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BIOPAPUA Expedition Highlighting Deep-Sea Benthic Biodiversity of Papua New- Guinea
Biopapua Expedition – Progress report MUSÉUM NATIONAL D'HISTOIRE NATURELLE 57 rue Cuvier 75005 PARIS‐ France BIOPAPUA Expedition Highlighting deep-sea benthic Biodiversity of Papua New- Guinea Submitted by: Muséum National d'Histoire Naturelle (MNHN) Represented by (co‐PI): Dr Sarah Samadi (Researcher, IRD) Dr Philippe Bouchet (Professor, MNHN) Dr Laure Corbari (Research associate, MNHN) 1 Biopapua Expedition – Progress report Contents Foreword 3 1‐ Our understanding of deep‐sea biodiversity of PNG 4 2 ‐ Tropical Deep‐Sea Benthos program 5 3‐ Biopapua Expedition 7 4‐ Collection management 15 5‐ Preliminary results 17 6‐ Outreach and publications 23 7‐ Appendices 26 Appendix 1 27 NRI, note n°. 302/2010 on 26th march, 2010, acceptance of Biopapua reseach programme Appendix 2 28 Biopapua cruise Report, submitted by Ralph MANA (UPNG) A Report Submitted to School of Natural and Physical Sciences, University of Papua New Guinea Appendix 3 39 Chan, T.Y (2012) A new genus of deep‐sea solenocerid shrimp (Crustacea: Decapoda: Penaeoidea) from the Papua New Guinea. Journal of Crustacean Biology, 32(3), 489‐495. Appendix 4 47 Pante E, Corbari L., Thubaut J., Chan TY, Mana R., Boisselier MC, Bouchet P., Samadi S. (In Press). Exploration of the deep‐sea fauna of Papua New Guinea. Oceanography Appendix 5 60 Richer de Forges B. & Corbari L. (2012) A new species of Oxypleurodon Miers, 1886 (Crustacea Brachyura, Majoidea) from the Bismark Sea, Papua New Guinea. Zootaxa. 3320: 56–60 Appendix 6 66 Taxonomic list: Specimens in MNHN and Taiwan collections 2 Biopapua Expedition – Progress report Foreword Biopapua cruise was a MNHN/IRD deep‐sea cruise in partnership with the School of Natural and Physical Sciences, University of Papua New Guinea. -
Species Are Hypotheses: Avoid Connectivity Assessments Based on Pillars of Sand Eric Pante, Nicolas Puillandre, Amélia Viricel, Sophie Arnaud-Haond, D
Species are hypotheses: avoid connectivity assessments based on pillars of sand Eric Pante, Nicolas Puillandre, Amélia Viricel, Sophie Arnaud-Haond, D. Aurelle, Magalie Castelin, Anne Chenuil, Christophe Destombe, Didier Forcioli, Myriam Valero, et al. To cite this version: Eric Pante, Nicolas Puillandre, Amélia Viricel, Sophie Arnaud-Haond, D. Aurelle, et al.. Species are hypotheses: avoid connectivity assessments based on pillars of sand. Molecular Ecology, Wiley, 2015, 24 (3), pp.525-544. hal-02002440 HAL Id: hal-02002440 https://hal.archives-ouvertes.fr/hal-02002440 Submitted on 31 Jan 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Molecular Ecology Species are hypotheses : avoid basing connectivity assessments on pillars of sand. Journal:For Molecular Review Ecology Only Manuscript ID: Draft Manuscript Type: Invited Reviews and Syntheses Date Submitted by the Author: n/a Complete List of Authors: Pante, Eric; UMR 7266 CNRS - Université de La Rochelle, Puillandre, Nicolas; MNHN, Systematique & Evolution Viricel, Amélia; UMR 7266 CNRS - -
The Contrasted Evolutionary Fates of Deep-Sea
