INSL4 As Prognostic Marker for Proliferation and Invasiveness In
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Anthropoid Primate–Specific Retroviral Element THE1B Controls Expression of CRH in Placenta and Alters Gestation Length
SHORT REPORTS Anthropoid primate±specific retroviral element THE1B controls expression of CRH in placenta and alters gestation length 1 1 1 2 Caitlin E. Dunn-FletcherID *, Lisa M. Muglia , Mihaela Pavlicev , Gernot Wolf , Ming- An Sun2, Yueh-Chiang Hu3, Elizabeth Huffman1, Shivani Tumukuntala1, Katri Thiele1, Amrita Mukherjee1, Sandra Zoubovsky1, Xuzhe Zhang1, Kayleigh A. Swaggart1, Katherine Y. Bezold Lamm1, Helen Jones4, Todd S. Macfarlan2, Louis J. Muglia1* a1111111111 1 Division of Human Genetics, Center for Prevention of Preterm Birth, Perinatal Institute, Cincinnati a1111111111 Children's Hospital Medical Center, Department of Pediatrics, University of Cincinnati College of Medicine, a1111111111 Cincinnati, Ohio, United States of America, 2 The Eunice Kennedy Shriver National Institute of Child Health a1111111111 and Human Development, The National Institutes of Health, Bethesda, Maryland, United States of America, 3 Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Department of a1111111111 Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio, United States of America, 4 Division of Pediatric Surgery, Cincinnati Children's Hospital Medical Center, Department of Surgery, University of Cincinnati College of Medicine, Cincinnati, Ohio, United States of America * [email protected] (CED); [email protected] (LJM) OPEN ACCESS Citation: Dunn-Fletcher CE, Muglia LM, Pavlicev M, Wolf G, Sun M-A, Hu Y-C, et al. (2018) Anthropoid Abstract primate±specific retroviral element THE1B controls expression of CRH in placenta and alters gestation Pregnancy and parturition are intricately regulated to ensure successful reproductive out- length. PLoS Biol 16(9): e2006337. https://doi.org/ comes. However, the factors that control gestational length in humans and other anthropoid 10.1371/journal.pbio.2006337 primates remain poorly defined. -
The Expression of Human Endogenous Retroviruses Is Modulated by the Tat Protein of HIV‐1
The Expression of Human Endogenous Retroviruses is modulated by the Tat protein of HIV‐1 by Marta Jeannette Gonzalez‐Hernandez A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy (Immunology) in The University of Michigan 2012 Doctoral Committee Professor David M. Markovitz, Chair Professor Gary Huffnagle Professor Michael J. Imperiale Associate Professor David J. Miller Assistant Professor Akira Ono Assistant Professor Christiane E. Wobus © Marta Jeannette Gonzalez‐Hernandez 2012 For my family and friends, the most fantastic teachers I have ever had. ii Acknowledgements First, and foremost, I would like to thank David Markovitz for his patience and his scientific and mentoring endeavor. My time in the laboratory has been an honor and a pleasure. Special thanks are also due to all the members of the Markovitz laboratory, past and present. It has been a privilege, and a lot of fun, to work near such excellent scientists and friends. You all have a special place in my heart. I would like to thank all the members of my thesis committee for all the valuable advice, help and jokes whenever needed. Our collaborators from the Bioinformatics Core, particularly James Cavalcoli, Fan Meng, Manhong Dai, Maureen Sartor and Gil Omenn gave generous support, technical expertise and scientific insight to a very important part of this project. Thank you. Thanks also go to Mariana Kaplan’s and Akira Ono’s laboratory for help with experimental designs and for being especially generous with time and reagents. iii Table of Contents Dedication ............................................................................................................................ ii Acknowledgements ............................................................................................................. iii List of Figures ................................................................................................................... -
