Recent Proposals on Nomenclature of Dinoflagellates
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Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
Checklist of Mediterranean Free-Living Dinoflagellates
Botanica Marina Vol. 46, 2003, pp. 215–242 © 2003 by Walter de Gruyter · Berlin · New York Checklist of Mediterranean Free-living Dinoflagellates F. Gómez Department of Aquatic Biosciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo, Tokyo 113-8657, Japan, [email protected] An annotated checklist of the free-living dinoflagellates (Dinophyceae) of the Mediterranean Sea, based on literature records, is given. The distribution of 673 species in 9 Mediterranean sub-basins is reported. The number of taxa among the sub-basins was as follows: Ligurian (496 species), Balear-Provençal (360), Adri- atic (322), Tyrrhenian (284), Ionian (283), Levantine (268), Aegean (182), Alborán (179) and Algerian Seas (151). Introduction cionellum Defrandre, Pentapharsodinium Indelicato et Loeblich III and Preperidinium Mangin have been The oligotrophic conditions in the Mediterranean added to the Peridiniaceae. Sea could favour the richness of dinoflagellates, Synonyms have been tracked down and relocated typical organisms of oligotrophic waters. Intensive in order to avoid duplicate entries. Synonyms, which studies have been made by Jörgensen (1920, have not been quoted in the world literature during 1923), Schiller (1931–37) (Adriatic Sea), Pavillard the last decades, are not reported. Because of space (1905–1937) (Gulf of Lions and Monaco), Halim limitation, not all the references reporting each (1960) (Villefranche and Alexandria), Rampi species for each area have been included. Only when (1939–1969) (Ligurian Sea) and Margalef (1945– a taxon is reported in less than 3 of the 9 Mediter- 1995) (Spanish coasts). However a catalogue of the ranean sub-basins considered, is the source of the dinoflagellate species recorded is not available. -
SYSTEMATICS of the MEGADIVERSE SUPERFAMILY GELECHIOIDEA (INSECTA: LEPIDOPTEA) DISSERTATION Presented in Partial Fulfillment of T
SYSTEMATICS OF THE MEGADIVERSE SUPERFAMILY GELECHIOIDEA (INSECTA: LEPIDOPTEA) DISSERTATION Presented in Partial Fulfillment of the Requirements for The Degree of Doctor of Philosophy in the Graduate School of The Ohio State University By Sibyl Rae Bucheli, M.S. ***** The Ohio State University 2005 Dissertation Committee: Approved by Dr. John W. Wenzel, Advisor Dr. Daniel Herms Dr. Hans Klompen _________________________________ Dr. Steven C. Passoa Advisor Graduate Program in Entomology ABSTRACT The phylogenetics, systematics, taxonomy, and biology of Gelechioidea (Insecta: Lepidoptera) are investigated. This superfamily is probably the second largest in all of Lepidoptera, and it remains one of the least well known. Taxonomy of Gelechioidea has been unstable historically, and definitions vary at the family and subfamily levels. In Chapters Two and Three, I review the taxonomy of Gelechioidea and characters that have been important, with attention to what characters or terms were used by different authors. I revise the coding of characters that are already in the literature, and provide new data as well. Chapter Four provides the first phylogenetic analysis of Gelechioidea to include molecular data. I combine novel DNA sequence data from Cytochrome oxidase I and II with morphological matrices for exemplar species. The results challenge current concepts of Gelechioidea, suggesting that traditional morphological characters that have united taxa may not be homologous structures and are in need of further investigation. Resolution of this problem will require more detailed analysis and more thorough characterization of certain lineages. To begin this task, I conduct in Chapter Five an in- depth study of morphological evolution, host-plant selection, and geographical distribution of a medium-sized genus Depressaria Haworth (Depressariinae), larvae of ii which generally feed on plants in the families Asteraceae and Apiaceae. -
Patrons De Biodiversité À L'échelle Globale Chez Les Dinoflagellés
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emerciements* ! Remerciements* A!l'issue!de!ce!travail!de!recherche!et!de!sa!rédaction,!j’ai!la!preuve!que!la!thèse!est!loin!d'être!un!travail! solitaire.! En! effet,! je! n'aurais! jamais! pu! réaliser! ce! travail! doctoral! sans! le! soutien! d'un! grand! nombre! de! personnes!dont!l’amitié,!la!générosité,!la!bonne!humeur%et%l'intérêt%manifestés%à%l'égard%de%ma%recherche%m'ont% permis!de!progresser!dans!cette!phase!délicate!de!«!l'apprentiGchercheur!».! -
Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile (Supplement Data)
