Evolution: Like Any Other Science It Is Predictable
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Trait Changes Induced by Species Interactions in Two Phenotypically Distinct Strains of a Marine Dinoflagellate
The ISME Journal (2016) 10, 2658–2668 © 2016 International Society for Microbial Ecology All rights reserved 1751-7362/16 www.nature.com/ismej ORIGINAL ARTICLE Trait changes induced by species interactions in two phenotypically distinct strains of a marine dinoflagellate Sylke Wohlrab, Urban Tillmann, Allan Cembella and Uwe John Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Section Ecological Chemistry, Bremerhaven, Germany Populations of the toxigenic marine dinoflagellate Alexandrium are composed of multiple genotypes that display phenotypic variation for traits known to influence top-down processes, such as the ability to lyse co-occurring competitors and prospective grazers. We performed a detailed molecular analysis of species interactions to determine how different genotypes perceive and respond to other species. In a controlled laboratory culture study, we exposed two A. fundyense strains that differ in their capacity to produce lytic compounds to the dinoflagellate grazer Polykrikos kofoidii, and analyzed transcriptomic changes during this interaction. Approximately 5% of all analyzed genes were differentially expressed between the two Alexandrium strains under control conditions (without grazer presence) with fold-change differences that were proportionally higher than those observed in grazer treatments. Species interactions led to the genotype-specific expression of genes involved in endocytotic processes, cell cycle control and outer membrane properties, and signal transduction and gene expression -
Grazing Impacts of the Heterotrophic Dinoflagellate Polykrikos Kofoidii on a Bloom of Gymnodinium Catenatum
AQUATIC MICROBIAL ECOLOGY Published April 30 Aquat Microb Ecol NOTE Grazing impacts of the heterotrophic dinoflagellate Polykrikos kofoidii on a bloom of Gymnodinium catenatum Yukihiko Matsuyama'f*,Masahide Miyamoto2, Yuichi ~otani' 'National Research Institute of Fisheries and Environment of Inland Sea, Maruishi, Ohno, Saeki, Hiroshima 739-0452, Japan 2KumamotoAriake Fisheries Direction Office, Iwasaki, Tamana, Kumamoto 865-0016, Japan ABSTRACT: In 1998, a red tide of the paralytic shellfish an assessment of the natural population of G. catena- poisoning (PSP)-producing dinoflagellate Gymnodinium cate- turn coupled with a laboratory incubation experiment naturn Graham occurred in Yatsushiro Sea, western Japan. to evaluate the bloom fate. We present data showing The dramatic decline of dominant G. catenatum cells oc- curred during the field and laboratory assessments, accompa- considerable predation by the pseudocolonial hetero- nied with growth of the heterotrophic dinoflagellate Poly- trophic dinoflagellate Polykrikos kofoidii Chatton on knkos kofoidii Chatton. Microscopic observations on both the dominant G. catenatum population, and discuss field and laboratory cultured bloom water revealed that the ecological importance of the genus Polykrikos and >50% of P. kofoidii predated on the natural population of G. catenaturn, and 1 to 8 G. catenatum cells were found in its grazing impact on harmful algal blooms. food vacuoles of P. kofoidii pseudocolonies. Our results sug- Materials and methods. Filed population surveys: gest that predation by P. kofoidii contributes to the cessation The Gymnodinium catenatum bloom occurred from 19 of a G. catenatum bloom. January to 5 February in Miyano-Gawachi Bay, west- ern Yatsushiro Sea, Kyushu Island (Fig. 1). Five cruises KEY WORDS: PSP - Gymnodimurn catenatum . -
A Parasite of Marine Rotifers: a New Lineage of Dinokaryotic Dinoflagellates (Dinophyceae)