The contrasted evolutionary fates of deep-sea chemosynthetic mussels (Bivalvia, Bathymodiolinae) Justine Thubaut, Nicolas Puillandre, Jean-Baptiste Faure, Corinne Cruaud, Sarah Samadi To cite this version: Justine Thubaut, Nicolas Puillandre, Jean-Baptiste Faure, Corinne Cruaud, Sarah Samadi. The con- trasted evolutionary fates of deep-sea chemosynthetic mussels (Bivalvia, Bathymodiolinae). Ecology and Evolution, Wiley Open Access, 2013, 3 (14), pp.4748-4766. 10.1002/ece3.749. hal-01250918 HAL Id: hal-01250918 https://hal.archives-ouvertes.fr/hal-01250918 Submitted on 11 Jan 2016 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License The contrasted evolutionary fates of deep-sea chemosynthetic mussels (Bivalvia, Bathymodiolinae)a Justine Thubaut1, Nicolas Puillandre1, Baptiste Faure2,3, Corinne Cruaud4 & Sarah Samadi1 1Departement Systematique et Evolution, Museum National d’Histoire Naturelle, Unite Mixte de Recherche 7138 (UPMC-IRD-MNHN-CNRS), “Systematique Adaptation et Evolution”, 75005 Paris, France 2Station Biologique de Roscoff, Unite Mixte de Recherche 7127, Centre National de la Recherche Scientifique, Universite Pierre et Marie Curie, 29680 Roscoff, France 3Biotope, Service Recherche et Developpement, BP58 34140 Meze, France 4Genoscope, CP 5706, 91057 Evry, France Keywords Abstract Bathymodiolinae, chemosynthetic ecosystem, deep-sea, evolution. -
Discovery of Chemosynthesis-Based Association on the Cretaceous Basal Leatherback Sea Turtle from Japan
Editors' choice Discovery of chemosynthesis-based association on the Cretaceous basal leatherback sea turtle from Japan ROBERT G. JENKINS, ANDRZEJ KAIM, KEI SATO, KAZUHIRO MORIYA, YOSHINORI HIKIDA, and REN HIRAYAMA Jenkins, R.G., Kaim, A., Sato, K., Moriya, K., Hikida, Y., and Hirayama, R. 2017. Discovery of chemosynthesis-based association on the Cretaceous basal leatherback sea turtle from Japan. Acta Palaeontologica Polonica 62 (4): 683–690. We report a Late Cretaceous chemosynthetic community fueled by decomposing basal leatherback sea turtle on the ocean floor in the western Pacific. The fossil association representing this community has been recovered from the matrix of a concretion containing a single carapace of Mesodermochelys sp. from Late Cretaceous outer shelf to upper slope deposit of northern Hokkaido, Japan. The carapace displays boreholes most likely performed by boring bivalves, and is associated with molluscan shells, mainly Provanna cf. nakagawensis and Thyasira tanabei. Since this association is similar to fauna already known from Late Cretaceous hydrocarbon seeps, sunken wood, and plesiosaur-falls in Hokkaido, it is suggested that all types of chemosynthesis-based communities in the Late Cretaceous of western Pacific may have belonged to the same regional pool of animals and were not yet fully differentiated into three independent types of com- munities as it is known today. This finding also indicates that the sulfophilic stage of the vertebrate-fall communities was supported not only by plesiosaur carcasses, which were previously reported, but also by sea turtle carcasses. It highlights the possibility of surviving vertebrate-fall communities through the end-Cretaceous mass extinction event on carcasses of sea turtles which are the only large marine vertebrates surviving this event. -
An Overview of Chemosynthetic Symbioses in Bivalves from the North Atlantic and Mediterranean Sea” by S
Biogeosciences Discuss., 9, C7918–C7923, 2013 Biogeosciences www.biogeosciences-discuss.net/9/C7918/2013/ Discussions © Author(s) 2013. This work is distributed under the Creative Commons Attribute 3.0 License. Interactive comment on “An overview of chemosynthetic symbioses in bivalves from the North Atlantic and Mediterranean Sea” by S. Duperron et al. P. Dando (Referee) [email protected] Received and published: 3 February 2013 General comments The manuscript "An overview of chemosynthetic symbioses in bivalves from the North Atlantic and Mediterranean Sea" presents a detailed account of current knowledge on symbioses in the Mytilidae, Vesicomyidae, Solemyidae, Thyasiridae and Lucinidae. The review concentrates particularly well on the distribution of the