Supplementary Table 1: Screening Library Compound List
Total Page：16
File Type：pdf, Size：1020Kb
Load more
Recommended publications
-
Anthropoid Primate–Specific Retroviral Element THE1B Controls Expression of CRH in Placenta and Alters Gestation Length
SHORT REPORTS Anthropoid primate±specific retroviral element THE1B controls expression of CRH in placenta and alters gestation length 1 1 1 2 Caitlin E. Dunn-FletcherID *, Lisa M. Muglia , Mihaela Pavlicev , Gernot Wolf , Ming- An Sun2, Yueh-Chiang Hu3, Elizabeth Huffman1, Shivani Tumukuntala1, Katri Thiele1, Amrita Mukherjee1, Sandra Zoubovsky1, Xuzhe Zhang1, Kayleigh A. Swaggart1, Katherine Y. Bezold Lamm1, Helen Jones4, Todd S. Macfarlan2, Louis J. Muglia1* a1111111111 1 Division of Human Genetics, Center for Prevention of Preterm Birth, Perinatal Institute, Cincinnati a1111111111 Children's Hospital Medical Center, Department of Pediatrics, University of Cincinnati College of Medicine, a1111111111 Cincinnati, Ohio, United States of America, 2 The Eunice Kennedy Shriver National Institute of Child Health a1111111111 and Human Development, The National Institutes of Health, Bethesda, Maryland, United States of America, 3 Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Department of a1111111111 Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio, United States of America, 4 Division of Pediatric Surgery, Cincinnati Children's Hospital Medical Center, Department of Surgery, University of Cincinnati College of Medicine, Cincinnati, Ohio, United States of America * [email protected] (CED); [email protected] (LJM) OPEN ACCESS Citation: Dunn-Fletcher CE, Muglia LM, Pavlicev M, Wolf G, Sun M-A, Hu Y-C, et al. (2018) Anthropoid Abstract primate±specific retroviral element THE1B controls expression of CRH in placenta and alters gestation Pregnancy and parturition are intricately regulated to ensure successful reproductive out- length. PLoS Biol 16(9): e2006337. https://doi.org/ comes. However, the factors that control gestational length in humans and other anthropoid 10.1371/journal.pbio.2006337 primates remain poorly defined. -
The Expression of Human Endogenous Retroviruses Is Modulated by the Tat Protein of HIV‐1
The Expression of Human Endogenous Retroviruses is modulated by the Tat protein of HIV‐1 by Marta Jeannette Gonzalez‐Hernandez A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy (Immunology) in The University of Michigan 2012 Doctoral Committee Professor David M. Markovitz, Chair Professor Gary Huffnagle Professor Michael J. Imperiale Associate Professor David J. Miller Assistant Professor Akira Ono Assistant Professor Christiane E. Wobus © Marta Jeannette Gonzalez‐Hernandez 2012 For my family and friends, the most fantastic teachers I have ever had. ii Acknowledgements First, and foremost, I would like to thank David Markovitz for his patience and his scientific and mentoring endeavor. My time in the laboratory has been an honor and a pleasure. Special thanks are also due to all the members of the Markovitz laboratory, past and present. It has been a privilege, and a lot of fun, to work near such excellent scientists and friends. You all have a special place in my heart. I would like to thank all the members of my thesis committee for all the valuable advice, help and jokes whenever needed. Our collaborators from the Bioinformatics Core, particularly James Cavalcoli, Fan Meng, Manhong Dai, Maureen Sartor and Gil Omenn gave generous support, technical expertise and scientific insight to a very important part of this project. Thank you. Thanks also go to Mariana Kaplan’s and Akira Ono’s laboratory for help with experimental designs and for being especially generous with time and reagents. iii Table of Contents Dedication ............................................................................................................................ ii Acknowledgements ............................................................................................................. iii List of Figures ................................................................................................................... -
Properties of Chemically Oxidized Kininogens*
