Bathymodiolin Mussels Associated with a Miocene Whale Fall from Italy
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BIOPAPUA Expedition Highlighting Deep-Sea Benthic Biodiversity of Papua New- Guinea
Biopapua Expedition – Progress report MUSÉUM NATIONAL D'HISTOIRE NATURELLE 57 rue Cuvier 75005 PARIS‐ France BIOPAPUA Expedition Highlighting deep-sea benthic Biodiversity of Papua New- Guinea Submitted by: Muséum National d'Histoire Naturelle (MNHN) Represented by (co‐PI): Dr Sarah Samadi (Researcher, IRD) Dr Philippe Bouchet (Professor, MNHN) Dr Laure Corbari (Research associate, MNHN) 1 Biopapua Expedition – Progress report Contents Foreword 3 1‐ Our understanding of deep‐sea biodiversity of PNG 4 2 ‐ Tropical Deep‐Sea Benthos program 5 3‐ Biopapua Expedition 7 4‐ Collection management 15 5‐ Preliminary results 17 6‐ Outreach and publications 23 7‐ Appendices 26 Appendix 1 27 NRI, note n°. 302/2010 on 26th march, 2010, acceptance of Biopapua reseach programme Appendix 2 28 Biopapua cruise Report, submitted by Ralph MANA (UPNG) A Report Submitted to School of Natural and Physical Sciences, University of Papua New Guinea Appendix 3 39 Chan, T.Y (2012) A new genus of deep‐sea solenocerid shrimp (Crustacea: Decapoda: Penaeoidea) from the Papua New Guinea. Journal of Crustacean Biology, 32(3), 489‐495. Appendix 4 47 Pante E, Corbari L., Thubaut J., Chan TY, Mana R., Boisselier MC, Bouchet P., Samadi S. (In Press). Exploration of the deep‐sea fauna of Papua New Guinea. Oceanography Appendix 5 60 Richer de Forges B. & Corbari L. (2012) A new species of Oxypleurodon Miers, 1886 (Crustacea Brachyura, Majoidea) from the Bismark Sea, Papua New Guinea. Zootaxa. 3320: 56–60 Appendix 6 66 Taxonomic list: Specimens in MNHN and Taiwan collections 2 Biopapua Expedition – Progress report Foreword Biopapua cruise was a MNHN/IRD deep‐sea cruise in partnership with the School of Natural and Physical Sciences, University of Papua New Guinea. -
Species Are Hypotheses: Avoid Connectivity Assessments Based on Pillars of Sand Eric Pante, Nicolas Puillandre, Amélia Viricel, Sophie Arnaud-Haond, D
Species are hypotheses: avoid connectivity assessments based on pillars of sand Eric Pante, Nicolas Puillandre, Amélia Viricel, Sophie Arnaud-Haond, D. Aurelle, Magalie Castelin, Anne Chenuil, Christophe Destombe, Didier Forcioli, Myriam Valero, et al. To cite this version: Eric Pante, Nicolas Puillandre, Amélia Viricel, Sophie Arnaud-Haond, D. Aurelle, et al.. Species are hypotheses: avoid connectivity assessments based on pillars of sand. Molecular Ecology, Wiley, 2015, 24 (3), pp.525-544. hal-02002440 HAL Id: hal-02002440 https://hal.archives-ouvertes.fr/hal-02002440 Submitted on 31 Jan 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Molecular Ecology Species are hypotheses : avoid basing connectivity assessments on pillars of sand. Journal:For Molecular Review Ecology Only Manuscript ID: Draft Manuscript Type: Invited Reviews and Syntheses Date Submitted by the Author: n/a Complete List of Authors: Pante, Eric; UMR 7266 CNRS - Université de La Rochelle, Puillandre, Nicolas; MNHN, Systematique & Evolution Viricel, Amélia; UMR 7266 CNRS - -
The Contrasted Evolutionary Fates of Deep-Sea