Expression of Placental Regulatory Genes Is Associated with Fetal Growth
City University of New York (CUNY) CUNY Academic Works Publications and Research Queens College 2017 Expression of Placental Regulatory Genes Is Associated with Fetal Growth Maya A. Deyssenroth Icahn School of Medicine at Mount Sinai Qian Li Icahn School of Medicine at Mount Sinai Marina Lacasaña Andalusian School of Public Health Yoko Nomura CUNY Queens College Carmen Marsit Emory University See next page for additional authors How does access to this work benefit ou?y Let us know! More information about this work at: https://academicworks.cuny.edu/qc_pubs/189 Discover additional works at: https://academicworks.cuny.edu This work is made publicly available by the City University of New York (CUNY). Contact: [email protected] Authors Maya A. Deyssenroth, Qian Li, Marina Lacasaña, Yoko Nomura, Carmen Marsit, and Jia Chen This article is available at CUNY Academic Works: https://academicworks.cuny.edu/qc_pubs/189 J. Perinat. Med. 2017; aop Maya A. Deyssenrotha, Qian Lia, Marina Lacasaña, Yoko Nomura, Carmen Marsit and Jia Chen* Expression of placental regulatory genes is associated with fetal growth DOI 10.1515/jpm-2017-0064 independent cohort (n = 306). Given that aberrant fetal Received February 25, 2017. Accepted May 31, 2017. growth may have long-lasting effects, our results suggest the potential utility of placental gene expression profiles as Abstract: The placenta is the principal organ regulating potential early markers of disease onset later in life. respiratory, nutritional, endocrine and metabolic functions on behalf of the developing fetus. Changes in gene expres- Keywords: Birth weight; gene expression, placenta. sion patterns of placenta-specific genes may influence fetal growth. -
Supplementary Table 1
Supplementary Table 1. 492 genes are unique to 0 h post-heat timepoint. The name, p-value, fold change, location and family of each gene are indicated. Genes were filtered for an absolute value log2 ration 1.5 and a significance value of p ≤ 0.05. Symbol p-value Log Gene Name Location Family Ratio ABCA13 1.87E-02 3.292 ATP-binding cassette, sub-family unknown transporter A (ABC1), member 13 ABCB1 1.93E-02 −1.819 ATP-binding cassette, sub-family Plasma transporter B (MDR/TAP), member 1 Membrane ABCC3 2.83E-02 2.016 ATP-binding cassette, sub-family Plasma transporter C (CFTR/MRP), member 3 Membrane ABHD6 7.79E-03 −2.717 abhydrolase domain containing 6 Cytoplasm enzyme ACAT1 4.10E-02 3.009 acetyl-CoA acetyltransferase 1 Cytoplasm enzyme ACBD4 2.66E-03 1.722 acyl-CoA binding domain unknown other containing 4 ACSL5 1.86E-02 −2.876 acyl-CoA synthetase long-chain Cytoplasm enzyme family member 5 ADAM23 3.33E-02 −3.008 ADAM metallopeptidase domain Plasma peptidase 23 Membrane ADAM29 5.58E-03 3.463 ADAM metallopeptidase domain Plasma peptidase 29 Membrane ADAMTS17 2.67E-04 3.051 ADAM metallopeptidase with Extracellular other thrombospondin type 1 motif, 17 Space ADCYAP1R1 1.20E-02 1.848 adenylate cyclase activating Plasma G-protein polypeptide 1 (pituitary) receptor Membrane coupled type I receptor ADH6 (includes 4.02E-02 −1.845 alcohol dehydrogenase 6 (class Cytoplasm enzyme EG:130) V) AHSA2 1.54E-04 −1.6 AHA1, activator of heat shock unknown other 90kDa protein ATPase homolog 2 (yeast) AK5 3.32E-02 1.658 adenylate kinase 5 Cytoplasm kinase AK7 -
Synthesis, Conformation, and Activity of Human Insulin- Like Peptide 5 (INSL5) Mohammed Akhter Hossain,[A] Ross A