Protocols for monitoring Harmful Algal Blooms for sustainable aquaculture and coastal fisheries in Chile (Supplement data) Provided by Kyoko Yarimizu, et al. Table S1. Phytoplankton Naming Dictionary: This dictionary was constructed from the species observed in Chilean coast water in the past combined with the IOC list. Each name was verified with the list provided by IFOP and online dictionaries, AlgaeBase (https://www.algaebase.org/) and WoRMS (http://www.marinespecies.org/). The list is subjected to be updated. Phylum Class Order Family Genus Species Ochrophyta Bacillariophyceae Achnanthales Achnanthaceae Achnanthes Achnanthes longipes Bacillariophyta Coscinodiscophyceae Coscinodiscales Heliopeltaceae Actinoptychus Actinoptychus spp. Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Akashiwo Akashiwo sanguinea Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium spp. Ochrophyta Bacillariophyceae Naviculales Amphipleuraceae Amphiprora Amphiprora spp. Bacillariophyta Bacillariophyceae Thalassiophysales Catenulaceae Amphora Amphora spp. Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Anabaenopsis Anabaenopsis milleri Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema Anagnostidinema amphibium Anagnostidinema Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema lemmermannii Cyanobacteria Cyanophyceae Oscillatoriales Microcoleaceae Annamia Annamia toxica Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Aphanizomenon Aphanizomenon flos-aquae -
Differentiating Two Closely Related Alexandrium Species Using Comparative Quantitative Proteomics
toxins Article Differentiating Two Closely Related Alexandrium Species Using Comparative Quantitative Proteomics Bryan John J. Subong 1,2,* , Arturo O. Lluisma 1, Rhodora V. Azanza 1 and Lilibeth A. Salvador-Reyes 1,* 1 Marine Science Institute, University of the Philippines- Diliman, Velasquez Street, Quezon City 1101, Philippines; [email protected] (A.O.L.); [email protected] (R.V.A.) 2 Department of Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo City, Tokyo 113-8654, Japan * Correspondence: [email protected] (B.J.J.S.); [email protected] (L.A.S.-R.) Abstract: Alexandrium minutum and Alexandrium tamutum are two closely related harmful algal bloom (HAB)-causing species with different toxicity. Using isobaric tags for relative and absolute quantita- tion (iTRAQ)-based quantitative proteomics and two-dimensional differential gel electrophoresis (2D-DIGE), a comprehensive characterization of the proteomes of A. minutum and A. tamutum was performed to identify the cellular and molecular underpinnings for the dissimilarity between these two species. A total of 1436 proteins and 420 protein spots were identified using iTRAQ-based proteomics and 2D-DIGE, respectively. Both methods revealed little difference (10–12%) between the proteomes of A. minutum and A. tamutum, highlighting that these organisms follow similar cellular and biological processes at the exponential stage. Toxin biosynthetic enzymes were present in both organisms. However, the gonyautoxin-producing A. minutum showed higher levels of osmotic growth proteins, Zn-dependent alcohol dehydrogenase and type-I polyketide synthase compared to the non-toxic A. tamutum. Further, A. tamutum had increased S-adenosylmethionine transferase that may potentially have a negative feedback mechanism to toxin biosynthesis. -
Microzooplankton Composition and Dynamics in Lake Erie
MICROZOOPLANKTON COMPOSITION AND DYNAMICS IN LAKE ERIE A Thesis Presented to The Graduate Faculty of the University of Akron In Partial Fulfillment of the Requirements for the Degree Master of Science Kenneth M. Moats May 2006 MICROZOOPLANKTON COMPOSITION AND DYNAMICS IN LAKE ERIE Kenneth M. Moats Thesis Approved: Accepted: ______________________________ ______________________________ Advisor Department Chair Peter J. Lavrentyev Richard L. Londraville ______________________________ ______________________________ Committee Member Dean of the College R. Joel Duff Ronald F. Levant ______________________________ ______________________________ Committee Member Dean of the Graduate School David M. Klarer George R. Newkome ______________________________ Date ii ACKNOWLEDGEMENTS I would like to thank my graduate advisor Dr. Peter Lavrentyev for introducing me to the study of aquatic microbial ecology and for the opportunity to conduct this study. The importance of his guidance and expertise in every aspect of this research cannot be understated. I would also like to thank him for the patience, support, and encouragement he provided throughout my tenure. I would also like to thank the other members of my advisory committee, Dr. Joel Duff and Dr. David Klarer, for the helpful advice and comments offered during the preparation of this manuscript. I would like to extend my thanks to Dr. Klarer and the staff of Old Woman Creek NERR for logistical support and the sharing of unpublished data on Old Woman Creek. I thank Dr. Frank Jochem of Florida International University, Dr. Henry Vanderploeg and Dr. Stuart Ludsin of Great Lakes Environmental Research Laboratory, and the Captain and crew of the US EPA R/V Lake Guardian for logistical support during the Lake Erie experiments. -