The contrasted evolutionary fates of deep-sea chemosynthetic mussels (Bivalvia, Bathymodiolinae) Justine Thubaut, Nicolas Puillandre, Jean-Baptiste Faure, Corinne Cruaud, Sarah Samadi To cite this version: Justine Thubaut, Nicolas Puillandre, Jean-Baptiste Faure, Corinne Cruaud, Sarah Samadi. The con- trasted evolutionary fates of deep-sea chemosynthetic mussels (Bivalvia, Bathymodiolinae). Ecology and Evolution, Wiley Open Access, 2013, 3 (14), pp.4748-4766. 10.1002/ece3.749. hal-01250918 HAL Id: hal-01250918 https://hal.archives-ouvertes.fr/hal-01250918 Submitted on 11 Jan 2016 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License The contrasted evolutionary fates of deep-sea chemosynthetic mussels (Bivalvia, Bathymodiolinae)a Justine Thubaut1, Nicolas Puillandre1, Baptiste Faure2,3, Corinne Cruaud4 & Sarah Samadi1 1Departement Systematique et Evolution, Museum National d’Histoire Naturelle, Unite Mixte de Recherche 7138 (UPMC-IRD-MNHN-CNRS), “Systematique Adaptation et Evolution”, 75005 Paris, France 2Station Biologique de Roscoff, Unite Mixte de Recherche 7127, Centre National de la Recherche Scientifique, Universite Pierre et Marie Curie, 29680 Roscoff, France 3Biotope, Service Recherche et Developpement, BP58 34140 Meze, France 4Genoscope, CP 5706, 91057 Evry, France Keywords Abstract Bathymodiolinae, chemosynthetic ecosystem, deep-sea, evolution. -
Discovery of Chemosynthesis-Based Association on the Cretaceous Basal Leatherback Sea Turtle from Japan
Editors' choice Discovery of chemosynthesis-based association on the Cretaceous basal leatherback sea turtle from Japan ROBERT G. JENKINS, ANDRZEJ KAIM, KEI SATO, KAZUHIRO MORIYA, YOSHINORI HIKIDA, and REN HIRAYAMA Jenkins, R.G., Kaim, A., Sato, K., Moriya, K., Hikida, Y., and Hirayama, R. 2017. Discovery of chemosynthesis-based association on the Cretaceous basal leatherback sea turtle from Japan. Acta Palaeontologica Polonica 62 (4): 683–690. We report a Late Cretaceous chemosynthetic community fueled by decomposing basal leatherback sea turtle on the ocean floor in the western Pacific. The fossil association representing this community has been recovered from the matrix of a concretion containing a single carapace of Mesodermochelys sp. from Late Cretaceous outer shelf to upper slope deposit of northern Hokkaido, Japan. The carapace displays boreholes most likely performed by boring bivalves, and is associated with molluscan shells, mainly Provanna cf. nakagawensis and Thyasira tanabei. Since this association is similar to fauna already known from Late Cretaceous hydrocarbon seeps, sunken wood, and plesiosaur-falls in Hokkaido, it is suggested that all types of chemosynthesis-based communities in the Late Cretaceous of western Pacific may have belonged to the same regional pool of animals and were not yet fully differentiated into three independent types of com- munities as it is known today. This finding also indicates that the sulfophilic stage of the vertebrate-fall communities was supported not only by plesiosaur carcasses, which were previously reported, but also by sea turtle carcasses. It highlights the possibility of surviving vertebrate-fall communities through the end-Cretaceous mass extinction event on carcasses of sea turtles which are the only large marine vertebrates surviving this event. -
An Overview of Chemosynthetic Symbioses in Bivalves from the North Atlantic and Mediterranean Sea” by S
Biogeosciences Discuss., 9, C7918–C7923, 2013 Biogeosciences www.biogeosciences-discuss.net/9/C7918/2013/ Discussions © Author(s) 2013. This work is distributed under the Creative Commons Attribute 3.0 License. Interactive comment on “An overview of chemosynthetic symbioses in bivalves from the North Atlantic and Mediterranean Sea” by S. Duperron et al. P. Dando (Referee) [email protected] Received and published: 3 February 2013 General comments The manuscript "An overview of chemosynthetic symbioses in bivalves from the North Atlantic and Mediterranean Sea" presents a detailed account of current knowledge on symbioses in the Mytilidae, Vesicomyidae, Solemyidae, Thyasiridae and Lucinidae. The