bivalve species and differences in their bacteria. The ecology is les well studied, especially factors affect- ing competition between species of bivalves with symbionts and parameters controlling bivalve density and biomass. The Summary Table of species for which there is infor- C7918 mation about the symbiosis is particularly useful. The final manuscript should be a helpful summary of current knowledge in the field. Specific Comments Nucinellidae and Montacutidae (Oliver & Taylor 2012) described two species of the Nucinellidae with bacteriocytes in the gill from an oxygen minimum zone in the Arabian Sea, off Oman, not the Atlantic, as stated on p16833. Although these authors regarded it as probable that the bacteria were sulphur-oxidisers there was no direct evidence for this. Oliver and Taylor (2012) do discuss related species in the Atlantic that might host bacterial symbionts but the gills have not been examined for these. Oliver et al. (2013) report symbiotic bacteria, of more than one morphotype, on the epidermis of specialised bacteriocyte cells in the gills of Syssitomya pourtalesiana (Montacutidae) from the Bay of Biscay, the Norwegian Sea and the Rockall Trough. -
1 Abundant Toxin-Related Genes in the Genomes of Beneficial Symbionts
1 Abundant toxin-related genes in the genomes of beneficial symbionts 2 from deep-sea hydrothermal vent mussels 3 4 Lizbeth Sayavedra1, Manuel Kleiner1,*, Ruby Ponnudurai2,*, Silke Wetzel1, Eric 5 Pelletier3,4,5, Valerie Barbe3, Nori Satoh6, Eiichi Shoguchi6, Dennis Fink1, 6 Corinna Breusing7, Thorsten B.H. Reusch7, Philip Rosenstiel8, Markus B. 7 Schilhabel8, Dörte Becher9,10, Thomas Schweder2;9, Stephanie Markert2,9, 8 Nicole Dubilier1,11, Jillian M. Petersen1#& 9 1Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359 10 Bremen, Germany 11 2Institute of Pharmacy, Ernst-Moritz-Arndt-University, Felix-Hausdorff-Strasse 12 3, 17487 Greifswald, Germany 13 3CEA - Genoscope, 2 rue Gaston Crémieux, 91000 Evry, France 14 4CNRS UMR8030, 2 rue Gaston Crémieux, 91000 Evry, France 15 5Université d'Evry Val d'Essonne, 2 rue Gaston Crémieux, 91000 Evry, 16 France 17 6Marine Genomics Unit, Okinawa Institute of Science and Technology 18 Graduate University, Onna, Okinawa 904-0495, Japan 19 7GEOMAR Helmholtz Centre for Ocean Research Kiel, Evolutionary Ecology, 20 Düsternbrooker Weg 20, 24105 Kiel, Germany 21 8Institute of Clinical Molecular Biology (IKMB), Schittenhelmstr. 12 22 24105 Kiel, Germany 1 23 9Institute of Marine Biotechnology, Walther-Rathenau-Strasse 49a, 17489 24 Greifswald, Germany 25 10Institute of Microbiology, Ernst-Moritz-Arndt-University, Friedrich-Ludwig- 26 Jahn-Strasse 15, 17487 Greifswald, Germany 27 11University of Bremen, 28359 Bremen, Germany 28 *Equal contribution 29 #Corresponding author – Jillian M. Petersen 30 Max Planck Institute for Marine Microbiology 31 Celsiusstrasse 1 32 28359 Bremen 33 Germany 34 Tel: +49 421 2028 823 35 Email: [email protected] 36 &Current address 37 Department of Microbiology and Ecosystem Science 38 Division of Microbial Ecology 39 Research Network Chemistry Meets Microbiology 40 University of Vienna 41 Althanstrasse 14 42 1090 Vienna 43 Austria 2 44 Abstract 45 Bathymodiolus mussels live in symbiosis with intracellular sulfur-oxidizing 46 (SOX) bacteria that provide them with nutrition. -
Ecology of Whale Falls at the Deep-Sea Floor