Evolution and Comparative Morphology of the Euglenophyte
EVOLUTION AND COMPARATIVE MORPHOLOGY OF THE EUGLENOPHYTE PLASTID by PATRICK JERRY PAUL BROWN (Under the Direction of Mark A. Farmer) ABSTRACT My doctoral research centered on understanding the evolution of the euglenophyte protists, with special attention paid to their plastids. The euglenophytes are a widely distributed group of euglenid protists that have acquired a chloroplast via secondary symbiogenesis. The goals of my research were to 1) test the efficacy of plastid morphological and ultrastructural characters in phylogenetic analysis; 2) understand the process of plastid development and partitioning in the euglenophytes; 3) to use a plastid- encoded protein gene to determine a euglenophyte phylogeny; and 4) to perform a multi- gene analysis to uncover clues about the origins of the euglenophyte plastid. My work began with an alpha-taxonomic study that redefined the rare euglenophyte Euglena rustica. This work not only validly circumscribed the species, but also noted novel features of its habitat, cyclic migration habits, and cellular biology. This was followed by a study of plastid morphology and development in a number of diverse euglenophytes. The results of this study showed that the plastids of euglenophytes undergo drastic changes in morphology and ultrastructure over the course of a single cell division cycle. I concluded that there are four main classes of plastid development and partitioning in the euglenophytes, and that the class a given species will use is dependant on its interphase plastid morphology and the rigidity of the cell. The discovery of the class IV partitioning strategy in which cells with only one or very few plastids fragment their plastids prior to cell division was very significant. -
Description of Coleophora Oreiosella Baldizzone, Sp. N. And
SHILAP Revista de Lepidopterología ISSN: 0300-5267 ISSN: 2340-4078 [email protected] Sociedad Hispano-Luso-Americana de Lepidopterología España Baldizzone, G. Description of Coleophora oreiosella Baldizzone, sp. n. and new records on the distribution of some European Coleophoridae (Lepidoptera: Coleophoridae) SHILAP Revista de Lepidopterología, vol. 47, no. 186, 2019, May-August, pp. 269-277 Sociedad Hispano-Luso-Americana de Lepidopterología España Available in: https://www.redalyc.org/articulo.oa?id=45561111015 How to cite Complete issue Scientific Information System Redalyc More information about this article Network of Scientific Journals from Latin America and the Caribbean, Spain and Journal's webpage in redalyc.org Portugal Project academic non-profit, developed under the open access initiative SHILAP Revta. lepid., 47 (186) junio 2019: 269-277 eISSN: 2340-4078 ISSN: 0300-5267 Description of Coleophora oreiosella Baldizzone, sp. n. and new records on the distribution of some European Coleophoridae (Lepidoptera: Coleophoridae) G. Baldizzone* Abstract A new species of the genus Coleophora Hübner, 1822, C. oreiosella Baldizzone, sp. n., known to be found only in the Sierra Nevada, Spain, is described. New data on the distribution of some European species are provided. The male of C. depunctella Toll, 1961, is shown for the first time. KEY WORDS: Lepidoptera, Coleophoridae, Coleophora, new species, new records, Europa. Descripción de Coleophora oreiosella Baldizzone, sp. n. y nuevos registros sobre la distribución de algunos Coleophoridae europeos (Lepidoptera: Coleophoridae) Resumen Se describe una nueva especie del género Coleophora Hübner, 1822, C. oreiosella Baldizzone sp. n., sólo conocida de Sierra Nevada, España. Se proporcionan nuevos datos sobre la distribución de algunas especies europeas. -
Subunit Rrna Genes of the Genus Euglena Ehrenberg
