Diatoms As Indicators of Lake Trophic Status
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An Analysis of Primary and Secondary Production in Lake Kariba in a Changing Climate
AN ANALYSIS OF PRIMARY AND SECONDARY PRODUCTION IN LAKE KARIBA IN A CHANGING CLIMATE MZIME R. NDEBELE-MURISA A thesis submitted in partial fulfillment of the requirements for the degree of Doctor Philosophiae in the Department of Biodiversity and Conservation Biology, University of the Western Cape Supervisor: Prof. Charles Musil Co-Supervisor: Prof. Lincoln Raitt May 2011 An analysis of primary and secondary production in Lake Kariba in a changing climate Mzime Regina Ndebele-Murisa KEYWORDS Climate warming Limnology Primary production Phytoplankton Zooplankton Kapenta production Lake Kariba i Abstract Title: An analysis of primary and secondary production in Lake Kariba in a changing climate M.R. Ndebele-Murisa PhD, Biodiversity and Conservation Biology Department, University of the Western Cape Analysis of temperature, rainfall and evaporation records over a 44-year period spanning the years 1964 to 2008 indicates changes in the climate around Lake Kariba. Mean annual temperatures have increased by approximately 1.5oC, and pan evaporation rates by about 25%, with rainfall having declined by an average of 27.1 mm since 1964 at an average rate of 6.3 mm per decade. At the same time, lake water temperatures, evaporation rates, and water loss from the lake have increased, which have adversely affected lake water levels, nutrient and thermal dynamics. The most prominent influence of the changing climate on Lake Kariba has been a reduction in the lake water levels, averaging 9.5 m over the past two decades. These are associated with increased warming, reduced rainfall and diminished water and therefore nutrient inflow into the lake. The warmer climate has increased temperatures in the upper layers of lake water, the epilimnion, by an overall average of 1.9°C between 1965 and 2009. -
Water Resources Report
MMINNEAPOLISINNEAPOLIS PPARKARK && RRECREATIONECREATION BBOARDOARD 20122012 WWATERATER RRESOURCESESOURCES RREPORTEPORT Environmental Stewardship Water Resources Management www.minneapolisparks.org January 2015 2012 WATER RESOURCES REPORT Prepared by: Minneapolis Park & Recreation Board Environmental Stewardship 3800 Bryant Avenue South Minneapolis, MN 55409-1029 612.230.6400 www.minneapolisparks.org January 2015 Funding provided by: Minneapolis Park & Recreation Board City of Minneapolis Public Works Copyright © 2015 by the Minneapolis Park & Recreation Board Material may be quoted with attribution. TABLE OF CONTENTS Page Abbreviations ............................................................................................................................. i Executive Summary ............................................................................................................... iv 1. Monitoring Program Overview .............................................................................................. 1-1 2. Birch Pond .............................................................................................................................. 2-1 3. Brownie Lake ......................................................................................................................... 3-1 4. Lake Calhoun ......................................................................................................................... 4-1 5. Cedar Lake ............................................................................................................................ -
Top-Down Trophic Cascades in Three Meromictic Lakes Tanner J
Top-down Trophic Cascades in Three Meromictic Lakes Tanner J. Kraft, Caitlin T. Newman, Michael A. Smith, Bill J. Spohr Ecology 3807, Itasca Biological Station, University of Minnesota Abstract Projections of tropic cascades from a top-down model suggest that biotic characteristics of a lake can be predicted by the presence of planktivorous fish. From the same perspective, the presence of planktivorous fish can theoretically be predicted based off of the sampled biotic factors. Under such theory, the presence of planktivorous fish contributes to low zooplankton abundances, increased zooplankton predator-avoidance techniques, and subsequent growth increases of algae. Lakes without planktivorous fish would theoretically experience zooplankton population booms and subsequent decreased algae growth. These assumptions were used to describe the tropic interactions of Arco, Deming, and Josephine Lakes; three relatively similar meromictic lakes differing primarily from their absence or presence of planktivorous fish. Due to the presence of several other physical, chemical, and environmental factors that were not sampled, these assumptions did not adequately predict the relative abundances of zooplankton and algae in a lake based solely on the fish status. However, the theory did successfully predict the depth preferences of zooplankton based on the presence or absence of fish. Introduction Trophic cascades play a major role in the ecological composition of lakes. One trophic cascade model predicts that the presence or absence of piscivorous fishes will affect the presence of planktivorous fishes, zooplankton size and abundance, algal biomass, and 1 subsequent water clarity (Fig. 1) (Carpenter et al., 1987). The trophic nature of lakes also affects animal behavior, such as the distribution patterns of zooplankton as a predator avoidance technique (Loose and Dawidowicz, 1994). -
