Teleostei, Perciformes)
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Petition to List Eight Species of Pomacentrid Reef Fish, Including the Orange Clownfish and Seven Damselfish, As Threatened Or Endangered Under the U.S
BEFORE THE SECRETARY OF COMMERCE PETITION TO LIST EIGHT SPECIES OF POMACENTRID REEF FISH, INCLUDING THE ORANGE CLOWNFISH AND SEVEN DAMSELFISH, AS THREATENED OR ENDANGERED UNDER THE U.S. ENDANGERED SPECIES ACT Orange Clownfish (Amphiprion percula) photo by flickr user Jan Messersmith CENTER FOR BIOLOGICAL DIVERSITY SUBMITTED SEPTEMBER 13, 2012 Notice of Petition Rebecca M. Blank Acting Secretary of Commerce U.S. Department of Commerce 1401 Constitution Ave, NW Washington, D.C. 20230 Email: [email protected] Samuel Rauch Acting Assistant Administrator for Fisheries NOAA Fisheries National Oceanographic and Atmospheric Administration 1315 East-West Highway Silver Springs, MD 20910 E-mail: [email protected] PETITIONER Center for Biological Diversity 351 California Street, Suite 600 San Francisco, CA 94104 Tel: (415) 436-9682 _____________________ Date: September 13, 2012 Shaye Wolf, Ph.D. Miyoko Sakashita Center for Biological Diversity Pursuant to Section 4(b) of the Endangered Species Act (“ESA”), 16 U.S.C. § 1533(b), Section 553(3) of the Administrative Procedures Act, 5 U.S.C. § 553(e), and 50 C.F.R.§ 424.14(a), the Center for Biological Diversity hereby petitions the Secretary of Commerce and the National Oceanographic and Atmospheric Administration (“NOAA”), through the National Marine Fisheries Service (“NMFS” or “NOAA Fisheries”), to list eight pomacentrid reef fish and to designate critical habitat to ensure their survival. The Center for Biological Diversity (“Center”) is a non-profit, public interest environmental organization dedicated to the protection of imperiled species and their habitats through science, policy, and environmental law. The Center has more than 350,000 members and online activists throughout the United States. -
Phylogeny of the Damselfishes (Pomacentridae) and Patterns of Asymmetrical Diversification in Body Size and Feeding Ecology
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.07.430149; this version posted February 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Phylogeny of the damselfishes (Pomacentridae) and patterns of asymmetrical diversification in body size and feeding ecology Charlene L. McCord a, W. James Cooper b, Chloe M. Nash c, d & Mark W. Westneat c, d a California State University Dominguez Hills, College of Natural and Behavioral Sciences, 1000 E. Victoria Street, Carson, CA 90747 b Western Washington University, Department of Biology and Program in Marine and Coastal Science, 516 High Street, Bellingham, WA 98225 c University of Chicago, Department of Organismal Biology and Anatomy, and Committee on Evolutionary Biology, 1027 E. 57th St, Chicago IL, 60637, USA d Field Museum of Natural History, Division of Fishes, 1400 S. Lake Shore Dr., Chicago, IL 60605 Corresponding author: Mark W. Westneat [email protected] Journal: PLoS One Keywords: Pomacentridae, phylogenetics, body size, diversification, evolution, ecotype Abstract The damselfishes (family Pomacentridae) inhabit near-shore communities in tropical and temperature oceans as one of the major lineages with ecological and economic importance for coral reef fish assemblages. Our understanding of their evolutionary ecology, morphology and function has often been advanced by increasingly detailed and accurate molecular phylogenies. Here we present the next stage of multi-locus, molecular phylogenetics for the group based on analysis of 12 nuclear and mitochondrial gene sequences from 330 of the 422 damselfish species. -
Trait Decoupling Promotes Evolutionary Diversification of The
Trait decoupling promotes evolutionary diversification of the trophic and acoustic system of damselfishes rspb.royalsocietypublishing.org Bruno Fre´de´rich1, Damien Olivier1, Glenn Litsios2,3, Michael E. Alfaro4 and Eric Parmentier1 1Laboratoire de Morphologie Fonctionnelle et Evolutive, Applied and Fundamental Fish Research Center, Universite´ de Lie`ge, 4000 Lie`ge, Belgium 2Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland Research 3Swiss Institute of Bioinformatics, Ge´nopode, Quartier Sorge, 1015 Lausanne, Switzerland 4Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA Cite this article: Fre´de´rich B, Olivier D, Litsios G, Alfaro ME, Parmentier E. 2014 Trait