Hindawi Publishing Corporation Journal of Marine Biology Volume 2015, Article ID 614609, 5 pages http://dx.doi.org/10.1155/2015/614609 Research Article A Parasite of Marine Rotifers: A New Lineage of Dinokaryotic Dinoflagellates (Dinophyceae) Fernando Gómez1 and Alf Skovgaard2 1 Laboratory of Plankton Systems, Oceanographic Institute, University of Sao˜ Paulo, Prac¸a do Oceanografico´ 191, Cidade Universitaria,´ 05508-900 Butanta,˜ SP, Brazil 2Department of Veterinary Disease Biology, University of Copenhagen, Stigbøjlen 7, 1870 Frederiksberg C, Denmark Correspondence should be addressed to Fernando Gomez;´ [email protected] Received 11 July 2015; Accepted 27 August 2015 Academic Editor: Gerardo R. Vasta Copyright © 2015 F. Gomez´ and A. Skovgaard. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Dinoflagellate infections have been reported for different protistan and animal hosts. We report, for the first time, the association between a dinoflagellate parasite and a rotifer host, tentatively Synchaeta sp. (Rotifera), collected from the port of Valencia, NW Mediterranean Sea. The rotifer contained a sporangium with 100–200 thecate dinospores that develop synchronically through palintomic sporogenesis. This undescribed dinoflagellate forms a new and divergent fast-evolved lineage that branches amongthe dinokaryotic dinoflagellates. 1. Introduction form independent lineages with no evident relation to other dinoflagellates [12]. In this study, we describe a new lineage of The alveolates (or Alveolata) are a major lineage of protists an undescribed parasitic dinoflagellate that largely diverged divided into three main phyla: ciliates, apicomplexans, and from other known dinoflagellates. -
Multigene Eukaryote Phylogeny Reveals the Likely Protozoan Ancestors of Opis- Thokonts (Animals, Fungi, Choanozoans) and Amoebozoa
Accepted Manuscript Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opis- thokonts (animals, fungi, choanozoans) and Amoebozoa Thomas Cavalier-Smith, Ema E. Chao, Elizabeth A. Snell, Cédric Berney, Anna Maria Fiore-Donno, Rhodri Lewis PII: S1055-7903(14)00279-6 DOI: http://dx.doi.org/10.1016/j.ympev.2014.08.012 Reference: YMPEV 4996 To appear in: Molecular Phylogenetics and Evolution Received Date: 24 January 2014 Revised Date: 2 August 2014 Accepted Date: 11 August 2014 Please cite this article as: Cavalier-Smith, T., Chao, E.E., Snell, E.A., Berney, C., Fiore-Donno, A.M., Lewis, R., Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opisthokonts (animals, fungi, choanozoans) and Amoebozoa, Molecular Phylogenetics and Evolution (2014), doi: http://dx.doi.org/10.1016/ j.ympev.2014.08.012 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. 1 1 Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opisthokonts 2 (animals, fungi, choanozoans) and Amoebozoa 3 4 Thomas Cavalier-Smith1, Ema E. Chao1, Elizabeth A. Snell1, Cédric Berney1,2, Anna Maria 5 Fiore-Donno1,3, and Rhodri Lewis1 6 7 1Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK. -
Protist Phylogeny and the High-Level Classification of Protozoa
Europ. J. Protistol. 39, 338–348 (2003) © Urban & Fischer Verlag http://www.urbanfischer.de/journals/ejp Protist phylogeny and the high-level classification of Protozoa Thomas Cavalier-Smith Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK; E-mail: [email protected] Received 1 September 2003; 29 September 2003. Accepted: 29 September 2003 Protist large-scale phylogeny is briefly reviewed and a revised higher classification of the kingdom Pro- tozoa into 11 phyla presented. Complementary gene fusions reveal a fundamental bifurcation among eu- karyotes between two major clades: the ancestrally uniciliate (often unicentriolar) unikonts and the an- cestrally biciliate bikonts, which undergo ciliary transformation by converting a younger anterior cilium into a dissimilar older posterior cilium. Unikonts comprise the ancestrally unikont protozoan phylum Amoebozoa and the opisthokonts (kingdom Animalia, phylum Choanozoa, their sisters or ancestors; and kingdom Fungi). They share a derived triple-gene fusion, absent from bikonts. Bikonts contrastingly share a derived gene fusion between dihydrofolate reductase and thymidylate synthase and include plants and all other protists, comprising the protozoan infrakingdoms Rhizaria [phyla Cercozoa and Re- taria (Radiozoa, Foraminifera)] and Excavata (phyla Loukozoa, Metamonada, Euglenozoa, Percolozoa), plus the kingdom Plantae [Viridaeplantae, Rhodophyta (sisters); Glaucophyta], the chromalveolate clade, and the protozoan phylum Apusozoa (Thecomonadea, Diphylleida). Chromalveolates comprise kingdom Chromista (Cryptista, Heterokonta, Haptophyta) and the protozoan infrakingdom Alveolata [phyla Cilio- phora and Miozoa (= Protalveolata, Dinozoa, Apicomplexa)], which diverged from a common ancestor that enslaved a red alga and evolved novel plastid protein-targeting machinery via the host rough ER and the enslaved algal plasma membrane (periplastid membrane). -