International Journal of Systematic and Evolutionary Microbiology (2001), 51, 773–781 Printed in Great Britain Phylogenetic analysis of chloroplast small- subunit rRNA genes of the genus Euglena Ehrenberg Department of Plant Rafał Milanowski, Boz0 ena Zakrys! and Jan Kwiatowski Systematics and Geography, Warsaw University, Al. Ujazdowskie 4, PL-00-478 ! Warszawa, Poland Author for correspondence: Boz0 ena Zakrys. Tel: j48 22 628 2595. Fax: j48 22 622 6646. e-mail: zakrys!mercury.ci.uw.edu.pl Almost complete sequences of plastid SSU rDNA (16S rDNA) from 17 species ! belonging to the order Euglenales (sensu Nemeth, 1997; Shi et al., 1999) were determined and used to infer phylogenetic relationships between 10 species of Euglena, three of Phacus, and one of each of Colacium, Lepocinclis, Strombomonas, Trachelomonas and Eutreptia. The maximum-parsimony (MP), maximum-likelihood (ML) and distance analyses of the unambiguously aligned sequence fragments imply that the genus Euglena is not monophyletic. Parsimony and distance methods divide Euglenaceae into two sister groups. One comprises of representatives from the subgenera Phacus, Lepocinclis and ! Discoglena (sensu Zakrys, 1986), whereas the other includes members of ! Euglena and Calliglena subgenera (sensu Zakrys, 1986), intermixed with representatives of Colacium, Strombomonas and Trachelomonas. In all analyses subgenera Euglena – together with Euglena polymorpha (representative of the subgenus Calliglena) – and Discoglena – together with Phacus and Lepocinclis – form two well-defined clades. The data clearly indicate that a substantial revision of euglenoid systematics is very much required, nevertheless it must await while more information can be gathered, allowing resolution of outstanding relationships. Keywords: chloroplast SSU rDNA, Euglena, Calliglena, Discoglena, molecular phylogeny INTRODUCTION The genus Euglena consists of organisms highly diversified with respect to cell architecture. -
{Download PDF} Freshwater Life
FRESHWATER LIFE PDF, EPUB, EBOOK Malcolm Greenhalgh,Denys Ovenden | 256 pages | 30 Mar 2007 | HarperCollins Publishers | 9780007177776 | English | London, United Kingdom Freshwater Life PDF Book Classes of organisms found in marine ecosystems include brown algae , dinoflagellates , corals , cephalopods , echinoderms , and sharks. Gastrotrichs phylum: Gastrotricha are small and flat worms very hairy whose body ends with two quite large appendixes. In fact, many of them are equipped with one or two or even more flagella. But this was no typical love story. Figure 9 - Pediastrum sp. Once it leaves the freshwater, it does not eat, and so after it spawns its energy reserves are used up and it dies. You can see that life on Earth survives on what is essentially only a "drop in the bucket" of Earth's total water supply! Anisonema Figure 7 is an alga lacking in chloroplasts which feeds on organic detritus. Figure 13 - Spirogyrae in conjugation. Download as PDF Printable version. The simple study of animal behaviour whilst sitting on the edge of a pond is also useful. Adult freshwater snails are capable of exploits which are difficult to imagine. They are also known as Cyanophyceae because of their blue- green colour. Wetlands can be part of the lentic system, as they form naturally along most lake shores, the width of the wetland and littoral zone being dependent upon the slope of the shoreline and the amount of natural change in water levels, within and among years. Survey Manual. This region is called the thermocline. Cite this article Pick a style below, and copy the text for your bibliography. -
"Phycology". In: Encyclopedia of Life Science
Phycology Introductory article Ralph A Lewin, University of California, La Jolla, California, USA Article Contents Michael A Borowitzka, Murdoch University, Perth, Australia . General Features . Uses The study of algae is generally called ‘phycology’, from the Greek word phykos meaning . Noxious Algae ‘seaweed’. Just what algae are is difficult to define, because they belong to many different . Classification and unrelated classes including both prokaryotic and eukaryotic representatives. Broadly . Evolution speaking, the algae comprise all, mainly aquatic, plants that can use light energy to fix carbon from atmospheric CO2 and evolve oxygen, but which are not specialized land doi: 10.1038/npg.els.0004234 plants like mosses, ferns, coniferous trees and flowering plants. This is a negative definition, but it serves its purpose. General Features Algae range in size from microscopic unicells less than 1 mm several species are also of economic importance. Some in diameter to kelps as long as 60 m. They can be found in kinds are consumed as food by humans. These include almost all aqueous or moist habitats; in marine and fresh- the red alga Porphyra (also known as nori or laver), an water environments they are the main photosynthetic or- important ingredient of Japanese foods such as sushi. ganisms. They are also common in soils, salt lakes and hot Other algae commonly eaten in the Orient are the brown springs, and some can grow in snow and on rocks and the algae Laminaria and Undaria and the green algae Caulerpa bark of trees. Most algae normally require light, but some and Monostroma. The new science of molecular biology species can also grow in the dark if a suitable organic carbon has depended largely on the use of algal polysaccharides, source is available for nutrition.