decou- Trait decoupling, wherein evolutionary release of constraints permits special- pling promotes evolutionary diversification of ization of formerly integrated structures, represents a major conceptual the trophic and acoustic system of damsel- framework for interpreting patterns of organismal diversity. However, few fishes. Proc. R. Soc. B 281: 20141047. empirical tests of this hypothesis exist. A central prediction, that the tempo of morphological evolution and ecological diversification should increase http://dx.doi.org/10.1098/rspb.2014.1047 following decoupling events, remains inadequately tested. In damselfishes (Pomacentridae), a ceratomandibular ligament links the hyoid bar and lower jaws, coupling two main morphofunctional units directly involved in both feeding and sound production. Here, we test the decoupling hypothesis Received: 2 May 2014 by examining the evolutionary consequences of the loss of the ceratomandib- Accepted: 9 June 2014 ular ligament in multiple damselfish lineages. As predicted, we find that rates of morphological evolution of trophic structures increased following the loss of the ligament. -
Pomacentridae): Structural and Expression Variation in Opsin Genes
Molecular Ecology (2017) 26, 1323–1342 doi: 10.1111/mec.13968 Why UV vision and red vision are important for damselfish (Pomacentridae): structural and expression variation in opsin genes SARA M. STIEB,*† FABIO CORTESI,*† LORENZ SUEESS,* KAREN L. CARLETON,‡ WALTER SALZBURGER† and N. J. MARSHALL* *Sensory Neurobiology Group, Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia, †Zoological Institute, University of Basel, Basel 4051, Switzerland, ‡Department of Biology, The University of Maryland, College Park, MD 20742, USA Abstract Coral reefs belong to the most diverse ecosystems on our planet. The diversity in col- oration and lifestyles of coral reef fishes makes them a particularly promising system to study the role of visual communication and adaptation. Here, we investigated the evolution of visual pigment genes (opsins) in damselfish (Pomacentridae) and exam- ined whether structural and expression variation of opsins can be linked to ecology. Using DNA sequence data of a phylogenetically representative set of 31 damselfish species, we show that all but one visual opsin are evolving under positive selection. In addition, selection on opsin tuning sites, including cases of divergent, parallel, conver- gent and reversed evolution, has been strong throughout the radiation of damselfish, emphasizing the importance of visual tuning for this group. The highest functional variation in opsin protein sequences was observed in the short- followed by the long- wavelength end of the visual spectrum. Comparative gene expression analyses of a subset of the same species revealed that with SWS1, RH2B and RH2A always being expressed, damselfish use an overall short-wavelength shifted expression profile. Inter- estingly, not only did all species express SWS1 – a UV-sensitive opsin – and possess UV-transmitting lenses, most species also feature UV-reflective body parts. -
5Th Indo-Pacific Fish Conference
)tn Judo - Pacifi~ Fish Conference oun a - e II denia ( vernb ~ 3 - t 1997 A ST ACTS Organized by Under the aegis of L'Institut français Société de recherche scientifique Française pour le développement d'Ichtyologie en coopération ' FI Fish Conference Nouméa - New Caledonia November 3 - 8 th, 1997 ABSTRACTS LATE ARRIVAL ZOOLOGICAL CATALOG OF AUSTRALIAN FISHES HOESE D.F., PAXTON J. & G. ALLEN Australian Museum, Sydney, Australia Currently over 4000 species of fishes are known from Australia. An analysis ofdistribution patterns of 3800 species is presented. Over 20% of the species are endemic to Australia, with endemic species occuiring primarily in southern Australia. There is also a small component of the fauna which is found only in the southwestern Pacific (New Caledonia, Lord Howe Island, Norfolk Island and New Zealand). The majority of the other species are widely distributed in the western Pacific Ocean. AGE AND GROWTH OF TROPICAL TUNAS FROM THE WESTERN CENTRAL PACIFIC OCEAN, AS INDICATED BY DAILY GROWm INCREMENTS AND TAGGING DATA. LEROY B. South Pacific Commission, Nouméa, New Caledonia The Oceanic Fisheries Programme of the South Pacific Commission is currently pursuing a research project on age and growth of two tropical tuna species, yellowfm tuna (Thunnus albacares) and bigeye tuna (Thunnus obesus). The daily periodicity of microincrements forrned with the sagittal otoliths of these two spceies has been validated by oxytetracycline marking in previous studies. These validation studies have come from fishes within three regions of the Pacific (eastem, central and western tropical Pacific). Otolith microincrements are counted along transverse section with a light microscope. -