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by PubMed Central DOI: 10.1002/cbic.200800113 Synthesis, Conformation, and Activity of Human Insulin- Like Peptide 5 (INSL5) Mohammed Akhter Hossain,[a] Ross A. D. Bathgate,[a, b] Chze K. Kong,[a, b] Fazel Shabanpoor,[a, c] Suode Zhang,[a] Linda M. Haugaard-Jçnsson,[d] K. Johan Rosengren,[d] Geoffrey W. Tregear,[a, b] and John D. Wade*[a, c] Insulin-like peptide 5 (INSL5) was first identified through searches resistant to standard synthesis protocols and required highly opti- of the expressed sequence tags (EST) databases. Primary se- mized conditions for their acquisition. In particular, the use of a quence analysis showed it to be a prepropeptide that was pre- strong tertiary amidine, DBU, as Na-deprotection base was re- dicted to be processed in vivo to yield a two-chain sequence (A quired for the successful assembly of the B chain; this highlights and B) that contained the insulin-like disulfide cross-links. The the need to consider incomplete deprotection rather than acyla- high affinity interaction between INSL5 and the receptor RXFP4 tion as a cause of failed synthesis. Following sequential disulfide (GPCR142) coupled with their apparent coevolution and partially bond formation and chain combination, the resulting synthetic overlapping tissue expression patterns strongly suggest that INSL5, which was obtained in good overall yield, was shown to INSL5 is an endogenous ligand for RXFP4. Given that the primary possess a similar secondary structure to human relaxin-3 (H3 re- function of the INSL5–RXFP4 pair remains unknown, an effective laxin). -
INSL4 Pseudogenes Help Define the Relaxin Family Repertoire in The
J Mol Evol (2012) 75:73–78 DOI 10.1007/s00239-012-9517-0 INSL4 Pseudogenes Help Define the Relaxin Family Repertoire in the Common Ancestor of Placental Mammals Jose´ Ignacio Arroyo • Federico G. Hoffmann • Sara Good • Juan C. Opazo Received: 16 April 2012 / Accepted: 3 August 2012 / Published online: 9 September 2012 Ó Springer Science+Business Media, LLC 2012 Abstract The relaxin/insulin-like (RLN/INSL) gene fam- groups of mammals we can gain insights into when the ily comprises a group of signaling molecules that perform gene originated and better reconstruct its evolutionary physiological roles related mostly to reproduction and history. Here we identified INSL4 pseudogenes in two neuroendocrine regulation. They are found on three dif- laurasiatherian, (alpaca and dolphin) and one xenarthran ferent locations in the mammalian genome, which have (armadillo) species. Phylogenetic and synteny analyses been called relaxin family locus (RFL) A, B, and C. Early confirmed that the identified pseudogenes are orthologs of in placental mammalian evolution, the ancestral proto-RLN INSL4. According to these results, the proto-RLN gene in gene at the RFLB locus underwent successive rounds of the RFLB underwent two successive tandem duplications small-scale duplications resulting in variable number of which gave rise the INSL6 and INSL4 paralogs in the last paralogous genes in different placental lineages. Most common ancestor of placental mammals. The INSL4 gene placental mammals harbor copies of the RLN2 and INSL6 was subsequently inactivated or lost from the genome in all paralogs in the RFLB. However, the origin of an additional placentals other than catarrhine primates, where its product paralog, INSL4 (also known as placentin), has been con- became functionally relevant. -
Characterization of the Prohormone Complement in Cattle Using Genomic
BMC Genomics BioMed Central Research article Open Access Characterization of the prohormone complement in cattle using genomic libraries and cleavage prediction approaches Bruce R Southey*1,2, Sandra L Rodriguez-Zas2 and Jonathan V Sweedler1 Address: 1Department of Chemistry, University of Illinois, Urbana, IL, USA and 2Department of Animal Sciences, University of Illinois, Urbana IL, USA Email: Bruce R Southey* - [email protected]; Sandra L Rodriguez-Zas - [email protected]; Jonathan V Sweedler - [email protected] * Corresponding author Published: 16 May 2009 Received: 10 December 2008 Accepted: 16 May 2009 BMC Genomics 2009, 10:228 doi:10.1186/1471-2164-10-228 This article is available from: http://www.biomedcentral.com/1471-2164/10/228 © 2009 Southey