Protozoologica Special Issue: Marine Heterotrophic Protists Guest Editors: John R
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
Suitability of Great South Bay, New York to Blooms of Pfiesteria Piscicida and P
City University of New York (CUNY) CUNY Academic Works School of Arts & Sciences Theses Hunter College Summer 8-10-2015 Suitability of Great South Bay, New York to Blooms of Pfiesteria piscicida and P. shumwayae Prior to Superstorm Sandy, October 29, 2012 Pawel Tomasz Zablocki CUNY Hunter College How does access to this work benefit ou?y Let us know! More information about this work at: https://academicworks.cuny.edu/hc_sas_etds/6 Discover additional works at: https://academicworks.cuny.edu This work is made publicly available by the City University of New York (CUNY). Contact: [email protected] Suitability of Great South Bay, New York, to Blooms of Pfiesteria piscicida and P. shumwayae Prior to Superstorm Sandy, October 29, 2012. By Pawel Zablocki Submitted in partial fulfillment of the requirements for the degree of Master of Arts Hunter College of the City of New York 2015 Thesis sponsor: __25 July 2015 Peter X. Marcotullio Date First Reader _2 August 2015 Karl H. Szekielda Date Second Reader i Acknowledgements I would like to thank my advisor, Professor H. Gong and two of my excellent readers—Professor Peter Marcotullio and Professor Karl Szekielda who provided their invaluable advice, alleviated my concerns, and weathered the avalanche of my questions. ii Abstract of the Thesis Pfiesteria piscicida and P. shumwayae are toxic dinoflagellates implicated in massive fish kills in North Carolina and Maryland during 1990s. A set of physical, chemical, and biological factors influence population dynamics of these organisms. This study employs information gathered from relevant literature on temperature, salinity, dissolved oxygen, pH, turbulent mixing, and dissolved nutrients, bacteria, algae, microzooplankton, mesozooplankton, bivalve mollusks, finfish, and other toxic dinoflagellates, which influence Pfiesteria population dynamics. -
Transcriptome Analysis Reveals Nuclear-Encoded Proteins for The
Wisecaver and Hackett BMC Genomics 2010, 11:366 http://www.biomedcentral.com/1471-2164/11/366 RESEARCH ARTICLE Open Access TranscriptomeResearch article analysis reveals nuclear-encoded proteins for the maintenance of temporary plastids in the dinoflagellate Dinophysis acuminata Jennifer H Wisecaver and Jeremiah D Hackett* Abstract Background: Dinophysis is exceptional among dinoflagellates, possessing plastids derived from cryptophyte algae. Although Dinophysis can be maintained in pure culture for several months, the genus is mixotrophic and needs to feed either to acquire plastids (a process known as kleptoplastidy) or obtain growth factors necessary for plastid maintenance. Dinophysis does not feed directly on cryptophyte algae, but rather on a ciliate (Myrionecta rubra) that has consumed the cryptophytes and retained their plastids. Despite the apparent absence of cryptophyte nuclear genes required for plastid function, Dinophysis can retain cryptophyte plastids for months without feeding. Results: To determine if this dinoflagellate has nuclear-encoded genes for plastid function, we sequenced cDNA from Dinophysis acuminata, its ciliate prey M. rubra, and the cryptophyte source of the plastid Geminigera cryophila. We identified five proteins complete with plastid-targeting peptides encoded in the nuclear genome of D. acuminata that function in photosystem stabilization and metabolite transport. Phylogenetic analyses show that the genes are derived from multiple algal sources indicating some were acquired through horizontal gene transfer. Conclusions: These findings suggest that D. acuminata has some functional control of its plastid, and may be able to extend the useful life of the plastid by replacing damaged transporters and protecting components of the photosystem from stress. However, the dearth of plastid-related genes compared to other fully phototrophic algae suggests that D. -