227 2008 1083 Article-Web 1..11
Mar Biol (2009) 156:289–299 DOI 10.1007/s00227-008-1083-z ORIGINAL PAPER Feeding macroecology of territorial damselWshes (Perciformes: Pomacentridae) Diego R. Barneche · S. R. Floeter · D. M. Ceccarelli · D. M. B. Frensel · D. F. Dinslaken · H. F. S. Mário · C. E. L. Ferreira Received: 10 March 2008 / Accepted: 28 October 2008 / Published online: 18 November 2008 © Springer-Verlag 2008 Abstract The present study provides the Wrst analysis of Stegastes and Pomacentrus, but this relationship was not the feeding macroecology of territorial damselWshes (Perci- signiWcant when all territorial pomacentrids were analyzed formes: Pomacentridae), a circumtropical family whose together. A negative correlation between body size and feeding and behavioral activities are important in structur- SST was observed for the whole group and for the genera ing tropical and subtropical reef benthic communities. The Stegastes, and Pomacentrus. No relationship was found analyses were conducted from data collected by the authors between territory size and feeding rates. Principal Compo- and from the literature. A strong positive correlation was nents Analysis showed that diVerences in feeding rates observed between bite rates and sea surface temperature accounted for most of the variability in the data. It also sug- (SST) for the genus Stegastes. A negative correlation was gested that body size may be important in characterizing found between bite rates and mean body size for the genera the diVerent genera. In general, tropical species are smaller and have higher bite rates than subtropical ones. This study extended the validity of Bergmann’s rule, which states that Communicated by S.D. Connell. larger species or larger individuals within species occur D. -
Perciformes: Pomacentridae) of the Eastern Pacific
LINNE AN .«ito/ BIOLOGICAL “W s o c í e T Y JournalLirmean Society Biological Journal of the Linnean Society, 2011, 102, 593-613. With 9 figures Patterns of morphological evolution of the cephalic region in damselfishes (Perciformes: Pomacentridae) of the Eastern Pacific ROSALÍA AGUILAR-MEDRANO1*, BRUNO FRÉDÉRICH2, EFRAÍN DE LUNA 3 and EDUARDO F. BALART1 laboratorio de Necton y Ecología de Arrecifes, y Colección Ictiológica, Centro de Investigaciones Biológicas del Noroeste, La Paz, B.C.S. 23090 México 2Laboratoire de Morphologie fonctionnelle et évolutive, Institut de Chimie (B6c), Université de Liège, B-4000 Liège, Belgium 3Departamento de Biodiversidad y Sistemática, Instituto de Ecología, AC, Xalapa, Veracruz 91000 México Received 20 May 2010; revised 21 September 2010; accepted for publication 22 September 2010 Pomacentridae are one of the most abundant fish families inhabiting reefs of tropical and temperate regions. This family, comprising 29 genera, shows a remarkable diversity of habitat preferences, feeding, and behaviours. Twenty-four species belonging to seven genera have been reported in the Eastern Pacific region. The present study focuses on the relationship between the diet and the cephalic profile in the 24 endemic damselfishes of this region. Feeding habits were determined by means of underwater observations and the gathering of bibliographic data. Variations in cephalic profile were analyzed by means of geometric morphometries and phylogenetic methods. The present study shows that the 24 species can be grouped into three main trophic guilds: zooplanktivores, algivores, and an intermediate group feeding on small pelagic and benthic preys. Shape variations were low within each genus except for Abudefduf. Phylogenetically adjusted regression reveals that head shape can be explained by differences in feeding habits. -
Rare Data on a Rocky Shore Fish