Vol. 50 No. 3/2003 753–763 QUARTERLY Properties of chemically oxidized kininogens*. Magdalena Nizio³ek, Marcin Kot, Krzysztof Pyka, Pawe³ Mak and Andrzej Kozik½ Faculty of Biotechnology, Jagiellonian University, Kraków, Poland Received: 30 May, 2003; revised: 01 August, 2003; accepted: 11 August, 2003 Key words: bradykinin, N-chlorosuccinimide, chloramine-T, kallidin, kallikrein, reactive oxygen species Kininogens are multifunctional proteins involved in a variety of regulatory pro- cesses including the kinin-formation cascade, blood coagulation, fibrynolysis, inhibi- tion of cysteine proteinases etc. A working hypothesis of this work was that the prop- erties of kininogens may be altered by oxidation of their methionine residues by reac- tive oxygen species that are released at the inflammatory foci during phagocytosis of pathogen particles by recruited neutrophil cells. Two methionine-specific oxidizing reagents, N-chlorosuccinimide (NCS) and chloramine-T (CT), were used to oxidize the high molecular mass (HK) and low molecular mass (LK) forms of human kininogen. A nearly complete conversion of methionine residues to methionine sulfoxide residues in the modified proteins was determined by amino acid analysis. Production of kinins from oxidized kininogens by plasma and tissue kallikreins was significantly lower (by at least 70%) than that from native kininogens. This quenching effect on kinin release could primarily be assigned to the modification of the critical Met-361 residue adja- cent to the internal kinin sequence in kininogen. However, virtually no kinin could be formed by human plasma kallikrein from NCS-modified HK. This observation sug- gests involvement of other structural effects detrimental for kinin production. In- deed, NCS-oxidized HK was unable to bind (pre)kallikrein, probably due to the modifi- cation of methionine and/or tryptophan residues at the region on the kininogen mole- cule responsible for the (pro)enzyme binding. -
Sized Neuropeptides
M ETHODS IN MOLECULAR BIOLOGY™ Series Editor John M. Walker School of Life Sciences University of Hertfordshire Hatfield, Hertfordshire, AL10 9AB, UK For further volumes: http://www.springer.com/series/7651 Neuropeptides Methods and Protocols Edited by Adalberto Merighi Dipartimento di Morfofisiologia Veterinaria, Università degli Studi di Torino, Grugliasco, TO, Italy; Istituto Nazionale di Neuroscienze (INN), Università degli Studi di Torino, Grugliasco, TO, Italy Editor Adalberto Merighi Dipartimento di Morfofisiologia Veterinaria Università degli Studi di Torino and Istituto Nazionale di Neuroscienze (INN) Università degli Studi di Torino Grugliasco, TO, Italy [email protected] Please note that additional material for this book can be downloaded from http://extras.springer.com ISSN 1064-3745 e-ISSN 1940-6029 ISBN 978-1-61779-309-7 e-ISBN 978-1-61779-310-3 DOI 10.1007/978-1-61779-310-3 Springer New York Dordrecht Heidelberg London Library of Congress Control Number: 2011936011 © Springer Science+Business Media, LLC 2011 All rights reserved. This work may not be translated or copied in whole or in part without the written permission of the publisher (Humana Press, c/o Springer Science+Business Media, LLC, 233 Spring Street, New York, NY 10013, USA), except for brief excerpts in connection with reviews or scholarly analysis. Use in connection with any form of information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed is forbidden. The use in this publication of trade names, trademarks, service marks, and similar terms, even if they are not identified as such, is not to be taken as an expression of opinion as to whether or not they are subject to proprietary rights. -
Expression of Placental Regulatory Genes Is Associated with Fetal Growth
City University of New York (CUNY) CUNY Academic Works Publications and Research Queens College 2017 Expression of Placental Regulatory Genes Is Associated with Fetal Growth Maya A. Deyssenroth Icahn School of Medicine at Mount Sinai Qian Li Icahn School of Medicine at Mount Sinai Marina Lacasaña Andalusian School of Public Health Yoko Nomura CUNY Queens College Carmen Marsit Emory University See next page for additional authors How does access to this work benefit ou?y Let us know! More information about this work at: https://academicworks.cuny.edu/qc_pubs/189 Discover additional works at: https://academicworks.cuny.edu This work is made publicly available by the City University of New York (CUNY). Contact: [email protected] Authors Maya A. Deyssenroth, Qian Li, Marina Lacasaña, Yoko Nomura, Carmen Marsit, and Jia Chen This article is available at CUNY Academic Works: https://academicworks.cuny.edu/qc_pubs/189 J. Perinat. Med. 2017; aop Maya A. Deyssenrotha, Qian Lia, Marina Lacasaña, Yoko Nomura, Carmen Marsit and Jia Chen* Expression of placental regulatory genes is associated with fetal growth DOI 10.1515/jpm-2017-0064 independent cohort (n = 306). Given that aberrant fetal Received February 25, 2017. Accepted May 31, 2017. growth may have long-lasting effects, our results suggest the potential utility of placental gene expression profiles as Abstract: The placenta is the principal organ regulating potential early markers of disease onset later in life. respiratory, nutritional, endocrine and metabolic functions on behalf of the developing fetus. Changes in gene expres- Keywords: Birth weight; gene expression, placenta. sion patterns of placenta-specific genes may influence fetal growth. -
United States Patent (19) 11 Patent Number: 5,039,660 Leonard Et Al
United States Patent (19) 11 Patent Number: 5,039,660 Leonard et al. (45. Date of Patent: Aug. 13, 1991 54 PARTIALLY FUSED PEPTIDE PELLET 4,667,014 5/1987 Nestor, Jr. et al. ................. 514/800 4,801,577 / 1989 Nestor, Jr. et al. ................. 54/800 75 Inventors: Robert J. Leonard, Lynnfield, Mass.; S. Mitchell Harman, Ellicott City, Primary Examiner-Lester L. Lee Md. Attorney, Agent, or Firm-Wolf, Greenfield & Sacks 73 Assignee: Endocon, Inc., South Walpole, Mass. (57) ABSTRACT 21 Appl. No.: 163,328 A bioerodible pellet capable of administering an even 22 Filed: Mar. 2, 1988 and continuous dose of a peptide over a period of up to a year, when subcutaneously implanted, is provided. (51) Int. Cl’.............................................. C07K 17/08 (52 U.S.C. .......................................... 514/8; 514/12; The bioerodible implant is a partially-fused pellet, 514/14: 514/15; 514/16; 514/17; 514/18; which pellet has a peptide drug homogeneously-bound 514/19; 514/800 in a matrix of a melted and recrystallized, nonpolymer Field of Search ................... 514/8, 12, 14, 15, 16, carrier. Preferably, the nonpolymer carrier is a steroid (58) and in particular is cholesterol or a cholesterol deriva 514/17, 18, 19, 800 tive. In one embodiment, the peptide drug is growth (56) References Cited hormone-releasing hormone. A method for making the U.S. PATENT DOCUMENTS bioerodible pellet also is provided. 4,164,560 8/1979 Folkman et al. .................... 424/427 '4,591,496 5/1986 Cohen et al. .......................... 424/78 13 Claims, 4 Drawing Sheets U.S. Patent Aug. -
Supplementary Table 1
Supplementary Table 1. 492 genes are unique to 0 h post-heat timepoint. The name, p-value, fold change, location and family of each gene are indicated. Genes were filtered for an absolute value log2 ration 1.5 and a significance value of p ≤ 0.05. Symbol p-value Log Gene Name Location Family Ratio ABCA13 1.87E-02 3.292 ATP-binding cassette, sub-family unknown transporter A (ABC1), member 13 ABCB1 1.93E-02 −1.819 ATP-binding cassette, sub-family Plasma transporter B (MDR/TAP), member 1 Membrane ABCC3 2.83E-02 2.016 ATP-binding cassette, sub-family Plasma transporter C (CFTR/MRP), member 3 Membrane ABHD6 7.79E-03 −2.717 abhydrolase domain containing 6 Cytoplasm enzyme ACAT1 4.10E-02 3.009 acetyl-CoA acetyltransferase 1 Cytoplasm enzyme ACBD4 2.66E-03 1.722 acyl-CoA binding domain unknown other containing 4 ACSL5 1.86E-02 −2.876 acyl-CoA synthetase long-chain Cytoplasm enzyme family member 5 ADAM23 3.33E-02 −3.008 ADAM metallopeptidase domain Plasma peptidase 23 Membrane ADAM29 5.58E-03 3.463 ADAM metallopeptidase domain Plasma peptidase 29 Membrane ADAMTS17 2.67E-04 3.051 ADAM metallopeptidase with Extracellular other thrombospondin type 1 motif, 17 Space ADCYAP1R1 1.20E-02 1.848 adenylate cyclase activating Plasma G-protein polypeptide 1 (pituitary) receptor Membrane coupled type I receptor ADH6 (includes 4.02E-02 −1.845 alcohol dehydrogenase 6 (class Cytoplasm enzyme EG:130) V) AHSA2 1.54E-04 −1.6 AHA1, activator of heat shock unknown other 90kDa protein ATPase homolog 2 (yeast) AK5 3.32E-02 1.658 adenylate kinase 5 Cytoplasm kinase AK7 -
![Synthesis, Conformation, and Activity of Human Insulin- Like Peptide 5 (INSL5) Mohammed Akhter Hossain,[A] Ross A](https://docslib.b-cdn.net/cover/4574/synthesis-conformation-and-activity-of-human-insulin-like-peptide-5-insl5-mohammed-akhter-hossain-a-ross-a-1814574.webp)