Town of Seneca
TOWN OF BRISTOL Inventory of Land Use and Land Cover Prepared for: Ontario County Water Resources Council 20 Ontario Street, 3rd Floor Canandaigua, New York 14424 and Town of Bristol 6740 County Road 32 Canandaigua, New York 14424 Prepared by: Dr. Bruce Gilman Department of Environmental Conservation and Horticulture Finger Lakes Community College 3325 Marvin Sands Drive Canandaigua, New York 14424-8395 2020 Cover image: Ground level view of a perched swamp white oak forest community (S1S2) surrounding a shrub swamp that was discovered and documented on Johnson Hill north of Dugway Road. This forest community type is rare statewide and extremely rare locally, and harbors a unique assemblage of uncommon plant species. (Image by the Bruce Gilman). Acknowledgments: For over a decade, the Ontario County Planning Department has supported a working partnership between local towns and the Department of Environmental Conservation and Horticulture at Finger Lakes Community College that involves field research, ground truthing and digital mapping of natural land cover and cultural land use patterns. Previous studies have been completed for the Canandaigua Lake watershed, the southern Honeoye Valley, the Honeoye Lake watershed, the complete Towns of Canandaigua, Gorham, Richmond and Victor, and the woodlots, wetlands and riparian corridors in the Towns of Seneca, Phelps and Geneva. This report summarizes the latest land use/land cover study conducted in the Town of Bristol. The final report would not have been completed without the vital assistance of Terry Saxby of the Ontario County Planning Department. He is gratefully thanked for his assistance with landowner information, his patience as the fieldwork was slowly completed, and his noteworthy help transcribing the field maps to geographic information system (GIS) shape files. -
Epilithic Diatom Community Shows a Higher Vulnerability of the River Sava to Pollution During the Winter
diversity Article Epilithic Diatom Community Shows a Higher Vulnerability of the River Sava to Pollution during the Winter Igor Zelnik * and Tjaša Sušin Department of Biology, Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, SI-1000 Ljubljana, Slovenia; [email protected] * Correspondence: [email protected]; Tel.: +386-1-320-3339 Received: 12 November 2020; Accepted: 4 December 2020; Published: 5 December 2020 Abstract: The aim of the research was to investigate the influence of environmental factors on the structure of epilithic diatom communities in the Sava River from the source to the state border 220 km downstream. The river had numerous human influences along its course, such as municipal and industrial wastewater, agriculture, hydroelectric power plants, etc. The main objective of the research was to find out the influence of human pressure on the structure of the epilithic diatom community under winter and summer conditions. Winter and summer samples were taken at nine sites. At each sampling site, a set of abiotic factors was measured and another set of environmental parameters was evaluated. The analyses showed that nitrogen and phosphorus concentrations increased downstream. We identified 118 different species of diatoms. The most common taxa were Achnanthidium minutissimum and A. pyrenaicum. Planktonic species Cyclotella meneghiniana was only found in the samples of the lower part of the Sava, which is unusual for the epilithic community. The composition of the epilithic diatom community was significantly influenced by conductivity and water temperature, pH and distance from the source. The similarity between diatom communities closer to the source of the river was higher than between communities from the lower part of the Sava River. -
Improved Reference Genome for Cyclotella Cryptica Ccmp332, a Model
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.19.103069; this version posted May 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. 1 IMPROVED REFERENCE GENOME FOR CYCLOTELLA CRYPTICA CCMP332, A MODEL FOR CELL WALL MORPHOGENESIS, SALINITY ADAPTATION, AND LIPID PRODUCTION IN DIATOMS (BACILLARIOPHYTA) Wade R. Roberts1, Kala M. Downey1, Elizabeth C. Ruck1, Jesse C. Traller2, and Andrew J. Alverson1 1University of Arkansas, Department of Biological Sciences, SCEN 601, Fayetteville, AR 72701 USA, Phone: +1 479 575 4886, FAX: +1 479 575 4010 2Global Algae Innovations, San Diego, CA 92159 USA, Phone: +1 760 822 8277 Data available from: NCBI BioProjects PRJNA628076 and PRJNA589195 bioRxiv preprint doi: https://doi.org/10.1101/2020.05.19.103069; this version posted May 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. 2 Running title: IMPROVED CYCLOTELLA CRYPTICA GENOME Key words: algal biofuels, horizontal gene transfer, lipids, nanopore, transposable elements Corresponding author: Wade R. Roberts, University of Arkansas, Department of Biological Sciences, SCEN 601, Fayetteville, AR 72701, USA, +1 479 575 4886, [email protected] bioRxiv preprint doi: https://doi.org/10.1101/2020.05.19.103069; this version posted May 19, 2020. -