BRAZILIAN JOURNAL OF OCEANOGRAPHY, 55(3):199-206, 2007 RARE DATA ON A ROCKY SHORE FISH REPRODUCTIVE BIOLOGY: SEX RATIO, LENGTH OF FIRST MATURATION AND SPAWNING PERIOD OF ABUDEFDUF SAXATILIS (LINNAEUS, 1758) WITH NOTES ON STEGASTES VARIABILIS SPAWNING PERIOD (PERCIFORMES: POMACENTRIDAE) IN SÃO PAULO, BRAZIL Eduardo Bessa¹*, June Ferraz Dias² & Ana Maria de Souza¹ ¹Instituto de Biociências da Universidade de São Paulo (Rua do Matão, Trav. 14, 321 05508-900 São Paulo, SP, Brasil) *[email protected] ²Instituto Oceanográfico da Universidade de São Paulo (Praça do Oceanográfico, 191 05508-120, São Paulo, SP, Brasil) A B S T R A C T This study presents data on the reproduction of Abudefduf saxatilis, a rocky shore inhabitant at the northern coast of São Paulo State. A total of 73 individuals were collected using hooks and baits. They were measured, weighed and dissected, sex and maturation stage were analysed, first macroscopically, then part of the material was taken for microscopical confirmation. Visual censuses were also done for underwater observation of egg’s presence. Results showed equivalence of males and females in the population, first maturation occurring between 101 and 115mm of total length, spawning period occurs from November to February for Abudefduf saxatilis and October to January for Stegastes variabilis. Reproductive period for A. saxatilis was positively related to air temperature and thermic amplitude, but the environmental clue most likely to influence this rhythm is photoperiod. Transects with visual census of males guarding eggs were also a reliable tool for finding reproductive period in these demersal, egg-guarder species. R E S U M O Esse estudo apresenta dados sobre a reprodução de Abudefduf saxatilis, uma espécie habitante de costões rochosos no litoral norte do estado de São Paulo. -
Parasites and Cleaning Behaviour in Damselfishes Derek
Parasites and cleaning behaviour in damselfishes Derek Sun BMarSt, Honours I A thesis submitted for the degree of Doctor of Philosophy at The University of Queensland in 2015 School of Biological Sciences i Abstract Pomacentrids (damselfishes) are one of the most common and diverse group of marine fishes found on coral reefs. However, their digenean fauna and cleaning interactions with the bluestreak cleaner wrasse, Labroides dimidiatus, are poorly studied. This thesis explores the digenean trematode fauna in damselfishes from Lizard Island, Great Barrier Reef (GBR), Australia and examines several aspects of the role of L. dimidiatus in the recruitment of young damselfishes. My first study aimed to expand our current knowledge of the digenean trematode fauna of damselfishes by examining this group of fishes from Lizard Island on the northern GBR. In a comprehensive study of the digenean trematodes of damselfishes, 358 individuals from 32 species of damselfishes were examined. I found 19 species of digeneans, 54 host/parasite combinations, 18 were new host records, and three were new species (Fellodistomidae n. sp., Gyliauchenidae n. sp. and Pseudobacciger cheneyae). Combined molecular and morphological analyses show that Hysterolecitha nahaensis, the single most common trematode, comprises a complex of cryptic species rather than just one species. This work highlights the importance of using both techniques in conjunction in order to identify digenean species. The host-specificity of digeneans within this group of fishes is relatively low. Most of the species possess either euryxenic (infecting multiple related species) or stenoxenic (infecting a diverse range of hosts) specificity, with only a handful of species being convincingly oioxenic (only found in one host species). -
Neopomacentrus Aktites, a New Species of Damselfish (Pisces: Pomacentridae) from Western Australia
Neopomacentrus aktites, a new species of damselfish (Pisces: Pomacentridae) from Western Australia GERALD R. ALLEN Department of Aquatic Zoology, Western Australian Museum, Locked Bag 49, Welshpool DC, Perth, Western Australia 6986, Australia E-mail: [email protected] GLENN I. MOORE Department of Aquatic Zoology, Western Australian Museum, Locked Bag 49, Welshpool DC, Perth, Western Australia 6986 E-mail: [email protected] MARK G. ALLEN Department of Aquatic Zoology, Western Australian Museum, Locked Bag 49, Welshpool DC, Perth, Western Australia 6986 E-mail: [email protected] Abstract A new species of damselfish, Neopomacentrus aktites n. sp., is described on the basis of 50 specimens, 17.8– 54.1 mm SL, collected from Western Australia. The new species was formerly confused with Neopomacentrus filamentosus, an Indo-Malayan species that appears morphologically indistinguishable and has a mostly similar color pattern. However, the new species lacks several markings characteristic of N. filamentosus, i.e. a large black spot on the pectoral-fin axil, a large dark marking at the lateral-line origin, and yellow or gold color on the upper edge of the rear opercle. The two species differ by 7.55% (K2P) in the sequence of the mtDNA-barcode marker COI. The new species is only 2.19% divergent from an undescribed damselfish species from eastern Australia and southern New Guinea, but differs from that species by having dark margins on the proximal half of the caudal fin and lacking a bright yellow caudal fin, caudal peduncle, and posterior parts of the dorsal and anal fins. -