Oceanography and Marine Biology: an Annual Review 2003, 41, 311–354 © R.N. Gibson and R.J.A. Atkinson, Editors Taylor & Francis ECOLOGY OF WHALE FALLS AT THE DEEP-SEA FLOOR CRAIG R. SMITH1 & AMY R. BACO1,2 1Department of Oceanography, University of Hawaii at Manoa, 1000 Pope Road, Honolulu, HI, 96822, USA e-mail: [email protected] 2present address: Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA e-mail: [email protected] Abstract The falls of large whales (30–160t adult body weight) yield massive pulses of labile organic matter to the deep-sea floor. While scientists have long speculated on the ecological roles of such concentrated food inputs, observations have accumulated since the 1850s to suggest that deep-sea whale falls support a widespread, characteristic fauna. Interest in whale- fall ecology heightened with the discovery in 1989 of a chemoautotrophic assemblage on a whale skeleton in the northeast Pacific; related communities were soon reported from whale falls in other bathyal and abyssal Pacific and Atlantic sites, and from 30mya (million years ago) in the northeast Pacific fossil record. Recent time-series studies of natural and implanted deep- sea whale falls off California, USA indicate that bathyal carcasses pass through at least three successional stages: (1) a mobile-scavenger stage lasting months to years, during which aggregations of sleeper sharks, hagfish, rat-tails and invertebrate scavengers remove whale soft tissue at high rates (40–60kgdϪ1); (2) an enrichment opportunist stage (duration of months to years) during which organi- cally enriched sediments and exposed bones are colonised by dense assemblages (up to 40000mϪ2) of opportunistic polychaetes and crustaceans; (3) a sulphophilic (“or sulphur-loving”) stage lasting for decades, during which a large, species-rich, trophically complex assemblage lives on the skeleton as it emits sul- phide from anaerobic breakdown of bone lipids; this stage includes a chemoau- totrophic component deriving nutrition from sulphur-oxidising bacteria. -
Ecology of Whale Falls at the Deep-Sea Floor
Oceanography and Marine Biology: an Annual Review 2003, 41, 311–354 © R.N. Gibson and R.J.A. Atkinson, Editors Taylor & Francis ECOLOGY OF WHALE FALLS AT THE DEEP-SEA FLOOR CRAIG R. SMITH1 & AMY R. BACO1,2 1Department of Oceanography, University of Hawaii at Manoa, 1000 Pope Road, Honolulu, HI, 96822, USA e-mail: [email protected] 2present address: Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA e-mail: [email protected] Abstract The falls of large whales (30–160t adult body weight) yield massive pulses of labile organic matter to the deep-sea floor. While scientists have long speculated on the ecological roles of such concentrated food inputs, observations have accumulated since the 1850s to suggest that deep-sea whale falls support a widespread, characteristic fauna. Interest in whale- fall ecology heightened with the discovery in 1989 of a chemoautotrophic assemblage on a whale skeleton in the northeast Pacific; related communities were soon reported from whale falls in other bathyal and abyssal Pacific and Atlantic sites, and from 30mya (million years ago) in the northeast Pacific fossil record. Recent time-series studies of natural and implanted deep- sea whale falls off California, USA indicate that bathyal carcasses pass through at least three successional stages: (1) a mobile-scavenger stage lasting months to years, during which aggregations of sleeper sharks, hagfish, rat-tails and invertebrate scavengers remove whale soft tissue at high rates (40–60kgdϪ1); (2) an enrichment opportunist stage (duration of months to years) during which organi- cally enriched sediments and exposed bones are colonised by dense assemblages (up to 40000mϪ2) of opportunistic polychaetes and crustaceans; (3) a sulphophilic (“or sulphur-loving”) stage lasting for decades, during which a large, species-rich, trophically complex assemblage lives on the skeleton as it emits sul- phide from anaerobic breakdown of bone lipids; this stage includes a chemoau- totrophic component deriving nutrition from sulphur-oxidising bacteria. -