High Abundance of Plagioselmis Cf. Prolonga in the Krka River Estuary (Eastern Adriatic Sea)
SCIENTIA MARINA 78(3) September 2014, 329-338, Barcelona (Spain) ISSN-L: 0214-8358 doi: http://dx.doi.org/10.3989/scimar.03998.28C Cryptophyte bloom in a Mediterranean estuary: High abundance of Plagioselmis cf. prolonga in the Krka River estuary (eastern Adriatic Sea) Luka Šupraha 1, 2, Sunčica Bosak 1, Zrinka Ljubešić 1, Hrvoje Mihanović 3, Goran Olujić 3, Iva Mikac 4, Damir Viličić 1 1 Department of Biology, Faculty of Science, University of Zagreb, Rooseveltov trg 6, 10000 Zagreb, Croatia. 2 Present address: Department of Earth Sciences, Paleobiology Programme, Uppsala University, Villavägen 16, SE-752 36 Uppsala, Sweden. E-mail: [email protected] 3 Hydrographic Institute of the Republic of Croatia, Zrinsko-Frankopanska 161, 21000 Split, Croatia. 4 Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia. Summary: During the June 2010 survey of phytoplankton and physicochemical parameters in the Krka River estuary (east- ern Adriatic Sea), a cryptophyte bloom was observed. High abundance of cryptophytes (maximum 7.9×106 cells l–1) and high concentrations of the class-specific biomarker pigment alloxanthine (maximum 2312 ng l–1) were detected in the surface layer and at the halocline in the lower reach of the estuary. Taxonomical analysis revealed that the blooming species was Plagioselmis cf. prolonga. Analysis of the environmental parameters in the estuary suggested that the bloom was supported by the slower river flow as well as the increased orthophosphate and ammonium concentrations. The first record of a crypto- phyte bloom in the Krka River estuary may indicate that large-scale changes are taking place in the phytoplankton commu- nity. -
Akashiwo Sanguinea
Ocean ORIGINAL ARTICLE and Coastal http://doi.org/10.1590/2675-2824069.20-004hmdja Research ISSN 2675-2824 Phytoplankton community in a tropical estuarine gradient after an exceptional harmful bloom of Akashiwo sanguinea (Dinophyceae) in the Todos os Santos Bay Helen Michelle de Jesus Affe1,2,* , Lorena Pedreira Conceição3,4 , Diogo Souza Bezerra Rocha5 , Luis Antônio de Oliveira Proença6 , José Marcos de Castro Nunes3,4 1 Universidade do Estado do Rio de Janeiro - Faculdade de Oceanografia (Bloco E - 900, Pavilhão João Lyra Filho, 4º andar, sala 4018, R. São Francisco Xavier, 524 - Maracanã - 20550-000 - Rio de Janeiro - RJ - Brazil) 2 Instituto Nacional de Pesquisas Espaciais/INPE - Rede Clima - Sub-rede Oceanos (Av. dos Astronautas, 1758. Jd. da Granja -12227-010 - São José dos Campos - SP - Brazil) 3 Universidade Estadual de Feira de Santana - Departamento de Ciências Biológicas - Programa de Pós-graduação em Botânica (Av. Transnordestina s/n - Novo Horizonte - 44036-900 - Feira de Santana - BA - Brazil) 4 Universidade Federal da Bahia - Instituto de Biologia - Laboratório de Algas Marinhas (Rua Barão de Jeremoabo, 668 - Campus de Ondina 40170-115 - Salvador - BA - Brazil) 5 Instituto Internacional para Sustentabilidade - (Estr. Dona Castorina, 124 - Jardim Botânico - 22460-320 - Rio de Janeiro - RJ - Brazil) 6 Instituto Federal de Santa Catarina (Av. Ver. Abrahão João Francisco, 3899 - Ressacada, Itajaí - 88307-303 - SC - Brazil) * Corresponding author: [email protected] ABSTRAct The objective of this study was to evaluate variations in the composition and abundance of the phytoplankton community after an exceptional harmful bloom of Akashiwo sanguinea that occurred in Todos os Santos Bay (BTS) in early March, 2007. -
The Planktonic Protist Interactome: Where Do We Stand After a Century of Research?
