, Pearson T, Peacock SJ, et al. (2010) BurkDiff: A Real-Time PCR Allelic Discrimination Assay for Burkholderia Pseudomallei and B. mallei. PLoS ONE 5(11): e15413. doi:10.1371/journal.pone.0015413 Editor: Frank R. DeLeo, National Institutes of Health, United States of America Received July 26, 2010; Accepted September 12, 2010; Published November 12, 2010 Copyright: ß 2010 Bowers et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. -
New Drugs – Part Ii Jacqueline King, Pharm.D
7/7/2016 ANTIBIOTICS AND ANTIFUNGALS 2016 ANNUAL MEETING NEW DRUGS – PART II JACQUELINE KING, PHARM.D. TARA MCNULTY, CPHT, RPHT PHARMACY OPERATIONS SUPERVISOR PROJECT MANAGER UFHEALTH CANCER CENTER WELLCARE HEALTH PLANS, INC [email protected] [email protected] http://s3.amazonaws.com/readers/2010/05/28/bacteria_1.jpg 2016 ANNUAL MEETING DISCLOSURE BACTERIA • Jacqueline King, Pharm.D. • I do not have a vested interest in or affiliation with any corporate organization offering financial support or grant monies for this continuing education activity, or any affiliation with an organization whose philosophy could potentially bias my presentation • Tara, McNulty, CPhT, RPhT • I do not have a vested interest in or affiliation with any corporate organization offering financial support or grant monies for this continuing education activity, or any affiliation with an organization whose philosophy could potentially bias my presentation http://www.dbriers.com/tutorials/wp- content/uploads/2012/12/GramPositiveNegative21.jpg https://microbewiki.kenyon.edu/images/1/1b/Gram.jpg 2016 ANNUAL MEETING 2016 ANNUAL MEETING OBJECTIVES ANTIBIOTIC RESISTANCE • Explore new medications for the treatment of infectious diseases, including HIV • Antibiotic resistance occurs when an antibiotic has lost and Hepatitis C its ability to control or kill bacterial growth • Analyze the impact of the new agents within clinical practice • Causes of antibiotic resistance: Drugs not appropriately prescribed, not completing courses of antibiotics, • Utilize -
Outbreak of Carbapenem-Resistant Providencia Rettgeri in a Tertiary Hospital
This open-access article is distributed under Creative Commons licence CC-BY-NC 4.0. IN PRACTICE CLINICAL UPDATE Outbreak of carbapenem-resistant Providencia rettgeri in a tertiary hospital V S Tshisevhe,1,2 MB ChB, MBA, Dip HIV Man (SA), DTM&H; M R Lekalakala,3 BSc; MB ChB, DTM&H, MMed, PDIC; N Tshuma,4 BSc, MBA; S Janse van Rensburg,1 B Med Tech; N Mbelle,1,2 BSc, MSc, MB BCh, MMed, DTM&H, MAP, FCPath (SA) 1 Department of Medical Microbiology, Tshwane Academic Division, National Health Laboratory Service, Pretoria, South Africa 2 Department of Medical Microbiology, Faculty of Health Sciences, University of Pretoria, South Africa 3 Department of Medical Microbiology, Polokwane National Health Laboratory Service, and Department of Medical Microbiology, Faculty of Health Sciences, University of Limpopo, Polokwane, South Africa 4 Community AIDS Response, Johannesburg, South Africa Corresponding author: V S Tshisevhe ([email protected]) The emergence of resistance to multiple antimicrobial agents in pathogenic bacteria is a significant public health threat, as there are limited effective antimicrobial agents for infections caused by multidrug-resistant (MDR) bacteria. Several MDR bacteria are now frequently detected. Carbapenem resistance in Enterobacteriaceae is often plasmid mediated, necessitating stringent infection control practices. We describe an outbreak of carbapenem-resistant Providencia rettgeri involving 4 patients admitted to intensive care and high-care units at a tertiary hospital. Clinical and demographic characteristics of 4 patients with carbapenem-resistant P. rettgeri were documented. All P. rettgeri isolated in these cases had a carbapenem-resistant antibiogram, with resistance to imipenem, ertapenem and meropenem. These cases could be epidemiologically linked. -