et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Neuropeptides are cell to cell signalling molecules that regulate many critical biological processes including development, growth and reproduction. These peptides result from the complex processing of prohormone proteins, making their characterization both challenging and resource demanding. In fact, only 42 neuropeptide genes have been empirically confirmed in cattle. Neuropeptide research using high-throughput technologies such as microarray and mass spectrometry require accurate annotation of prohormone genes and products. However, the annotation and associated prediction efforts, when based solely on sequence homology to species with known neuropeptides, can be problematic. Results: Complementary bioinformatic resources were integrated in the first survey of the cattle neuropeptide complement. -
Supplementary Table 1: Screening Library Compound List
Supplementary Table 1: Screening library compound list # ligand 1 Ac2-26 (N-terminal fragment of annexin-1, lipocortin-1) 2 Ac2-12 (N-terminal fragment of annexin-1, lipocortin-1) 3 Boc-Phe-Leu-Phe-Leu-Phe 4 LL37 (Human) 5 N-Formyl-Nle-Leu-Phe-Nle-Tyr-Lys 6 N-Formyl-Met-Ile-Leu-Phe 7 N-Formyl-Met-Ile-Phe-Leu 8 N-Formyl-Met-Leu-Ile-Phe 9 N-Formyl-Met-Leu-Phe 10 N-Formyl-Met-Leu-Phe-Ile 11 N-Formyl-Met-Leu-Phe-Lys 12 N-Formyl-Met-Gln-Leu-Gly-Arg 13 WKYMVM 14 WKYMVm 15 Apelin-36 (Human) 16 Apelin-36 (Bovine) 17 Apelin-36 (Rat) 18 Apelin-19 (Human, Bovine) 19 Apelin-17 (Human, Bovine) 20 Apelin-16 (Human, Bovine) 21 Apelin-15 (Human, Bovine) 22 Apelin-13 (Human, Bovine) 23 Apelin-13, [pGlu1] (Human, Bovine) 24 Apelin (23-57) -Prepro (Human) 25 Apelin-12 (Human, Bovine) 26 Allatostatin 1 27 Allatostatin 3 28 Allatostatin 4 29 Adipokinetic Hormone (AKH) (Locust) 30 Adipokinetic Hormone (Heliothis zea and Manduca sexta) 31 Adipokinetic Hormone (Taa-AKH) (Tabanus atratus) 32 Adipokinetic Hormone II (Schistocera gregaria) 33 Adipokinetic Hormone G (AKH-G) (Gryllus bimaculatus) 34 Litorin-Rohdei (AF 1 Ascaris suum) 35 Angiotensin I (Human) 36 Angiotensin I (1-9) (Human) 37 Angiotensin I, [Des-Asp1-] (Human) 38 Angiotensin II (Human) 39 Angiotensin II [Sar1] 40 D-Pro7-Angiotensin-(1-7) 41 Angiotensin II, [Sar1,Ala8] 42 Angiotensin II [Sar1 Ile8] 43 Angiotensin II (1-7) 44 Angiotensin II [Sar1Val5Ala8] (Human Canine Rat Mouse) 45 Angiotensin IV [AT-II (3-8)] 46 Angiotensin II (4-8) (Human) 47 Angiotensin II, [Des-Asp1-] (Angiotensin III) (Human) 48 -
Discovery of Novel Serum Biomarkers for Prenatal Down Syndrome Screening by Integrative Data Mining
Discovery of Novel Serum Biomarkers for Prenatal Down Syndrome Screening by Integrative Data Mining Jeroen L. A. Pennings1*, Maria P. H. Koster2, Wendy Rodenburg1, Peter C. J. I. Schielen2, Annemieke de Vries1 1 Laboratory for Health Protection Research (GBO), National Institute for Public Health and the Environment (RIVM), Bilthoven, The Netherlands, 2 Laboratory for Infectious Diseases and Perinatal Screening (LIS), National Institute for Public Health and the Environment (RIVM), Bilthoven, The Netherlands Abstract Background: To facilitate the experimental search for novel maternal serum biomarkers in prenatal Down Syndrome screening, we aimed to create a set of candidate biomarkers using a data mining approach. Methodology/Principal Findings: Because current screening markers are derived from either fetal liver or placental trophoblasts, we reasoned that new biomarkers can primarily be found to be derived from these two tissues. By applying a three-stage filtering strategy on publicly available data from different sources, we identified 49 potential blood-detectable protein biomarkers. Our set contains three biomarkers that are currently widely used in either first- or second-trimester screening (AFP, PAPP-A and fb-hCG), as well as ten other proteins that are or have been examined as prenatal serum markers. This supports the effectiveness of our strategy and indicates the set contains other markers potentially applicable for screening. Conclusions/Significance: We anticipate the set will help support further experimental studies for the identification of new Down Syndrome screening markers in maternal blood. Citation: Pennings JLA, Koster MPH, Rodenburg W, Schielen PCJI, de Vries A (2009) Discovery of Novel Serum Biomarkers for Prenatal Down Syndrome Screening by Integrative Data Mining. -