bioRxiv preprint doi: https://doi.org/10.1101/587352; this version posted May 2, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Bjorbækmo et al., 23.03.2019 – preprint copy - BioRxiv The planktonic protist interactome: where do we stand after a century of research? Marit F. Markussen Bjorbækmo1*, Andreas Evenstad1* and Line Lieblein Røsæg1*, Anders K. Krabberød1**, and Ramiro Logares2,1** 1 University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N- 0316 Oslo, Norway 2 Institut de Ciències del Mar (CSIC), Passeig Marítim de la Barceloneta, 37-49, ES-08003, Barcelona, Catalonia, Spain * The three authors contributed equally ** Corresponding authors: Ramiro Logares: Institute of Marine Sciences (ICM-CSIC), Passeig Marítim de la Barceloneta 37-49, 08003, Barcelona, Catalonia, Spain. Phone: 34-93-2309500; Fax: 34-93-2309555. [email protected] Anders K. Krabberød: University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N-0316 Oslo, Norway. Phone +47 22845986, Fax: +47 22854726. [email protected] Abstract Microbial interactions are crucial for Earth ecosystem function, yet our knowledge about them is limited and has so far mainly existed as scattered records. Here, we have surveyed the literature involving planktonic protist interactions and gathered the information in a manually curated Protist Interaction DAtabase (PIDA). In total, we have registered ~2,500 ecological interactions from ~500 publications, spanning the last 150 years. -
University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
Dinoflagelados (Dinophyta) De Los Órdenes Prorocentrales Y Dinophysiales Del Sistema Arrecifal Veracruzano, México
Symbol.dfont in 8/10 pts abcdefghijklmopqrstuvwxyz ABCDEFGHIJKLMNOPQRSTUVWXYZ Symbol.dfont in 10/12 pts abcdefghijklmopqrstuvwxyz ABCDEFGHIJKLMNOPQRSTUVWXYZ Symbol.dfont in 12/14 pts abcdefghijklmopqrstuvwxyz ABCDEFGHIJKLMNOPQRSTUVWXYZ Dinoflagelados (Dinophyta) de los órdenes Prorocentrales y Dinophysiales del Sistema Arrecifal Veracruzano, México Dulce Parra-Toriz1,3, María de Lourdes Araceli Ramírez-Rodríguez1 & David Uriel Hernández-Becerril2 1. Facultad de Biología, Universidad Veracruzana, Circuito Gonzalo Beltrán s/n, Zona Universitaria, Xalapa, Veracruz, 91090 México; [email protected] 2. Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México (UNAM). Apartado Postal 70-305, México D.F. 04510 México; [email protected] 3. Posgrado en Ciencias del Mar. Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México (UNAM). Apartado Postal 70-305, México D.F. 04510 México; [email protected] Recibido 12-III-2010. Corregido 24-VIII-2010. Aceptado 23-IX-2010. Abstract: Dinoflagellates (Dinophyta) of orders Dinophysiales and Prorocentrales of the Veracruz Reef System, Mexico. Dinoflagellates are a major taxonomic group in marine phytoplankton communities in terms of diversity and biomass. Some species are also important because they form blooms and/or produce toxins that may cause diverse problems. The composition of planktonic dinoflagellates of the orders Prorocentrales and Dinophysiales, in the Veracruz Reef System, were obtained during the period of October 2006 to January 2007. For this, samples were taken from the surface at 10 stations with net of 30µm mesh, and were analyzed by light and scanning electron microscopy. Each species was described and illustrated, measured and their dis- tribution and ecological data is also given. A total of nine species were found and identified, belonging to four genera: Dinophysis was represented by three species; Prorocentrum by three, Phalacroma by two, and only one species of Ornithocercus was detected. -
Dinophysis - a Planktonic Dinoflagellate Genus Which Can Act Both As a Prey and a Predator of a Ciliate
MARINE ECOLOGY PROGRESS SERIES Vol. 69: 201-204.1991 Published January 10 Mar. Ecol. Prog. Ser. NOTE Dinophysis - a planktonic dinoflagellate genus which can act both as a prey and a predator of a ciliate Per Juel Hansen Marine Biological Laboratory. University of Copenhagen. Strandpromenaden 5, DK-3000 Helsinger, Denmark ABSTRACT: Heterotrophic members of the marine plankton (Nunclon, Denmark) at low light (50 pE m-2 S-') on a dinoflagellate genus Dinophysis are specialized predators, rotating wheel at 18 + 1 "C. The feeding behaviour of whose food includes the prostomatid ciliate Tiarina fusus. This heterotrophic (colourless) Dinophysis and the nature of ciliate differs from most planktonic ciliates in its ability to ingest prey of its own size including autotrophic Dinophysis food items were studied microscopically. For enumera- spp. However, when trying to catch a heterotrophic Dinophy- tion of plankton, Lugol-fixed water samples (at least sis sp., the ciliate is trapped instead by the dinoflagellate and 50 ml) were allowed to settle, and counted using an emptied via a feeding tube (peduncle),which originates from inverted microscope. For transmission electron micros- the flagellar pore of the dinoflagellate. The specific predation on a ciliate by a heterotrophic dinoflagellate represents a new copy, cells were fixed in a 0.1 M phosphate buffer (pH trophic link in the marine planktonic food web. 7.5) with l % Os04, 3 % glutaraldehyde and l mM sucrose. The fixed cells were stained in a saturated The existence of colourl.ess thecate dinoflagellates in solution of uranyl acetate in 70 % ethanol for 1 h, the marine pelagial has been recognized among taxo- dehydrated and imbedded in Epon. -
