Genetics of Dothistromin Biosynthesis of Dothistroma Septosporum: an Update
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Monocyclic Components for Evaluating Disease Resistance to Cercospora Arachidicola and Cercosporidium Personatum in Peanut
Monocyclic Components for Evaluating Disease Resistance to Cercospora arachidicola and Cercosporidium personatum in Peanut by Limin Gong A dissertation submitted to the Graduate Faculty of Auburn University in partial fulfillment of the requirements for the Degree of Doctor of Philosophy Auburn, Alabama August 6, 2016 Keywords: monocyclic components, disease resistance Copyright 2016 by Limin Gong Approved by Kira L. Bowen, Chair, Professor of Entomology and Plant Pathology Charles Y. Chen, Associate Professor of Crop, Soil and Environmental Sciences John F. Murphy, Professor of Entomology and Plant Pathology Jeffrey J. Coleman, Assisstant Professor of Entomology and Plant Pathology ABSTRACT Cultivated peanut (Arachis hypogaea L.) is an economically important crop that is produced in the United States and throughout the world. However, there are two major fungal pathogens of cultivated peanuts, and they each contribute to substantial yield losses of 50% or greater. The pathogens of these diseases are Cercospora arachidicola which causes early leaf spot (ELS), and Cercosporidium personatum which causes late leaf spot (LLS). While fungicide treatments are fairly effective for leaf spot management, disease resistance is still the best strategy. Therefore, it is important to evaluate and compare different genotypes for their disease resistance levels. The overall goal of this study was to determine resistance levels of different peanut genotypes to ELS and LLS. The peanut genotypes (Chit P7, C1001, Exp27-1516, Flavor Runner 458, PI 268868, and GA-12Y) used in this study include two genetically modified lines (Chit P7 and C1001) that over-expresses a chitinase gene. This overall goal was addressed with three specific objectives: 1) determine suitable conditions for pathogen culture and spore production in vitro; 2) determine suitable conditions for establishing infection in the greenhouse; 3) compare ELS and LLS disease reactions of young plants to those of older plants. -
Dothistroma Needle Blight of Pines by the Bartlett Lab Staff Directed by Kelby Fite, Phd
RESEARCH LABORATORY TECHNICAL REPORT Dothistroma Needle Blight of Pines By the Bartlett Lab Staff Directed by Kelby Fite, PhD Dothistroma Needle Blight (DNB), also known as Red Band Needle Blight, is a serious disease of pines. It is caused by the fungus Mycosphaerella pini. Dothistroma septosporum and is the asexual stage of the fungus, which is commonly found on diseased needles. DNB has been reported from over 60 countries infecting over 80 different species of pine and several other non-pine species. Austrian, Monterey, and Ponderosa pine are the pine species most susceptible to this disease. DNB infects needles of all ages, causing a reduction in photosynthetic capacity and premature mortality. Symptoms these conditions, the spores landing on the new needles germinate and penetrate the tissue through Symptoms of the disease first appear as light green stomata in only a few days. Fruiting bodies will lesions on needles. Lesions eventually turn tan to eventually erupt through the needle surface and reddish brown as the disease develops. It is within these red bands that the small, black, spore-containing Figure 2: Symptoms on canopy fruiting bodies tend to be found with symptoms most apparent in June and July (Figure 1). A distinct transition line forms between the necrotic lesion and healthy green tissue. Needle tips may die back while the bases remain green in severe cases. Premature needle drop occurs, leading to gradual thinning of the canopy. Symptoms are most severe in portions of the canopy located within 6 to 10 feet of the ground (Figure 2). Figure 1: Fruiting bodies on needles Disease Cycle The infected needles on the tree and the fallen needles on the ground serve as sources of inoculum. -
Dothistroma Septosporum