The Evolution of Silicon Transporters in Diatoms1
CORE Metadata, citation and similar papers at core.ac.uk Provided by Woods Hole Open Access Server J. Phycol. 52, 716–731 (2016) © 2016 The Authors. Journal of Phycology published by Wiley Periodicals, Inc. on behalf of Phycological Society of America. This is an open access article under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made. DOI: 10.1111/jpy.12441 THE EVOLUTION OF SILICON TRANSPORTERS IN DIATOMS1 Colleen A. Durkin3 Moss Landing Marine Laboratories, 8272 Moss Landing Road, Moss Landing California 95039, USA Julie A. Koester Department of Biology and Marine Biology, University of North Carolina Wilmington, Wilmington North Carolina 28403, USA Sara J. Bender2 Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole Massachusetts 02543, USA and E. Virginia Armbrust School of Oceanography, University of Washington, Seattle Washington 98195, USA Diatoms are highly productive single-celled algae perhaps their dominant ability to take up silicic acid that form an intricately patterned silica cell wall after from seawater in diverse environmental conditions. every cell division. They take up and utilize silicic Key index words: diatoms; gene family; molecular acid from seawater via silicon transporter (SIT) evolution; nutrients; silicon; transporter proteins. This study examined the evolution of the SIT gene family -
A New Freshwater Diatom Genus, &Lt
1 A new freshwater diatom genus, Theriotia gen. nov. of the Stephanodiscaceae (Bacillariophyta) from south-central China. J.P. Kociolek1,2,3* Q.-M. You1,4, J.G.Stepanek1,2, R.L. Lowe3,5 & Q.-X. Wang4 1Museum of Natural History, University of Colorado, Boulder, CO 80309, 2Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309, 3University of Michigan Biological Station, Pellston, MI, USA, 4 College of Life and Environmental Sciences, Shanghai Normal University, Shanghai, China, 5Department of Biological Sciences, Bowling Green State University, Bowling Green, OH, USA *To whom correspondence should be addressed. Email: [email protected] Communicating Editor: Received ; accepted Running title: New genus of Stephanodiscaceae This is the author manuscript accepted for publication and has undergone full peer review but has not been through the copyediting, typesetting, pagination and proofreading process, which may lead to differences between this version and the Version of Record. Please cite this article as doi: 10.1111/pre.12145 This article is protected by copyright. All rights reserved. 2 SUMMARY We describe a new genus and species of the diatom family Stephanodiscaceae with light and scanning electron microscopy from Libo Small Hole, Libo County, Guizhou Province, China. Theriotia guizhoiana gen. & sp. nov. has striae across the valve face of varying lengths, and are composed of fine striae towards the margin and onto the mantle. Many round to stellate siliceous nodules cover the exterior of the valve. External fultoportulae opening are short tubes; the opening of the rimportula lacks a tube. Internally a hyaline rim is positioned near the margin. -
Full-Length Transcriptome of Thalassiosira Weissflogii As
marine drugs Communication Full-Length Transcriptome of Thalassiosira weissflogii as a Reference Resource and Mining of Chitin-Related Genes Haomiao Cheng 1,2,3, Chris Bowler 4, Xiaohui Xing 5,6,7, Vincent Bulone 5,6,7, Zhanru Shao 1,2,* and Delin Duan 1,2,8,* 1 CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; [email protected] 2 Laboratory for Marine Biology and Biotechnology, Pilot Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China 3 University of Chinese Academy of Sciences, Beijing 100049, China 4 Institut de Biologie de l’ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, INSERM, Université PSL, 75005 Paris, France; [email protected] 5 Division of Glycoscience, Department of Chemistry, School of Engineering Sciences in Chemistry, Biotechnology and Health, Royal Institute of Technology (KTH), AlbaNova University Centre, 10691 Stockholm, Sweden; [email protected] (X.X.); [email protected] (V.B.) 6 Australian Research Council Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae 5064, Australia 7 Adelaide Glycomics, School of Agriculture Food and Wine, University of Adelaide, Waite Campus, Urrbrae 5064, Australia 8 State Key Laboratory of Bioactive Seaweed Substances, Qingdao Bright Moon Seaweed Group Co., Ltd., Qingdao 266400, China * Correspondence: [email protected] (Z.S.); [email protected] (D.D.) Citation: Cheng, H.; Bowler, C.; Xing, X.; Bulone, V.; Shao, Z.; Duan, D. Abstract: β-Chitin produced by diatoms is expected to have significant economic and ecological Full-Length Transcriptome of value due to its structure, which consists of parallel chains of chitin, its properties and the high Thalassiosira weissflogii as a Reference abundance of diatoms. -
The Model Marine Diatom Thalassiosira Pseudonana Likely