review concentrates particularly well on the distribution of the bivalve species and differences in their bacteria. The ecology is les well studied, especially factors affect- ing competition between species of bivalves with symbionts and parameters controlling bivalve density and biomass. The Summary Table of species for which there is infor- C7918 mation about the symbiosis is particularly useful. The final manuscript should be a helpful summary of current knowledge in the field. Specific Comments Nucinellidae and Montacutidae (Oliver & Taylor 2012) described two species of the Nucinellidae with bacteriocytes in the gill from an oxygen minimum zone in the Arabian Sea, off Oman, not the Atlantic, as stated on p16833. Although these authors regarded it as probable that the bacteria were sulphur-oxidisers there was no direct evidence for this. Oliver and Taylor (2012) do discuss related species in the Atlantic that might host bacterial symbionts but the gills have not been examined for these. Oliver et al. (2013) report symbiotic bacteria, of more than one morphotype, on the epidermis of specialised bacteriocyte cells in the gills of Syssitomya pourtalesiana (Montacutidae) from the Bay of Biscay, the Norwegian Sea and the Rockall Trough. -
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Une nouvelle espèce de Bathymodiolinae (Mollusca, Bivalvia, Mytilidae) associée à des os de baleine coulés en Méditerranée Jacques PELORCE 289 voie Les Magnolias, F-30240 Le Grau du Roi (France) [email protected] Jean-Maurice POUTIERS Muséum national d’Histoire naturelle, Département Systématique et Évolution, case postale 51, 57 rue Cuvier, F-75231 Paris cedex 05 (France) [email protected] Pelorce J. & Poutiers J.-M. 2009. — Une nouvelle espèce de Bathymodiolinae (Mollusca, Bivalvia, Mytilidae) associée à des os de baleine coulés en Méditerranée. Zoosystema 31 (4) : 975-985. RÉSUMÉ Les espèces du genre Idas Jeff reys, 1876 (Mollusca, Bivalvia, Mytilidae), associées à des substrats organiques coulés en profondeur en Méditerranée et dans l’Atlantique nord-est, sont passées en revue et une nouvelle espèce associée à de vieux os de baleine coulés « Idas » cylindricus n. sp., incluse provisoirement MOTS CLÉS dans le genre Idas s.l., est décrite du Golfe du Lion (Méditerranée occidentale). Mollusca, Bivalvia, Elle est comparée avec Idas (s.l.) simpsoni (Marshall, 1900) qui est l’espèce la Mytilidae, plus proche, et avec les autres espèces voisines de l’Atlantique nord-est et de Bathymodiolinae, Méditerranée. La nouvelle espèce se caractérise par sa taille importante pour le Idas, Méditerranée, genre, sa forme renfl ée et son profi l rectangulaire, son ligament interne épais et nouvelle espèce. marron et la position très avancée de l’umbo. ABSTRACT A new species of bathymodioline mussel (Mollusca, Bivalvia, Mytilidae) associated with sunken whale bones in the Mediterranean Sea. Species of the genus Idas Jeff reys, 1876 (Mollusca, Bivalvia, Mytilidae), associated with sunken organic substrates in the Mediterranean Sea and the North-East Atlantic Ocean, are reviewed. -
1 Abundant Toxin-Related Genes in the Genomes of Beneficial Symbionts