Copyright is owned by the Author of the thesis. Permission is given for a copy to be downloaded by an individual for the purpose of research and private study only. The thesis may not be reproduced elsewhere without the permission of the Author. Secondary metabolism of the forest pathogen Dothistroma septosporum A thesis presented in the partial fulfilment of the requirements for the degree of Doctor of Philosophy (PhD) in Genetics at Massey University, Manawatu, New Zealand Ibrahim Kutay Ozturk 2016 ABSTRACT Dothistroma septosporum is a fungus causing the disease Dothistroma needle blight (DNB) on more than 80 pine species in 76 countries, and causes serious economic losses. A secondary metabolite (SM) dothistromin, produced by D. septosporum, is a virulence factor required for full disease expression but is not needed for the initial formation of disease lesions. Unlike the majority of fungal SMs whose biosynthetic enzyme genes are arranged in a gene cluster, dothistromin genes are dispersed in a fragmented arrangement. Therefore, it was of interest whether D. septosporum has other SMs that are required in the disease process, as well as having SM genes that are clustered as in other fungi. Genome sequencing of D. septosporum revealed that D. septosporum has 11 SM core genes, which is fewer than in closely related species. In this project, gene cluster analyses around the SM core genes were done to assess if there are intact or other fragmented gene clusters. In addition, one of the core SM genes, DsNps3, that was highly expressed at an early stage of plant infection, was knocked out and the phenotype of this mutant was analysed. -
Study of Fungi- SBT 302 Mycology
MYCOLOGY DEPARTMENT OF PLANT SCIENCES DR. STANLEY KIMARU 2019 NOMENCLATURE-BINOMIAL SYSTEM OF NOMENCLATURE, RULES OF NOMENCLATURE, CLASSIFICATION OF FUNGI. KEY TO DIVISIONS AND SUB-DIVISIONS Taxonomy and Nomenclature Nomenclature is the naming of organisms. Both classification and nomenclature are governed by International code of Botanical Nomenclature, in order to devise stable methods of naming various taxa, As per binomial nomenclature, genus and species represent the name of an organism. Binomials when written should be underlined or italicized when printed. First letter of the genus should be capital and is commonly a noun, while species is often an adjective. An example for binomial can be cited as: Kingdom = Fungi Division = Eumycota Subdivision = Basidiomycotina Class = Teliomycetes Order = Uredinales Family = Pucciniaceae Genus = Puccinia Species = graminis Classification of Fungi An outline of classification (G.C. Ainsworth, F.K. Sparrow and A.S. Sussman, The Fungi Vol. IV-B, 1973) Key to divisions of Mycota Plasmodium or pseudoplasmodium present. MYXOMYCOTA Plasmodium or pseudoplasmodium absent, Assimilative phase filamentous. EUMYCOTA MYXOMYCOTA Class: Plasmodiophoromycetes 1. Plasmodiophorales Plasmodiophoraceae Plasmodiophora, Spongospora, Polymyxa Key to sub divisions of Eumycota Motile cells (zoospores) present, … MASTIGOMYCOTINA Sexual spores typically oospores Motile cells absent Perfect (sexual) state present as Zygospores… ZYGOMYCOTINA Ascospores… ASCOMYCOTINA Basidiospores… BASIDIOMYCOTINA Perfect (sexual) state -
Dothistroma Needle Blight on High Altitude Pine Forests in Montenegro
-/D]DUHYLüHWDO%DOWLF)RUHVWU\YRO ,661 Dothistroma Needle Blight on High Altitude Pine Forests in Montenegro 1 2 3 JELENA LAZAREVIĆ *, KATERYNA DAVYDENKO AND HANNA MILLBERG 1 University of Montenegro Biotechnical Faculty, Mihaila Lalića 1, 81 000 Podgorica, Montenegro, 2Ukrainian Research Institute of Forestry & Forest Melioration, Pushkinska street, 86 Kharkov 61024, Ukraine 3Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Almas allé 5, 756 51 Uppsala Sweden * Corresponding author: [email protected], tel. +382 20 268 434 Lazarević, J., Davydenko, K. and Millberg, H. 2017. Dothistroma Needle Blight on High Altitude Pine Forests in Montenegro. Baltic Forestry 23(1): 294-302. Abstract Dothistroma needle blight (DNB) is one of the most serious and widespread needle diseases of pines. Its current distribu- tion was investigated in high altitude native and planted pine forests in Montenegro. The suitability for the disease under different climatic conditions is discussed. Using molecular