Genome-Based Characterization of Two Colombian Clinical Providencia
Piza-Buitrago et al. BMC Microbiology (2020) 20:345 https://doi.org/10.1186/s12866-020-02030-z RESEARCH ARTICLE Open Access Genome-based characterization of two Colombian clinical Providencia rettgeri isolates co-harboring NDM-1, VIM-2, and other β-lactamases Adriana Piza-Buitrago1,2, Verónica Rincón1,2, John Donato1,2, Sandra Yamile Saavedra3, Carolina Duarte3, Jaime Morero3, Laurent Falquet4, María Teresa Reguero1,2 and Emiliano Barreto-Hernández1,2* Abstract Background: Providencia rettgeri is a nosocomial pathogen associated with urinary tract infections and related to Healthcare-Associated Infection (HAI). In recent years isolates producing New Delhi Metallo-β-lactamase (NDM) and other β-lactamases have been reported that reduce the efficiency of clinical antimicrobial treatments. In this study, we analyzed antibiotic resistance, the presence of resistance genes and the clonal relationship of two P. rettgeri isolates obtained from male patients admitted to the same hospital in Bogotá – Colombia, 2015. Results: Antibiotic susceptibility profile evaluated by the Kirby-Bauer method revealed that both isolates were resistant to third-generation carbapenems and cephalosporins. Whole-genome sequencing (Illumina HiSeq) followed by SPAdes assembling, Prokka annotation in combination with an in-house Python program and resistance gene detection by ResFinder identified the same six β-lactamase genes in both isolates: blaNDM-1, blaVIM-2, blaCTX-M-15, blaOXA-10, blaCMY-2 and blaTEM-1. Additionally, various resistance genes associated with antibiotic target alteration (arnA, PmrE, PmrF, LpxA, LpxC, gyrB, folP, murA, rpoB, rpsL, tet34) were found and four efflux pumps (RosAB, EmrD, mdtH and cmlA). The additional resistance to gentamicin in one of the two isolates could be explained by a detected SNP in CpxA (Cys191Arg) which is involved in the stress response of the bacterial envelope. -
Prevalence of Hospital Acquired Infection and Antibiotic Trends in ICU in Southern India
Int.J.Curr.Microbiol.App.Sci (2020) 9(11): 723-738 International Journal of Current Microbiology and Applied Sciences ISSN: 2319-7706 Volume 9 Number 11 (2020) Journal homepage: http://www.ijcmas.com Original Research Article https://doi.org/10.20546/ijcmas.2020.911.087 Prevalence of Hospital Acquired Infection and Antibiotic Trends in ICU in Southern India Umar Rashid Khan, Rajeev Saxena, Ruby Dass, K. K. Lahiri. S. V. Wankhede and Sana Rafiq Khuroo* Kashibai Navle Medical College & Hospital Narhe Pune, India *Corresponding author ABSTRACT 300 patients were screened in ICUs of a tertiary care hospital in southern India to detect the rate of Hospital Acquired Infection (HAI) and antibiotic trends. Clinical samples received in the laboratory were processed as per CLSI (Clinical laboratory standard institute) guidelines. Patients were followed up to 72 hours post discharge. Markers of K e yw or ds infection were noted and correlated with the findings in our laboratory. Kirby bauer antibiotic susceptibility test (ABST) was used for isolates with special reference to Hospital Acquired Extended Spectrum Beta lactamase (ESBL) production and Methicillin Resistant Infection , Staphylococcus aureus (MRSA). 10.7% were detected to have HAI during their stay in the ICU ICU. Males above 30 years showed higher prevalence of HAI. Respiratory tract infection (RTI) was the commonest nosocomial infection detected in 56.3% of HAI cases, of which Article Info 19% were VAP (Ventilator Associated Pneumonia). Urinary tract infection (UTI) was 25% being the second commonest, followed by Blood stream infection (BSI) 12.5%. The Accepted: most common organism isolated was Acinetobacter baumannii 33.4%, followed by 07 October 2020 Available Online: Klebsiella pneumoniae 19.4%, & Escherichia coli (E.