Synthesis, Conformation, and Activity of Human Insulin- Like Peptide 5 (INSL5) Mohammed Akhter Hossain,[A] Ross A
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by PubMed Central DOI: 10.1002/cbic.200800113 Synthesis, Conformation, and Activity of Human Insulin- Like Peptide 5 (INSL5) Mohammed Akhter Hossain,[a] Ross A. D. Bathgate,[a, b] Chze K. Kong,[a, b] Fazel Shabanpoor,[a, c] Suode Zhang,[a] Linda M. Haugaard-Jçnsson,[d] K. Johan Rosengren,[d] Geoffrey W. Tregear,[a, b] and John D. Wade*[a, c] Insulin-like peptide 5 (INSL5) was first identified through searches resistant to standard synthesis protocols and required highly opti- of the expressed sequence tags (EST) databases. Primary se- mized conditions for their acquisition. In particular, the use of a quence analysis showed it to be a prepropeptide that was pre- strong tertiary amidine, DBU, as Na-deprotection base was re- dicted to be processed in vivo to yield a two-chain sequence (A quired for the successful assembly of the B chain; this highlights and B) that contained the insulin-like disulfide cross-links. The the need to consider incomplete deprotection rather than acyla- high affinity interaction between INSL5 and the receptor RXFP4 tion as a cause of failed synthesis. Following sequential disulfide (GPCR142) coupled with their apparent coevolution and partially bond formation and chain combination, the resulting synthetic overlapping tissue expression patterns strongly suggest that INSL5, which was obtained in good overall yield, was shown to INSL5 is an endogenous ligand for RXFP4. Given that the primary possess a similar secondary structure to human relaxin-3 (H3 re- function of the INSL5–RXFP4 pair remains unknown, an effective laxin). -
Akhtar Saeed Medical and Dental College, Lhr
STUDY GUIDE PHARMACOLOGY 3RD YEAR MBBS 2021 AKHTAR SAEED MEDICAL AND DENTAL COLLEGE, LHR 1 Table of contents s.No Topic Page No 1. Brief introduction about study guide 03 2. Study guide about amdc pharmacology 04 3. Learning objectives at the end of each topic 05-21 4. Pharmacology classifications 22-59 5. General pharmacology definitions 60-68 6. Brief introduction about FB PAGE AND GROUP 69-70 7. ACADEMIC CALENDER (session wise) 72 2 Department of pharmacology STUDY GUIDE? It is an aid to: • Inform students how student learnIng program of academIc sessIon has been organized • help students organIze and manage theIr studIes throughout the session • guIde students on assessment methods, rules and regulatIons THE STUDY GUIDE: • communIcates InformatIon on organIzatIon and management of the course • defInes the objectIves whIch are expected to be achIeved at the end of each topic. • IdentIfIes the learning strategies such as lectures, small group teachings, clinical skills, demonstration, tutorial and case based learning that will be implemented to achieve the objectives. • provIdes a lIst of learnIng resources such as books, computer assIsted learning programs, web- links, for students to consult in order to maximize their learning. 3 1. Learning objectives (at the end of each topic) 2. Sources of knowledge: i. Recommended Books 1. Basic and Clinical Pharmacology by Katzung, 13th Ed., Mc Graw-Hill 2. Pharmacology by Champe and Harvey, 2nd Ed., Lippincott Williams & Wilkins ii. CDs of Experimental Pharmacology iii. CDs of PHARMACY PRACTICALS iv. Departmental Library containing reference books & Medical Journals v. GENERAL PHARMACOLOGY DFINITIONS vi. CLASSIFICATIONS OF PHARMACOLOGY vii. -
(A-LAP)/ER-Aminopeptidase-1
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector FEBS Letters 580 (2006) 1833–1838 Reduced activity of the hypertension-associated Lys528Arg mutant of human adipocyte-derived leucine aminopeptidase (A-LAP)/ER-aminopeptidase-1 Yoshikuni Gotoa,b, Akira Hattoria, Yasuhiro Ishiib, Masafumi Tsujimotoa,* a Laboratory of Cellular Biochemistry, RIKEN, 2-1 Hirosawa, Wako-shi, Saitama 351-0198, Japan b Laboratory of Applied Protein Chemistry, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-0054, Japan Received 15 December 2005; revised 21 January 2006; accepted 15 February 2006 Available online 24 February 2006 Edited by Irmgard Sinning searching databases [3,4]. Structural and phylogenetic analyses Abstract The adipocyte-derived leucine aminopeptidase (A- LAP)/ER aminopeptidase-1 is a multi-functional enzyme belong- indicated that P-LAP, A-LAP and L-RAP are most closely re- ing to the M1 family of aminopeptidases. It was reported