methods, polymerase chain reaction (PCR) with species specific primers, Dothistroma septosporum (Dorog) M. Morelet was detected from needles of Pinus nigra Arn., Pinus nigra ‘Dalmatica’ (Visiani) Franco, Pinus sylvestris L., Pinus mugo Turra, Pinus heldreichii H. Christ, Pinus peuce Griseb. and Picea abies Karst. in differ- ent parts of Montenegro, at altitudes between 800 and 2150 m. Dothistroma pini Hulbary was detected from P. sylvestris, P. nigra and P. mugo from restricted area in Northwestern part of Montenegro at altitudes between 800 and 1850 m. This is the first report of DNB on P. mugo and P. abies in Montenegro, and the first time that D. septosporum was detected from P.nigra ‘Dal- matica’. -
Early Detection of Airborne Inoculum of Nothopassalora Personata in Spore Trap Samples from Peanut Fields Using Quantitative PCR
plants Article Early Detection of Airborne Inoculum of Nothopassalora personata in Spore Trap Samples from Peanut Fields Using Quantitative PCR Misbakhul Munir 1, Hehe Wang 1, Nicholas S. Dufault 2 and Daniel J. Anco 1,* 1 Department of Plant and Environment Science, Clemson University, Edisto Research and Education Center, Blackville, SC 29817, USA; [email protected] (M.M.); [email protected] (H.W.) 2 Department of Plant Pathology, University of Florida, Gainesville, FL 32611, USA; nsdufault@ufl.edu * Correspondence: [email protected] Received: 15 September 2020; Accepted: 7 October 2020; Published: 9 October 2020 Abstract: A quantitative PCR (qPCR)-assay was developed to detect airborne inoculum of Nothopassalora personata, causal agent of late leaf spot (LLS) on peanut, collected with a modified impaction spore trap. The qPCR assay was able to consistently detect as few as 10 spores with purified DNA and 25 spores based on crude DNA extraction from rods. In 2019, two spore traps were placed in two peanut fields with a history of LLS. Sampling units were replaced every 2 to 4 days and tested with the developed qPCR assay, while plots were monitored for symptom development. The system detected inoculum 35 to 56 days before visual symptoms developed in the field, with detection related to environmental parameters affecting pathogen life-cycle and disease development. This study develops the framework of the qPCR spore trap system and represents the initial steps towards validation of the performance of the system for use as a decision support tool to complement integrated management of LLS. Keywords: specific primers; Cercosporidium personatum; spore collection; Arachis hypogaea 1. -
Investigation of the Phytoalexin Response of Arachis Hypogaea L
INVESTIGATION OF THE PHYTOALEXIN RESPONSE OF ARACHIS HYPOGAEA L. AND ITS POSSIBLE INVOLVEMENT IN RESISTANCE TO FOLIAR PATHOGENS by CHRISTINE EDWARDS UNIVERSITY COLLEGE LONDON Submitted to the University of London for PhD ProQuest Number: 10018700 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate the deletion. uest. ProQuest 10018700 Published by ProQuest LLC(2016). Copyright of the Dissertation is held by the Author. All rights reserved. This work is protected against unauthorized copying under Title 17, United States Code. Microform Edition © ProQuest LLC. ProQuest LLC 789 East Eisenhower Parkway P.O. Box 1346 Ann Arbor, Ml 48106-1346 Dedicated to my parents ACKNOWLEDGEMENTS I would like to thank Richard Strange for his patience and support. I would also like to thank Annette Slade, Dr. Graham Wallace and Dr. Ivor Lewis for mass spectrometry in various forms. I am grateful to Chris Brierly for tending the groundnuts at Nuffield Lodge gardens. Many thanks to my friends for their encouragement and tolerance. il TITLE: Investigation of the phytoalexin response of Arachis hypogaea L. and its possible Involvement In resistance to foliar pathogens. Natural infection of groundnut foliage with Cercospora arachidicola and Phoma arachidicola resulted in the accumulation of at least six antifungal compounds. The dominant antifungal compound was the pterocarpan medicarpin. Abiotic agents including ultra-violet irradiation, salts of heavy metals and detergents were used to elicit medicarpin and other antifungal compounds. -
University of Florida Thesis Or Dissertation