Protein Catalogue Sinobiological Inc
Protein Catalogue SinoBiological Inc. Established in 2007, Sino Biological is a global biotechnology company manufacturing high quality research reagents for basic, translational, and clinical research. Sino Biological laboratories consist of over 80,000 square meters, producing cDNAs, recombinant proteins, antibodies and antibody-based kits that are used to study cellular function and human diseases. Sino Biological scientists are experienced in recombinant protein expression and purification from bacterial, yeast, insect and mammalian system. The scientists have also developed technologies to produce and purify a comprehensive collec- tion of mouse monoclonal antibodies, rabbit polyclonal antibodies, and rabbit monoclonal antibodies. Sino Biological offers integrated service from gene cloning to protein expression, protein purification, and immunization for polyclonal or mono- clonal antibody generation. We have provided CRO services to produce targets proteins, antibodies, and optimized ELISA tools to meet the needs of the biopharmaceutical industry, including the top 10 pharmaceutical companies. Sino Biological product sales are supported through a network of distributors in North American, European and Asian markets. We are proud that our products are helping scientists to solve significant problems in life science research. Every product has to pass rigorous QC test standards to ensure consistent high quality. We validate our product application and guarantee its performance as specified. We are developing tools and technologies -
Supplementary Table 1
Supplemental Table 1. List of known genes affected by radiation as detected by microarray analysis of polysome-bound RNA and total cellular RNA. U87 cell were irradiated with 7 Gy and collected for microarray analyses 6h later. Polysome-bound RNA UniGene # Gene Description Fold Change (log 2) Hs.429294 ABCA1 ATP-binding cassette, sub-family A (ABC1), member 1 1.5829 Hs.471277 ACADL Acyl-Coenzyme A dehydrogenase, long chain 1.2587 Hs.471461 ACSL3 Acyl-CoA synthetase long-chain family member 3 1.2404 Hs.268785 ACSL4 Acyl-CoA synthetase long-chain family member 4 1.5611 Hs.14945 ACSL6 Acyl-CoA synthetase long-chain family member 6 1.5067 Hs.393201 ACTR2 ARP2 actin-related protein 2 homolog (yeast) 1.4219 Hs.433512 ACTR3 ARP3 actin-related protein 3 homolog (yeast) 1.2404 Hs.150402 ACVR1 activin A receptor, type I=Ser/Thr protein kinase receptor R1 1.2864 Hs.438918 ACVR1B Activin A receptor, type IB 1.0827 Hs.127930 ADAM18 A disintegrin and metalloproteinase domain 18 1.0261 Hs.370287 ADAM23 A disintegrin and metalloproteinase domain 23 1.226 Hs.2442 ADAM9 A disintegrin and metalloproteinase domain 9 (meltrin gamma) 1.6771 Hs.151435 ADAMTS3 A disintegrin-like and metalloprotease (reprolysin type) with 1.3683 thrombospondin type 1 motif, 3 Hs.498313 ADSS Adenylosuccinate synthase 1.1344 Hs.515053 AES Amino-terminal enhancer of split 1.518 Hs.75823 AF1Q ALL1-fused gene from chromosome 1q 1.879 Hs.904 AGL Amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen 1.2491 debranching enzyme, glycogen storage disease type III) Hs.530009 AGR2 Anterior -
Supplementary Materials: AGTR1 Is Overexpressed in Neuroendocrine
Supplementary Materials: AGTR1 Is Overexpressed in Neuroendocrine Neoplasms, Regulates Secretion and May Potentially Serve as a Target for Molecular Imaging and Therapy Samantha Exner, Claudia Schuldt, Sachindra Sachindra, Jing Du, Isabelle Heing-Becker, Kai Licha, Bertram Wiedenmann and Carsten Grötzinger Table S1. Screening library compound list.