that the lated among the M1 family of aminopeptidases, which contain polymorphism Lys528Arg in the human A-LAP gene is associ- GAMEN and HEXXH(X)18E consensus motifs. Therefore we ated with essential hypertension. In this study, the role of proposed that they should be classified into ‘‘the oxytocinase Lys528 in the enzymatic activity of human A-LAP was exam- subfamily of M1 aminopeptidases’’ [5]. ined by site-directed mutagenesis. Among non-synonymous poly- A-LAP is a multi-functional aminopeptidase shown to play morphisms tested, only Lys528Arg reduced enzymatic activity. roles in the regulation of blood pressure, angiogenesis and The replacement of Lys528 with various amino acids including antigen presentation to MHC class I molecules [5–9]. -
(12) Patent Application Publication (10) Pub. No.: US 2015/0050270 A1 Li Et Al
US 2015.005O270A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2015/0050270 A1 Li et al. (43) Pub. Date: Feb. 19, 2015 (54) ANTIBODIES TO BRADYKININ B1 Publication Classification RECEPTOR LIGANDS (51) Int. Cl. (71) Applicant: Sanofi, Paris (FR) C07K 6/28 (2006.01) A647/48 (2006.01) (72) Inventors: Han Li, Yardley, PA (US); Dorothea Kominos, Millington, NJ (US); Jie (52) U.S. Cl. Zhang, Cambridge, MA (US); Alla CPC ........... C07K 16/28 (2013.01); A61K 47/48007 Pritzker, Cambridge, MA (US); (2013.01); C07K 2317/92 (2013.01); C07K Matthew Davison, Cambridge, MA 2317/565 (2013.01); C07K 2317/76 (2013.01); (US); Nicolas Baurin, Arpajon (FR); C07K 231 7/24 (2013.01); A61K 2039/505 Govindan Subramanian, Belle Mead, (2013.01) NJ (US); Xin Chen, Edison, NJ (US) USPC .................. 424/133.1; 530/387.3; 530/3917; 536/23.53; 435/320.1; 435/334: 435/69.6 (73) Assignee: SANOFI, Paris (FR) (21) Appl. No.: 14/382,798 (57) ABSTRACT (22) PCT Filed: Mar. 15, 2013 The invention provides antibodies that specifically bind to (86). PCT No.: PCT/US13A31836 Kallidin ordes-Arg10-Kallidin. The invention also provides S371 (c)(1), pharmaceutical compositions, as well as nucleic acids encod (2) Date: Sep. 4, 2014 ing anti-Kallidin ordes-Arg10-Kallidin antibodies, recombi nant expression vectors and host cells for making such anti Related U.S. Application Data bodies, or fragments thereof. Methods of using antibodies of (60) Provisional application No. 61/616,845, filed on Mar. the invention to modulate Kallidin or des-Arg10-Kallidin 28, 2012. -
Capturing Peptide–GPCR Interactions and Their Dynamics
molecules Review Capturing Peptide–GPCR Interactions and Their Dynamics Anette Kaiser * and Irene Coin Faculty of Life Sciences, Institute of Biochemistry, Leipzig University, Brüderstr. 34, D-04103 Leipzig, Germany; [email protected] * Correspondence: [email protected] Academic Editor: Paolo Ruzza Received: 31 August 2020; Accepted: 9 October 2020; Published: 15 October 2020 Abstract: Many biological functions of peptides are mediated through G protein-coupled receptors (GPCRs). Upon ligand binding, GPCRs undergo conformational changes that facilitate the binding and activation of multiple effectors. GPCRs regulate nearly all physiological processes and are a favorite pharmacological target. In particular, drugs are sought after that elicit the recruitment of selected effectors only (biased ligands). Understanding how ligands bind to GPCRs and which conformational changes they induce is a fundamental step toward the development of more efficient and specific drugs. Moreover, it is emerging that the dynamic of the ligand–receptor interaction contributes to the specificity of both ligand recognition and effector recruitment, an aspect that is missing in structural snapshots from crystallography. We describe here biochemical and biophysical techniques to address ligand–receptor interactions in their structural and dynamic aspects, which include mutagenesis, crosslinking, spectroscopic techniques, and mass-spectrometry profiling. With a main focus on peptide receptors, we present methods to unveil the ligand–receptor contact interface and methods that address conformational changes both in the ligand and the GPCR. The presented studies highlight a wide structural heterogeneity among peptide receptors, reveal distinct structural changes occurring during ligand binding and a surprisingly high dynamics of the ligand–GPCR complexes. Keywords: GPCR activation; peptide–GPCR interactions; structural dynamics of GPCRs; peptide ligands; crosslinking; NMR; EPR 1.