Development of Molecular Probes for Dinophysis (Dinophyceae) Plastid: a Tool to Predict Blooming and Explore Plastid Origin
Development of Molecular Probes for Dinophysis (Dinophyceae) Plastid: A Tool to Predict Blooming and Explore Plastid Origin Yoshiaki Takahashi,1 Kiyotaka Takishita,2 Kazuhiko Koike,1 Tadashi Maruyama,2 Takeshi Nakayama,3 Atsushi Kobiyama,1 Takehiko Ogata1 1School of Fisheries Sciences, Kitasato University, Sanriku, Ofunato, Iwate, 022-01011, Japan 2Marine Biotechnology Institute, Heita Kamaishi, Iwate, 026-0001, Japan 3Institute of Biological Sciences, University of Tsukuba, Tennoh-dai, Tsukuba, Ibaraki, 305-8577, Japan Received: 9 July 2004 / Accepted: 19 August 2004 / Online publication: 24 March 2005 Abstract Introduction Dinophysis are species of dinoflagellates that cause Some phytoplankton species are known to produce diarrhetic shellfish poisoning. We have previously toxins that accumulate in plankton feeders. In par- reported that they probably acquire plastids from ticular, toxin accumulation in bivalves causes food cryptophytes in the environment, after which they poisoning in humans, and often leads to severe eco- bloom. Thus monitoring the intracellular plastid nomic damage to the shellfish industry. density in Dinophysis and the source cryptophytes Diarrhetic shellfish poisoning (DSP) is a gastro- occurring in the field should allow prediction of intestinal syndrome caused by phytoplankton tox- Dinophysis blooming. In this study the nucleotide ins, including okadaic acid, and several analogues of sequences of the plastid-encoded small subunit dinophysistoxin (Yasumoto et al., 1985). These tox- ribosomal RNA gene and rbcL (encoding the large ins are derived from several species of dinoflagellates subunit of RuBisCO) from Dinophysis spp. were belonging to the genus Dinophysis (Yasumoto et al, compared with those of cryptophytes, and genetic 1980; Lee et al., 1989). Despite extensive studies in probes specific for the Dinophysis plastid were de- the last 2 decades, little is known about the eco- signed. -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
1. Dinoflagellate Chemotaxis and Attraction to Fish Products…………………………………………………………
ABSTRACT CANCELLIERI, PAUL JOSEPH. Chemosensory Attraction of Pfiesteria spp. to Fish Secreta. (Under the direction of Dr. JoAnn M. Burkholder). Dinoflagellates represent a diverse group of both auxotrophic and heterotrophic protists. Most heterotrophic dinoflagellates are raptorial feeders that encounter prey using “temporal-gradient sensing” chemotaxis wherein cells move along a chemical gradient in a directed manner toward the highest concentration. Using short-term “memory” to determine the orientation of the gradient, dinoflagellates swim in a “run- and-tumble” pattern, alternating directed swimming with rapid changes in orientation. As the extracellular concentration of the attractant increases, a corresponding increase in the ratio of net-to-gross displacement results in overall movement toward the stimulus. The dinoflagellates Pfiesteria piscicida and P. shumwayae are heterotrophic estuarine species with complex life cycles that include amoeboid, flagellated, and cyst stages, that have been implicated as causative agents in numerous major fish kills in the southeastern United States These organisms show documented “ambush-predator” behavior toward live fish in culture, including rapid transformations among stages and directed swimming toward fish prey in a manner that suggests the presence of a strong signalling relationship between live fish and cells of Pfiesteria spp. Zoospores of the two species of Pfiesteria can be divided into three functional types: TOX-A designates actively toxic isolates fed on fish prey; TOX-B refers to temporarily non-toxic cultures that have recently (1 week to 6 months) been removed from fish prey (and fed alternative algal prey); and NON-IND refers to isolates without apparent ichthyotoxic ability (tested as unable to kill fish in the standardized fish bioassay process; or without access to fish for ca.