Alverson et al. BMC Evolutionary Biology 2011, 11:125 http://www.biomedcentral.com/1471-2148/11/125 RESEARCHARTICLE Open Access The model marine diatom Thalassiosira pseudonana likely descended from a freshwater ancestor in the genus Cyclotella Andrew J Alverson1*, Bánk Beszteri2, Matthew L Julius3 and Edward C Theriot4 Abstract Background: Publication of the first diatom genome, that of Thalassiosira pseudonana, established it as a model species for experimental and genomic studies of diatoms. Virtually every ensuing study has treated T. pseudonana as a marine diatom, with genomic and experimental data valued for their insights into the ecology and evolution of diatoms in the world’s oceans. Results: The natural distribution of T. pseudonana spans both marine and fresh waters, and phylogenetic analyses of morphological and molecular datasets show that, 1) T. pseudonana marks an early divergence in a major freshwater radiation by diatoms, and 2) as a species, T. pseudonana is likely ancestrally freshwater. Marine strains therefore represent recent recolonizations of higher salinity habitats. In addition, the combination of a relatively nondescript form and a convoluted taxonomic history has introduced some confusion about the identity of T. pseudonana and, by extension, its phylogeny and ecology. We resolve these issues and use phylogenetic criteria to show that T. pseudonana is more appropriately classified by its original name, Cyclotella nana. Cyclotella contains a mix of marine and freshwater species and so more accurately conveys the complexities of the phylogenetic and natural histories of T. pseudonana. Conclusions: The multitude of physical barriers that likely must be overcome for diatoms to successfully colonize freshwaters suggests that the physiological traits of T. -
Bacillariophyta) from South-Central China
Phycological Research 2016; 64: 274–280 doi: 10.1111/pre.12145 ........................................................................................................................................................................................... New freshwater diatom genus, Edtheriotia gen. nov. of the Stephanodiscaceae (Bacillariophyta) from south-central China John P. Kociolek,1,2,3* Qingmiin You,1,4 Joshua G. Stepanek,1,2 Rex L. Lowe3,5 and Quanxi Wang4 1Museum of Natural History and 2Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, Colorado, 3University of Michigan Biological Station, Pellston, Michigan, 5Department of Biological Sciences, Bowling Green State University, Bowling Green, Ohio, USA and 4College of Life and Environmental Sciences, Shanghai Normal University, Shanghai, China ........................................................................................ the flora of Europe and North America (see lists of genera fl SUMMARY reported in the freshwater diatom ora of China, Chin 1951; Qi 1995). Early attempts to describe new genera of freshwater We describe a new genus and species of the diatom family diatoms from China have proven difficult to verify (Porosularia Stephanodiscaceae with light and scanning electron micros- of Skvortzow 1976) or to be teratologies of previously-known copy from Libo Small Hole, Libo County, Guizhou Province, genera (Amphiraphia Chen & Zhu 1983, representing initial China. Edtheriotia guizhoiana gen. & sp. nov. has striae across valves of Caloneis; see Mann 1989). More recently, descrip- the valve face of varying lengths, and are composed of fine striae towards the margin and onto the mantle. Many round to tions of endemic species from freshwater environments of stellate siliceous nodules cover the exterior of the valve. Exter- China have grown dramatically (e.g. Li et al. 2009; Liu et al. nal fultoportulae opening are short tubes; the opening of the 1990, 2007, 2015; You et al. -
Identification, Characterization and Evolution of the Mating Type Locus in Diatoms
Department of Biology Department of Plant Biotechnology and Bioinformatics Department of Plant Systems Biology Identification, characterization and evolution of the mating type locus in diatoms Ives Vanstechelman Promotors: Prof. Dr. Koen Sabbe and Prof. Dr. ir. Marnik Vuylsteke Thesis submitted in fulfillment of the requirements for the degree of Doctor (PhD) in Sciences (Biology) Academic year 2012-2013 Exam commission Promotors: Prof. Dr. Koen Sabbe Prof. Dr. ir. Marnik Vuylsteke Members of the reading commission Dr. Mariella Ferrante Prof. Dr. Olivier De Clerck Prof. Dr. Wout Boerjan Other members of the exam commission Prof. Dr. Wim Vyverman Prof. Dr. Mieke Verbeken Dr. Marie Huysman Copyright © Ives Vanstechelman, Department of Biology, Faculty of Sciences, Ghent University, 2013. All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording, or otherwise, without permission in writing from the copyright holder(s). Acknowledgements The work presented in this thesis could not be successful without the help of several people. Therefore, I want to give a few words of thanks and appreciation for the people who supported me during this 4 years during PhD. First of all, I would like to thank my two promotors Koen Sabbe and Marnik Vuylsteke. Koen is my promotor with the biological background. He supported me a lot in giving more knowledge about the biology of diatoms and evolution. When I first met him, he could directly convince me to start in this position. The unique features of the diatom life cycle attracted me and I really saw it as a big challenge to get insight into the genetic basis of this.