Protozoologica ACTA Doi:10.4467/16890027AP.17.016.7497 PROTOZOOLOGICA
Acta Protozool. (2017) 56: 181–189 www.ejournals.eu/Acta-Protozoologica ACTA doi:10.4467/16890027AP.17.016.7497 PROTOZOOLOGICA Allovahlkampfia minuta nov. sp., (Acrasidae, Heterolobosea, Excavata) a New Soil Amoeba at the Boundary of the Acrasid Cellular Slime Moulds Alvaro DE OBESO FERNADEZ DEL VALLE, Sutherland K. MACIVER Biomedical Sciences, Edinburgh Medical School, University of Edinburgh, Scotland, UK Abstract. We report the isolation of a new species of Allovahlkampfia, a small cyst-forming heterolobosean soil amoeba. Phylogenetic analysis of the 18S rDNA and the internal transcribed spacers indicates that Allovahlkampfia is more closely related to the acrasids than to other heterolobosean groups and indicates that the new strain (GF1) groups with Allovahlkampfia tibetiensisand A. nederlandiensis despite being significantly smaller than these and any other described Allovahlkampfia species. GF1 forms aggregated cyst masses similar to the early stages of Acrasis sorocarp development, in agreement with the view that it shares ancestry with the acrasids. Time-lapse video mi- croscopy reveals that trophozoites are attracted to individuals that have already begun to encyst or that have formed cysts. Although some members of the genus are known to be pathogenic the strain GF1 does not grow above 28oC nor at elevated osmotic conditions, indicating that it is unlikely to be a pathogen. INTRODUCTION and habit. The heterolobosean acrasid slime moulds are very similar to the amoebozoan slime moulds too in life cycle, but these remarkable similarities in ap- The class heterolobosea was first created on mor- pearance and function are most probably due to parallel phological grounds to unite the schizopyrenid amoe- bae/amoeboflagellates with the acrasid slime moulds evolution. -
Author's Manuscript (764.7Kb)
1 BROADLY SAMPLED TREE OF EUKARYOTIC LIFE Broadly Sampled Multigene Analyses Yield a Well-resolved Eukaryotic Tree of Life Laura Wegener Parfrey1†, Jessica Grant2†, Yonas I. Tekle2,6, Erica Lasek-Nesselquist3,4, Hilary G. Morrison3, Mitchell L. Sogin3, David J. Patterson5, Laura A. Katz1,2,* 1Program in Organismic and Evolutionary Biology, University of Massachusetts, 611 North Pleasant Street, Amherst, Massachusetts 01003, USA 2Department of Biological Sciences, Smith College, 44 College Lane, Northampton, Massachusetts 01063, USA 3Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, 7 MBL Street, Woods Hole, Massachusetts 02543, USA 4Department of Ecology and Evolutionary Biology, Brown University, 80 Waterman Street, Providence, Rhode Island 02912, USA 5Biodiversity Informatics Group, Marine Biological Laboratory, 7 MBL Street, Woods Hole, Massachusetts 02543, USA 6Current address: Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, Connecticut 06520, USA †These authors contributed equally *Corresponding author: L.A.K - [email protected] Phone: 413-585-3825, Fax: 413-585-3786 Keywords: Microbial eukaryotes, supergroups, taxon sampling, Rhizaria, systematic error, Excavata 2 An accurate reconstruction of the eukaryotic tree of life is essential to identify the innovations underlying the diversity of microbial and macroscopic (e.g. plants and animals) eukaryotes. Previous work has divided eukaryotic diversity into a small number of high-level ‘supergroups’, many of which receive strong support in phylogenomic analyses. However, the abundance of data in phylogenomic analyses can lead to highly supported but incorrect relationships due to systematic phylogenetic error. Further, the paucity of major eukaryotic lineages (19 or fewer) included in these genomic studies may exaggerate systematic error and reduces power to evaluate hypotheses. -
Cell Lysis of a Phagotrophic Dinoflagellate, Polykrikos Kofoidii Feeding on Alexandrium Tamarense