A Mussel Colonizing Deep-Sea Whale Bones in the Northwest Pacific (Bivalvia: Mytilidae)
VENUS 66 (1-2): 49-55, 2007 Benthomodiolus geikotsucola n. sp.: A Mussel Colonizing Deep-sea Whale Bones in the Northwest Pacific (Bivalvia: Mytilidae) 1Takashi Okutani and 2Jun-Ichi Miyazaki 1Japan Agency for Marine-Earth Science & Technology (JAMSTEC), 2-15 Natsushima, Yokosuka, Kanagawa 237-0061, Japan; [email protected] 2Faculty of Education & Human Sciences, University of Yamanashi, Kofu, Yamanashi 400-8510, Japan Abstract: A new mytilid mussel found colonizing a whale skeleton at a depth of 4020 m on the Torishima Seamount in the Northwest Pacific is described. It is the third named species in the genus Benthomodiolus Dell, 1987. Only minor superficial characters separate it from the two other known species; these are a lack of both periostracal hairs and radial lines and the fact that this new taxon is the only species in the genus living attached to whale bones. In addition, however, the morphology of the byssal muscles in this species is different from the other two. Keywords: new species, whale bone, Mytilidae, deep sea Introduction The skeleton of a whale of the species Balaenoptera edeni was discovered on the summit of the Torishima Seamount at a depth of 4036 m in 1992 during the Shinkai 6500 Dive 148 (Wada, 1993; Fujioka et al., 1993). Since then this site has been revisited from time to time, such as in 1993 (Dive 174: Naganuma et al., 1996), in 1997 (Dive 369), and again in 2005 (Dive 895: this paper). Colonies of a mytilid mussel observed on every part of the whale skeleton were sampled on each occasion, but they have been left unstudied up to this date. -
Whale-Fall Ecosystems: Recent Insights Into Ecology, Paleoecology, and Evolution
MA07CH24-Smith ARI 28 October 2014 12:32 Whale-Fall Ecosystems: Recent Insights into Ecology, Paleoecology, and Evolution Craig R. Smith,1 Adrian G. Glover,2 Tina Treude,3 Nicholas D. Higgs,4 and Diva J. Amon1 1Department of Oceanography, University of Hawaii, Honolulu, Hawaii 96822; email: [email protected], [email protected] 2Department of Life Sciences, Natural History Museum, SW7 5BD London, United Kingdom; email: [email protected] 3GEOMAR Helmholtz Centre for Ocean Research Kiel, 24148 Kiel, Germany; email: [email protected] 4Marine Institute, Plymouth University, PL4 8AA Plymouth, United Kingdom; email: [email protected] Annu. Rev. Mar. Sci. 2015. 7:571–96 Keywords First published online as a Review in Advance on ecological succession, chemosynthesis, speciation, vent/seep faunas, September 10, 2014 Osedax, sulfate reduction The Annual Review of Marine Science is online at marine.annualreviews.org Abstract This article’s doi: Whale falls produce remarkable organic- and sulfide-rich habitat islands at 10.1146/annurev-marine-010213-135144 Access provided by 168.105.82.76 on 01/12/15. For personal use only. the seafloor. The past decade has seen a dramatic increase in studies of mod- Copyright c 2015 by Annual Reviews. ern and fossil whale remains, yielding exciting new insights into whale-fall All rights reserved Annu. Rev. Marine. Sci. 2015.7:571-596. Downloaded from www.annualreviews.org ecosystems. Giant body sizes and especially high bone-lipid content allow great-whale carcasses to support a sequence of heterotrophic and chemosyn- thetic microbial assemblages in the energy-poor deep sea. -
Granada Basin, Betic Cordillera, Spain)