FIELD EFFICACY OF QUINONE OUTSIDE INHIBITOR AND DEMETHYLATION INHIBITOR FUNGICIDES ON PEANUT FOLIAR DISEASES IN FLORIDA By WAEL M. ELWAKIL A THESIS PRESENTED TO THE GRADUATE SCHOOL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE UNIVERSITY OF FLORIDA 2018 © 2018 Wael M. Elwakil To my Mom ACKNOWLEDGMENTS I thank my family for their emotional support and encouragement during this journey of pursuing my master’s. I owe a great debt of gratitude to my masters and doctorate advisor Dr. Nicholas S. Dufault of the Plant Pathology Department at the University of Florida for his continuous support, advice, and mentoring. Dr. Dufault is undeniably one of the most respectable and generous people that I have ever encountered in my life. I would like also to acknowledge Mrs. Kristin Beckham for her help during the various steps of this project. I also thank Dr. Rebecca Barocco for assisting with the field trials setup, maintenance, and disease ratings. 4 TABLE OF CONTENTS page ACKNOWLEDGMENTS .................................................................................................. 4 LIST OF TABLES ............................................................................................................ 7 LIST OF FIGURES .......................................................................................................... 8 LIST OF ABBREVIATIONS ............................................................................................. 9 ABSTRACT .................................................................................................................. -
Molecular Approaches to Detect and Control Cercospora Kikuchii In
Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School 2012 Molecular Approaches to Detect and Control Cercospora kikuchii in Soybeans Ashok Kumar Chanda Louisiana State University and Agricultural and Mechanical College, [email protected] Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Part of the Plant Sciences Commons Recommended Citation Chanda, Ashok Kumar, "Molecular Approaches to Detect and Control Cercospora kikuchii in Soybeans" (2012). LSU Doctoral Dissertations. 3002. https://digitalcommons.lsu.edu/gradschool_dissertations/3002 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. MOLECULAR APPROACHES TO DETECT AND CONTROL CERCOSPORA KIKUCHII IN SOYBEANS A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College In partial fulfillment of the requirements for the degree of Doctor of Philosophy in The Department of Plant Pathology and Crop Physiology by Ashok Kumar Chanda B.S., Acharya N. G. Ranga Agricultural University, 2001 M.S., Acharya N. G. Ranga Agricultural University, 2004 August 2012 DEDICATION This work is dedicated to my Dear Mother, PADMAVATHI Dear Father, MADHAVA RAO Sweet Wife, MALA Little Angel, HAMSINI ii ACKNOWLEDGEMENTS I would like to express my sincere gratitude to my advisors Dr. Zhi-Yuan Chen and Dr. Raymond Schneider, for giving me the opportunity to pursue this doctoral program, valuable guidance throughout my research as well as freedom to choose my work, kindness and constant encouragement, and teaching me how to become a molecular plant pathologist. -
Red Band Needle Blight of Conifers in Britain
Research Note Red band needle blight of conifers in Britain Anna Brown and Joan Webber June 2008 Red band needle blight is an economically important disease affecting a number of coniferous trees, in particular pines. The disease has a world-wide distribution but until recently it was mainly of concern in the southern hemisphere. In much of the world, including Britain, it is caused by the fungus Dothistroma septosporum . Red band needle blight causes premature needle defoliation which results in the loss of timber yield and, in severe cases, tree mortality. Since the late 1990s the incidence of the disease has increased dramatically in Britain, particularly on Corsican pine ( Pinus nigra ssp. laricio ), and due to the extent and severity of the disease on this species, there is now a five-year planting moratorium of it on the Forestry Commission estate. More recently there have been reports of the disease causing damage to lodgepole pine in Scotland and it has also been reported on