Plankton Biol. Ecol. 47 (2): 134-136,2000 plankton biology & ecology f The Plankton Society of Japan 2(100 Note Cell lysis of a phagotrophic dinoflagellate, Polykrikos kofoidii feeding on Alexandrium tamarense Hyun-Jin Cho1 & Kazumi Matsuoka2 'Graduate School of Marine Science and Engineering, Nagasaki University, 1-14 Bunkyo-inachi, Nagasaki 852-8521. Japan 2Laboratory of Coastal Environmental Sciences, Faculty of Fisheries. Nagasaki University. 1-14 Bunkyo-machi, Nagasaki 852-8521. Japan Received 9 December 1999; accepted 10 April 2000 In many cases, phytoplankton blooms terminate suddenly dinoflagellate, Alexandrium tamarense (Lebour) Balech. within a few days. For bloom-forming phytoplankton, grazing P. kofoidii was collected from Isahaya Bay in western is one of the major factors in the decline of blooms as is sexual Kyushu, Japan, on 3 November, 1998. We isolated actively reproduction to produce non-dividing gametes and planozy- swimming P. kofoidii using a capillary pipette and individually gotes (Anderson et al. 1983; Frost 1991). Matsuoka et al. transferred them into multi-well tissue culture plates contain (2000) reported growth rates of a phagotrophic dinoflagellate, ing a dense suspension of the autotrophic dinoflagellate, Polykrikos kofoidii Chatton, using several dinoflagellate Gymnodinium catenatum Graham (approximately 700 cells species as food organisms. They noted that P. kofoidii showed ml"1) isolated from a bloom near Amakusa Island, western various feeding and growth responses to strains of Alexan Japan, 1997. The P. kofoidii were cultured at 20°C with con drium and Prorocentrum. This fact suggests that for ecological stant lighting to a density of 60 indiv. ml"1, and then starved control of phytoplankton blooms, we should collect infor until no G. -
Sexual Reproduction and Bloom Dynamics of Toxic Dinoflagellates
SEXUAL REPRODUCTION AND BLOOM DYNAMICS OF TOXIC DINOFLAGELLATES FROM AUSTRALIAN ESTUARINE WATERS by Naomi S. Parker BSc., Grad. Dip. ASOS (Hons), MSc. Submitted in fulfillment of the requirements for the degree of Doctor of Philosophy School of Aquaculture University of Tasmania Hobart June,2002 DECLARATION AND AUTHORITY OF ACCESS This thesis contains no material which has been accepted for the award of a degree or a diploma in any university, and to the best of the author's knowledge and belief, the thesis contains no material previously published or written by another person, except where due acknowledgement is made in the text. This thesis may be made available for loan. Copying of any part of this thesis is prohibited for two years from the date this statement was signed; after that time limited copying is permitted in accordance with the Copyright Act 1968. Naomi S. Parker June 2002 ABSTRACT Of the dinoflagellates known to form toxic blooms in Australian estuaries three, Alexandrium minurum, Alexandrium catenella and Gymnodinium catenatum produce paralytic shellfish toxins that can lead to the potentially fatal paralytic shellfish poisoning in humans. These three species and a fourth dinoflagellate Protoceratium reticulatum all have the capacity to reproduce both by vegetative cell division and by sexual reproduction. The product of sexual reproduction in all cases is a resting cyst, which can sink to the sediments and remain dormant for a time. Resting cyst production results in a coupling between the benthic and pelagic components of estuarine systems and forms an important part of the ecological strategy of dinoflagellates. A variety of aspects of sexual reproduction of these four species were investigated. -
Ichthyotoxic Cochlodinium Polykrikoides Red Tides Offshore in the South Sea, Korea in 2014: II
Research Article Algae 2017, 32(3): 199-222 https://doi.org/10.4490/algae.2017.32.8.25 Open Access Ichthyotoxic Cochlodinium polykrikoides red tides offshore in the South Sea, Korea in 2014: II. Heterotrophic protists and their grazing impacts on red-tide organisms An Suk Lim1,2, Hae Jin Jeong1,3,*, Kyeong Ah Seong4, Moo Joon Lee1, Nam Seon Kang5, Se Hyeon Jang1, Kyung Ha Lee1, Jae Yeon Park3, Tae Young Jang1 and Yeong Du Yoo4 1School of Earth and Environmental Sciences, College of Natural Sciences, Seoul National University, Seoul 08826, Korea 2Brain Korea 21 Plus, School of Earth and Environmental Sciences, College of Natural Sciences, Seoul National University, Seoul 08826, Korea 3Advanced Institutes of Convergence Technology, Suwon 16229, Korea 4Department of Marine Biotechnology, Kunsan National University, Kunsan 54150, Korea 5Marine Biodiversity Institute of Korea, Seochun 33662, Korea Occurrence of Cochlodinium polykrikoides red tides have resulted in considerable economic losses in the aquaculture industry in many countries, and thus predicting the process of