1 Abundant toxin-related genes in the genomes of beneficial symbionts 2 from deep-sea hydrothermal vent mussels 3 4 Lizbeth Sayavedra1, Manuel Kleiner1,*, Ruby Ponnudurai2,*, Silke Wetzel1, Eric 5 Pelletier3,4,5, Valerie Barbe3, Nori Satoh6, Eiichi Shoguchi6, Dennis Fink1, 6 Corinna Breusing7, Thorsten B.H. Reusch7, Philip Rosenstiel8, Markus B. 7 Schilhabel8, Dörte Becher9,10, Thomas Schweder2;9, Stephanie Markert2,9, 8 Nicole Dubilier1,11, Jillian M. Petersen1#& 9 1Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359 10 Bremen, Germany 11 2Institute of Pharmacy, Ernst-Moritz-Arndt-University, Felix-Hausdorff-Strasse 12 3, 17487 Greifswald, Germany 13 3CEA - Genoscope, 2 rue Gaston Crémieux, 91000 Evry, France 14 4CNRS UMR8030, 2 rue Gaston Crémieux, 91000 Evry, France 15 5Université d'Evry Val d'Essonne, 2 rue Gaston Crémieux, 91000 Evry, 16 France 17 6Marine Genomics Unit, Okinawa Institute of Science and Technology 18 Graduate University, Onna, Okinawa 904-0495, Japan 19 7GEOMAR Helmholtz Centre for Ocean Research Kiel, Evolutionary Ecology, 20 Düsternbrooker Weg 20, 24105 Kiel, Germany 21 8Institute of Clinical Molecular Biology (IKMB), Schittenhelmstr. 12 22 24105 Kiel, Germany 1 23 9Institute of Marine Biotechnology, Walther-Rathenau-Strasse 49a, 17489 24 Greifswald, Germany 25 10Institute of Microbiology, Ernst-Moritz-Arndt-University, Friedrich-Ludwig- 26 Jahn-Strasse 15, 17487 Greifswald, Germany 27 11University of Bremen, 28359 Bremen, Germany 28 *Equal contribution 29 #Corresponding author – Jillian M. Petersen 30 Max Planck Institute for Marine Microbiology 31 Celsiusstrasse 1 32 28359 Bremen 33 Germany 34 Tel: +49 421 2028 823 35 Email: [email protected] 36 &Current address 37 Department of Microbiology and Ecosystem Science 38 Division of Microbial Ecology 39 Research Network Chemistry Meets Microbiology 40 University of Vienna 41 Althanstrasse 14 42 1090 Vienna 43 Austria 2 44 Abstract 45 Bathymodiolus mussels live in symbiosis with intracellular sulfur-oxidizing 46 (SOX) bacteria that provide them with nutrition. -
Biodiversità Ed Evoluzione
Allma Mater Studiiorum – Uniiversiità dii Bollogna DOTTORATO DI RICERCA IN BIODIVERSITÀ ED EVOLUZIONE Ciclo XXIII Settore/i scientifico-disciplinare/i di afferenza: BIO - 05 A MOLECULAR PHYLOGENY OF BIVALVE MOLLUSKS: ANCIENT RADIATIONS AND DIVERGENCES AS REVEALED BY MITOCHONDRIAL GENES Presentata da: Dr Federico Plazzi Coordinatore Dottorato Relatore Prof. Barbara Mantovani Dr Marco Passamonti Esame finale anno 2011 of all marine animals, the bivalve molluscs are the most perfectly adapted for life within soft substrata of sand and mud. Sir Charles Maurice Yonge INDEX p. 1..... FOREWORD p. 2..... Plan of the Thesis p. 3..... CHAPTER 1 – INTRODUCTION p. 3..... 1.1. BIVALVE MOLLUSKS: ZOOLOGY, PHYLOGENY, AND BEYOND p. 3..... The phylum Mollusca p. 4..... A survey of class Bivalvia p. 7..... The Opponobranchia: true ctenidia for a truly vexed issue p. 9..... The Autobranchia: between tenets and question marks p. 13..... Doubly Uniparental Inheritance p. 13..... The choice of the “right” molecular marker in bivalve phylogenetics p. 17..... 1.2. MOLECULAR EVOLUTION MODELS, MULTIGENE BAYESIAN ANALYSIS, AND PARTITION CHOICE p. 23..... CHAPTER 2 – TOWARDS A MOLECULAR PHYLOGENY OF MOLLUSKS: BIVALVES’ EARLY EVOLUTION AS REVEALED BY MITOCHONDRIAL GENES. p. 23..... 2.1. INTRODUCTION p. 28..... 2.2. MATERIALS AND METHODS p. 28..... Specimens’ collection and DNA extraction p. 30..... PCR amplification, cloning, and sequencing p. 30..... Sequence alignment p. 32..... Phylogenetic analyses p. 37..... Taxon sampling p. 39..... Dating p. 43..... 2.3. RESULTS p. 43..... Obtained sequences i p. 44..... Sequence analyses p. 45..... Taxon sampling p. 45..... Maximum Likelihood p. 47..... Bayesian Analyses p. 50..... Dating the tree p. -
Ecology of Whale Falls at the Deep-Sea Floor