Geobios 50 (2017) 173–195 Available online at ScienceDirect www.sciencedirect.com Original article A lithostratigraphic and palaeoenvironmental framework for the late Miocene El Caracolar section (Granada Basin, Betic Cordillera, Spain) § and description of decapod crustaceans a b,c, d Guillermo Dı´az-Medina , Matu´ sˇ Hyzˇny´ *, Adie¨l A. Klompmaker a Plaza de las Vin˜as n18 PC, 18200 Maracena, Granada, Spain b Department of Geology and Paleontology, Faculty of Natural Sciences, Comenius University, Mlynska´ dolina, Ilkovicˇova 6, 84215 Bratislava, Slovakia c Geological-Paleontological Department, Natural History Museum Vienna, Burgring 7, 1010 Vienna, Austria d Florida Museum of Natural History, University of Florida, 1659 Museum Road, PO Box 117800, Gainesville, FL 32611, USA A R T I C L E I N F O A B S T R A C T Article history: The locality of El Caracolar in the Granada Basin (Central Betic Cordillera, southern Spain) has yielded a Received 4 November 2016 rich late Miocene assemblages composed of marine invertebrates and vertebrates, accompanied by Accepted 20 April 2017 microfossils, macroflora and trace fossils. Exposed strata consisting of sands, sandy siltstones, silty Available online 5 May 2017 sandstones, siltstones and calcirudites are divided into four local units. Lithostratigraphically, the studied section is placed between the top of the La Peza Formation and the Que´ntar Formation. Based on Keywords: foraminifers, the age of units 2 and 3 is estimated to be early Tortonian (11.0–9.9 Ma), whereas units Decapoda 1 and 4 do not yield any reliable biostratigraphic markers. The diverse biotic association suggests that Lithostratigraphy deposition took place in a near-shore outer neritic zone of a narrow to open seaway in a mesotrophic Miocene Palaeoenvironment regime, responsible for the establishment of a chemosynthetic community under (sub)tropical Proto-Mediterranean Sea conditions. -
Bathymodiolin Mussels Associated with a Miocene Whale Fall from Italy
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Plymouth Electronic Archive and Research Library Bathymodioline mussel dominated Miocene whale fall from Italy Silvia Danise1,2, Luca Bertolaso3 and Stefano Dominici4 1 University of Georgia, 210 Field Street, Athens, GA 30602, United States. 2 Plymouth University, Drake Circus, Plymouth, PL4 8AA, United Kingdom. email: [email protected] 3 Via Manzotti 35, 42015 Correggio, RE, Italy. email: [email protected] 4 Museo di Storia Naturale, Sezione di Geologia e Paleontologia, Università di Firenze, via La Pira 4, 50121, Firenze, Italy. email: [email protected] Short title: Miocene whale fall Keywords: Whale fall, Bathymodiolinae, Adipicola, Miocene, Northern Apennines, Cold seep. Manuscript received 10 February 2016 Revised manuscript accepted 21 May 2016 Zoobank registration number urn:lsid:zoobank.org:pub:3ADC2B94- 9CBF-4305-A001-412BC371EC51 Zoobank registration date 23 May 2016 Published online 1 June 2016 Editor Johannes Pignatti ABSTRACT The bones of an unidentified odontocete from the Langhian Pantano Formation (~ 15 million years ago), found near the town of Carpineti (Reggio Emilia), Northern Italy, are associated with more than two hundred specimens of the bathymodioline mussel Adipicola apenninica n. sp., rare specimens of Thyasira sp. and one Lucinidae indet. Based on comparisons with modern and other fossil whale fall communities, the fossil molluscs associated with the odontocete represent a whale fall community during the sulphophilic stage of the ecological succession. Our finding indicates the presence of chemosynthetic communities associated with organic remains in the proto-Mediterranean-Atlantic region at least from the middle Miocene.