C. polykrikoides red tides is a critical step toward minimiz- ing those losses. Models predicting red tide dynamics define mortality due to predation as one of the most important parameters. To investigate the roles of heterotrophic protists in red tide dynamics in the South Sea of Korea, the abun- dances of heterotrophic dinoflagellates (HTDs), tintinnid ciliates (TCs), and naked ciliates (NCs) were measured over one- or two-week intervals from May to Nov 2014. In addition, the grazing impacts of dominant heterotrophic protists on each red tide species were estimated by combining field data on red tide species abundances and dominant heterotro- phic protist grazers with data obtained from the literature concerning ingestion rates of the grazers on red tide species. -
BMC Evolutionary Biology Biomed Central
BMC Evolutionary Biology BioMed Central Research article Open Access Molecular phylogeny of ocelloid-bearing dinoflagellates (Warnowiaceae) as inferred from SSU and LSU rDNA sequences Mona Hoppenrath*1,4, Tsvetan R Bachvaroff2, Sara M Handy3, Charles F Delwiche3 and Brian S Leander1 Address: 1Departments of Botany and Zoology, University of British Columbia, 6270 University Boulevard, Vancouver, BC, V6T 1Z4, Canada, 2Smithsonian Environmental Research Center, Edgewater, MD 21037-0028, USA, 3Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742-4407, USA and 4Current address : Forschungsinstitut Senckenberg, Deutsches Zentrum für Marine Biodiversitätsforschung (DZMB), Südstrand 44, D-26382 Wilhelmshaven, Germany Email: Mona Hoppenrath* - [email protected]; Tsvetan R Bachvaroff - [email protected]; Sara M Handy - [email protected]; Charles F Delwiche - [email protected]; Brian S Leander - [email protected] * Corresponding author Published: 25 May 2009 Received: 24 February 2009 Accepted: 25 May 2009 BMC Evolutionary Biology 2009, 9:116 doi:10.1186/1471-2148-9-116 This article is available from: http://www.biomedcentral.com/1471-2148/9/116 © 2009 Hoppenrath et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Dinoflagellates represent a major lineage of unicellular eukaryotes with unparalleled diversity and complexity in morphological features. The monophyly of dinoflagellates has been convincingly demonstrated, but the interrelationships among dinoflagellate lineages still remain largely unresolved. Warnowiid dinoflagellates are among the most remarkable eukaryotes known because of their possession of highly elaborate ultrastructural systems: pistons, nematocysts, and ocelloids. -
A New Heterotrophic Dinoflagellate from the North-Eastern Pacific
The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists Journal of Eukaryotic Microbiology ISSN 1066-5234 ORIGINAL ARTICLE A New Heterotrophic Dinoflagellate from the North-eastern Pacific, Protoperidinium fukuyoi: Cyst–Theca Relationship, Phylogeny, Distribution and Ecology Kenneth N. Mertensa, Aika Yamaguchib,c, Yoshihito Takanod, Vera Pospelovae, Martin J. Headf, Taoufik Radig, Anna J. Pienkowski h, Anne de Vernalg, Hisae Kawamid & Kazumi Matsuokad a Research Unit for Palaeontology, Ghent University, Krijgslaan 281 s8, 9000, Ghent, Belgium b Okinawa Institution of Science and Technology, 1919-1 Tancha, Onna-son, Kunigami, Okinawa, 904-0412, Japan c Kobe University Research Center for Inland Seas, Rokkodai, Kobe, 657-8501, Japan d Institute for East China Sea Research (ECSER), 1-14, Bunkyo-machi, Nagasaki, 852-8521, Japan e School of Earth and Ocean Sciences, University of Victoria, OEASB A405, P. O. Box 1700 STN CSC, Victoria, British Columbia, V8W 2Y2, Canada f Department of Earth Sciences, Brock University, 500 Glenridge Avenue, St. Catharines, Ontario, L2S 3A1, Canada g GEOTOP, UniversiteduQu ebec a Montreal, P. O. Box 8888, Montreal, Qubec, H3C 3P8, Canada h School of Ocean Sciences, College of Natural Sciences, Bangor University, Menai Bridge, Anglesey, LL59 5AB, United Kingdom Keywords ABSTRACT LSU rDNA; round spiny brown cyst; Saanich – Inlet; San Pedro Harbor; single-cell PCR; The cyst theca relationship of Protoperidinium fukuyoi n. sp. (Dinoflagellata, SSU rDNA; Strait of Georgia. Protoperidiniaceae) is established by incubating resting cysts from estuarine sediments off southern Vancouver Island, British Columbia, Canada, and San Correspondence Pedro Harbor, California, USA. The cysts have a brown-coloured wall, and are K.