Oceanography and Marine Biology: an Annual Review 2003, 41, 311–354 © R.N. Gibson and R.J.A. Atkinson, Editors Taylor & Francis ECOLOGY OF WHALE FALLS AT THE DEEP-SEA FLOOR CRAIG R. SMITH1 & AMY R. BACO1,2 1Department of Oceanography, University of Hawaii at Manoa, 1000 Pope Road, Honolulu, HI, 96822, USA e-mail: [email protected] 2present address: Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA e-mail: [email protected] Abstract The falls of large whales (30–160t adult body weight) yield massive pulses of labile organic matter to the deep-sea floor. While scientists have long speculated on the ecological roles of such concentrated food inputs, observations have accumulated since the 1850s to suggest that deep-sea whale falls support a widespread, characteristic fauna. Interest in whale- fall ecology heightened with the discovery in 1989 of a chemoautotrophic assemblage on a whale skeleton in the northeast Pacific; related communities were soon reported from whale falls in other bathyal and abyssal Pacific and Atlantic sites, and from 30mya (million years ago) in the northeast Pacific fossil record. Recent time-series studies of natural and implanted deep- sea whale falls off California, USA indicate that bathyal carcasses pass through at least three successional stages: (1) a mobile-scavenger stage lasting months to years, during which aggregations of sleeper sharks, hagfish, rat-tails and invertebrate scavengers remove whale soft tissue at high rates (40–60kgdϪ1); (2) an enrichment opportunist stage (duration of months to years) during which organi- cally enriched sediments and exposed bones are colonised by dense assemblages (up to 40000mϪ2) of opportunistic polychaetes and crustaceans; (3) a sulphophilic (“or sulphur-loving”) stage lasting for decades, during which a large, species-rich, trophically complex assemblage lives on the skeleton as it emits sul- phide from anaerobic breakdown of bone lipids; this stage includes a chemoau- totrophic component deriving nutrition from sulphur-oxidising bacteria. -
Ecology of Whale Falls at the Deep-Sea Floor
Oceanography and Marine Biology: an Annual Review 2003, 41, 311–354 © R.N. Gibson and R.J.A. Atkinson, Editors Taylor & Francis ECOLOGY OF WHALE FALLS AT THE DEEP-SEA FLOOR CRAIG R. SMITH1 & AMY R. BACO1,2 1Department of Oceanography, University of Hawaii at Manoa, 1000 Pope Road, Honolulu, HI, 96822, USA e-mail: [email protected] 2present address: Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA e-mail: [email protected] Abstract The falls of large whales (30–160t adult body weight) yield massive pulses of labile organic matter to the deep-sea floor. While scientists have long speculated on the ecological roles of such concentrated food inputs, observations have accumulated since the 1850s to suggest that deep-sea whale falls support a widespread, characteristic fauna. Interest in whale- fall ecology heightened with the discovery in 1989 of a chemoautotrophic assemblage on a whale skeleton in the northeast Pacific; related communities were soon reported from whale falls in other bathyal and abyssal Pacific and Atlantic sites, and from 30mya (million years ago) in the northeast Pacific fossil record. Recent time-series studies of natural and implanted deep- sea whale falls off California, USA indicate that bathyal carcasses pass through at least three successional stages: (1) a mobile-scavenger stage lasting months to years, during which aggregations of sleeper sharks, hagfish, rat-tails and invertebrate scavengers remove whale soft tissue at high rates (40–60kgdϪ1); (2) an enrichment opportunist stage (duration of months to years) during which organi- cally enriched sediments and exposed bones are colonised by dense assemblages (up to 40000mϪ2) of opportunistic polychaetes and crustaceans; (3) a sulphophilic (“or sulphur-loving”) stage lasting for decades, during which a large, species-rich, trophically complex assemblage lives on the skeleton as it emits sul- phide from anaerobic breakdown of bone lipids; this stage includes a chemoau- totrophic component deriving nutrition from sulphur-oxidising bacteria. -