The Biogeography of Damselfish Skull Evolution: a Major Radiation Throughout the Indo-West Pacific Produces No Unique Skull Shapes
Proceedings of the 11th International Coral Reef Symposium, Ft. Lauderdale, Florida, 7-11 July 2008 Session number 26 The biogeography of damselfish skull evolution: A major radiation throughout the Indo-West Pacific produces no unique skull shapes W. J. Cooper Department of Biology, Syracuse University, 107 College Place, Life Sciences Complex, Syracuse, NY13244, USA [email protected] Abstract The Indo-West Pacific (IWP) is the center of damselfish biodiversity (Perciformes, Pomacentridae), but phylogeographic evidence indicates that most of the pomacentrids in this region belong to a single lineage that diverged 12-18 million years ago. A strong majority of these species can only be found in coral communities, and this clade represents a major radiation of coral reef fishes within the IWP. Although these fishes constitute approximately half of the damselfishes (183 of 376 species), the results of morphometric analyses indicate they do not possess any unique cranial shapes, and the results of rarefaction analyses reveal that their skull morphology is significantly less disparate than the cranial diversity of the other damselfish clades. The pomacentrid skull shapes that are not represented within this lineage belong to fishes that inhabit rocky reefs. If only species from predominantly coral reef genera are compared, then there are no significant differences in skull shape disparity between these two groups. The Pomacentridae exhibit numerous examples of morphological and trophic convergence, and this tendency towards repeatedly evolving similar ecotypes is exemplified by the finding that a major expansion among the coral reefs of the IWP has produced no unique examples of damselfish skull anatomy. Key words: Damselfish; Pomacentridae; Functional morphology; Fish feeding; Biogeography Introduction Westneat 2007; Floeter et al. -
Bayesian Node Dating Based on Probabilities of Fossil Sampling Supports Trans-Atlantic Dispersal of Cichlid Fishes
Supporting Information Bayesian Node Dating based on Probabilities of Fossil Sampling Supports Trans-Atlantic Dispersal of Cichlid Fishes Michael Matschiner,1,2y Zuzana Musilov´a,2,3 Julia M. I. Barth,1 Zuzana Starostov´a,3 Walter Salzburger,1,2 Mike Steel,4 and Remco Bouckaert5,6y Addresses: 1Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway 2Zoological Institute, University of Basel, Basel, Switzerland 3Department of Zoology, Faculty of Science, Charles University in Prague, Prague, Czech Republic 4Department of Mathematics and Statistics, University of Canterbury, Christchurch, New Zealand 5Department of Computer Science, University of Auckland, Auckland, New Zealand 6Computational Evolution Group, University of Auckland, Auckland, New Zealand yCorresponding author: E-mail: [email protected], [email protected] 1 Supplementary Text 1 1 Supplementary Text Supplementary Text S1: Sequencing protocols. Mitochondrial genomes of 26 cichlid species were amplified by long-range PCR followed by the 454 pyrosequencing on a GS Roche Junior platform. The primers for long-range PCR were designed specifically in the mitogenomic regions with low interspecific variability. The whole mitogenome of most species was amplified as three fragments using the following primer sets: for the region between position 2 500 bp and 7 300 bp (of mitogenome starting with tRNA-Phe), we used forward primers ZM2500F (5'-ACG ACC TCG ATG TTG GAT CAG GAC ATC C-3'), L2508KAW (Kawaguchi et al. 2001) or S-LA-16SF (Miya & Nishida 2000) and reverse primer ZM7350R (5'-TTA AGG CGT GGT CGT GGA AGT GAA GAA G-3'). The region between 7 300 bp and 12 300 bp was amplified using primers ZM7300F (5'-GCA CAT CCC TCC CAA CTA GGW TTT CAA GAT GC-3') and ZM12300R (5'-TTG CAC CAA GAG TTT TTG GTT CCT AAG ACC-3').