Scots pine – although it rarely appears to be causing significant damage to this species. Reasons for the increase in disease incidence are unclear but could be due to increased rainfall in spring and summer coupled with a trend towards warmer springs, optimising conditions for spore dispersal and infection. Such conditions may become more prevalent in Britain over the next 20 years if current trends in climate change continue. In Britain disease management is currently focused on silvicultural measures to reduce inoculum loads and the use of alternative, less susceptible species in future rotations. FCRN002 1 Introduction moratorium of this species on the Forestry Commission estate. -
Dothistroma Isolation and Molecular Identification Methods
COST ACTION FP1102 Determining Invasiveness and Risk of Dothistroma Training School May 2012, Brno, Czech Republic Detection and Diagnostics of Dothistroma Dothistroma Isolation and molecular identification methods Photo I.B. Compiled by Martin Mullett and Irene Barnes, June 2012 Contents 1 Isolation of Dothistroma ...................................................................................................1 1.1 Preparation of growth media ....................................................................................1 1.1.1 Dothistroma Medium (DM) ................................................................................1 1.1.2 Dothistroma Medium + streptomycin (DM+S) ....................................................1 1.1.3 Dothistroma Sporulating Medium (DSM) ...........................................................2 1.1.4 2% Malt Agar (MA) ............................................................................................2 1.1.5 Malt Extract Agar (MEA) ....................................................................................2 1.1.6 Water Agar (WA) ...............................................................................................2 1.1.7 Pine Needle Minimal Medium + Glucose (PMMG) .............................................3 1.2 Sterile techniques .....................................................................................................3 1.3 Surface sterilization of needles .................................................................................4 1.4 Isolation -
Multigene Phylogenies Reveal That Red Band Needle Blight of Pinus Is Caused by Two Distinct Species of Dothistroma, D
STUDIES IN MYCOLOGY 50: 551–565. 2004. Multigene phylogenies reveal that red band needle blight of Pinus is caused by two distinct species of Dothistroma, D. septosporum and D. pini Irene Barnes1*, Pedro W. Crous2, Brenda D. Wingfield1 and Michael J. Wingfield1 1Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, South Africa, 0002; 2 Centraalbureau voor Schimmelcultures (CBS), Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands *Correspondence: I. Barnes, [email protected] Abstract: The red band needle blight fungus, Dothistroma septosporum is a widely distributed pathogen of many pine species. Three morphological varieties of this pathogen have been described based on differences in conidial length. However, contro- versy exists as to whether spore size represents an adequate characteristic to distinguish between forms of D. septosporum. The aim of this investigation was to consider the phylogenetic relationships between D. septosporum isolates from different coun- tries. An additional objective was to determine whether comparisons of DNA sequence data support the morphological varie- ties recognized for this species. DNA from portions of the nuclear ribosomal internal transcribed spacer (ITS), -tubulin and elongation factor 1- genes were sequenced and analysed for isolates from 13 different countries representing five continents. Results show that isolates of the pathogen encompass two divergent lineages representing distinct phylogenetic species. One phylogenetic species (Lineage I) is found worldwide, while the other (Lineage II), is restricted to the North-Central U.S.A. The names D. pini and D. septosporum are available for these species. The former name should apply to the phylogenetic species currently known only from the United States.