Dead Mussels As Food-Stepping Stone Habitats for Deep-Sea Hydrothermal Fauna
Dead mussels as food-stepping stone habitats for deep-sea hydrothermal fauna. Fergus De Faoite (6456340) Master’s Thesis A collaborative project between Utrecht University (UU) and the Royal Netherlands Institute for Sea Research (NIOZ). First Supervisor: Dr. Sabine Gollner (NIOZ) Second Supervisor: Dr. Jack Middelburg (UU) Abstract Hydrothermal vents are patchy ephemeral habitats which are hotspots of productivity in the deep sea. Vent endemic fauna may require intermediate stepping stone habitats to travel from vent to vent with these stepping stones typically comprising of decaying organic matter. Dead Bathymodiolus and Mytilus mussels were placed in ~2200 meters water depth at approximately 4 km distance from the Rainbow Vent Field for one year in order to measure the propensity for vent fauna to use dead mussels as stepping stone habitats. The vent endemic Dirivultidae copepods, Bathymodiolus mussels and generalist Hesionidae and Capillidae polychaetes settled among the mussels. Species richness and evenness was very low among the meiofauna with generalist Tisbe copepods accounting for almost all of the copepods. Macrofaunal samples were much richer and more even in comparison. The meat from the vent endemic Bathymodiolus mussels was consumed after one year while there was still some meat and a sulphurous smell present in the shallow water Mytilus mussels, indicating that decomposition was still taking place. This study indicates that dead mussels could act as a stepping stone habitat for some symbiotic and non-symbiotic vent fauna as such animals were found in the samples. Juvenile Bathymodiolus mussels settled among the dead mussels indicating that conditions were suitable for settlement for symbiotic fauna. -
A Mussel Colonizing Deep-Sea Whale Bones in the Northwest Pacific (Bivalvia: Mytilidae)
VENUS 66 (1-2): 49-55, 2007 Benthomodiolus geikotsucola n. sp.: A Mussel Colonizing Deep-sea Whale Bones in the Northwest Pacific (Bivalvia: Mytilidae) 1Takashi Okutani and 2Jun-Ichi Miyazaki 1Japan Agency for Marine-Earth Science & Technology (JAMSTEC), 2-15 Natsushima, Yokosuka, Kanagawa 237-0061, Japan; [email protected] 2Faculty of Education & Human Sciences, University of Yamanashi, Kofu, Yamanashi 400-8510, Japan Abstract: A new mytilid mussel found colonizing a whale skeleton at a depth of 4020 m on the Torishima Seamount in the Northwest Pacific is described. It is the third named species in the genus Benthomodiolus Dell, 1987. Only minor superficial characters separate it from the two other known species; these are a lack of both periostracal hairs and radial lines and the fact that this new taxon is the only species in the genus living attached to whale bones. In addition, however, the morphology of the byssal muscles in this species is different from the other two. Keywords: new species, whale bone, Mytilidae, deep sea Introduction The skeleton of a whale of the species Balaenoptera edeni was discovered on the summit of the Torishima Seamount at a depth of 4036 m in 1992 during the Shinkai 6500 Dive 148 (Wada, 1993; Fujioka et al., 1993). Since then this site has been revisited from time to time, such as in 1993 (Dive 174: Naganuma et al., 1996), in 1997 (Dive 369), and again in 2005 (Dive 895: this paper). Colonies of a mytilid mussel observed on every part of the whale skeleton were sampled on each occasion, but they have been left unstudied up to this date.