T-Brain Regulates Archenteron Induction Signal 5207 Range of Amplification
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Legends for Supplemental Figures and Tables Figure S1. Expression of Tlx during retinogenesis. (A) Staged embryos were stained for β- galactosidase knocked into the Tlx locus to indicate Tlx expression. Tlx was expressed in the neural blast layer in the early phase of neural retina development (blue signal). (B) Expression of Tlx in neural retina was quantified using Q-PCR at multiple developmental stages. Figure S2. Expression of p27kip1 and cyclin D1 (Ccnd1) at various developmental stages in wild-type or Tlx-/- retinas. (A) Q-PCR analysis of p27kip1 mRNA expression. (B) Western blotting analysis of p27kip1 protein expression. (C) Q-PCR analysis of cyclin D1 mRNA expression. Figure S3. Q-PCR analysis of mRNA expression of Sf1 (A), Lrh1 (B), and Atn1 (C) in wild-type mouse retinas. RNAs from testis and liver were used as controls. Table S1. List of genes dysregulated both at E15.5 and P0 Tlx-/- retinas. Gene E15.5 P0 Cluste Gene Title Fold Fold r Name p-value p-value Change Change nuclear receptor subfamily 0, group B, Nr0b1 1.65 0.0024 2.99 0.0035 member 1 1 Pou4f3 1.91 0.0162 2.39 0.0031 POU domain, class 4, transcription factor 3 1 Tcfap2d 2.18 0.0000 2.37 0.0001 transcription factor AP-2, delta 1 Zic5 1.66 0.0002 2.02 0.0218 zinc finger protein of the cerebellum 5 1 Zfpm1 1.85 0.0030 1.88 0.0025 zinc finger protein, multitype 1 1 Pten 1.60 0.0155 1.82 0.0131 phospatase and tensin homolog 2 Itgb5 -1.85 0.0063 -1.85 0.0007 integrin beta 5 2 Gpr49 6.86 0.0001 15.16 0.0001 G protein-coupled receptor 49 3 Cmkor1 2.60 0.0007 2.72 0.0013 -
Divergence of Ectodermal and Mesodermal Gene Regulatory Network Linkages in Early Development of Sea Urchins
Divergence of ectodermal and mesodermal gene regulatory network linkages in early development of sea urchins Eric M. Erkenbracka,1,2 aDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125 Edited by Neil H. Shubin, The University of Chicago, Chicago, IL, and approved October 5, 2016 (received for review August 3, 2016) Developmental gene regulatory networks (GRNs) are assemblages of to study in sea urchins, whose lineages have undergone multiple gene regulatory interactions that direct ontogeny of animal body changes in life history strategies (8). Importantly, an excellent fossil plans. Studies of GRNs operating in the early development of record affords dating of evolutionary events (9), which has established euechinoid sea urchins have revealed that little appreciable change has that the sister subclasses of sea urchins—cidaroids and euechinoids— occurred since their divergence ∼90 million years ago (mya). These diverged at least 268 million years ago (mya) (10). Differences in observations suggest that strong conservation of GRN architecture the timing of developmental events in embryogenesis of cida- was maintained in early development of the sea urchin lineage. Test- roids and euechinoids have long been a topic of interest, but ing whether this holds for all sea urchins necessitates comparative have become the subject of molecular research only recently analyses of echinoid taxa that diverged deeper in geological time. (11–18). Recent studies highlighted extensive divergence of skeletogenic me- Research on the early development of the euechinoid purple soderm specification in the sister clade of euechinoids, the cidaroids, sea urchin Strongylocentrotus purpuratus (Sp) has brought into suggesting that comparative analyses of cidaroid GRN architecture high resolution the players and molecular logic directing devel- may confer a greater understanding of the evolutionary dynamics of opmental GRNs that specify Sp’s early embryonic domains developmental GRNs. -
Animal Form & Function
Animals Animal Form & Function By far, most diversity of bauplane (body forms). And most variations within bauplane. Animals are Animated “ANIMAL” ≠ MAMMAL — Fascinating Behaviors Animal Cells • Eukaryotic • No cell wall No plastids No central vacuole • Multicellular: – extensive specialization & differentiation – unique cell-cell junctions Heyer 1 Animals Animals Blastulation & Gastrulation • Motile • Early embryonic development in animals 3 In most animals, cleavage results in the formation of a multicellular stage called a 1 The zygote of an animal • Highly differentiated blastula. The blastula of many animals is a undergoes a succession of mitotic tissues cell divisions called cleavage. hollow ball of cells. Blastocoel • Intercellular junctions Cleavage Cleavage – tissue-specific cadherins 6 The endoderm of the archenteron develops into Eight-cell stage Blastula Cross section Zygote • Extracellular protein the the animal’s of blastula fibers digestive tract. Blastocoel Endoderm – collagen 5 The blind pouch formed by gastrulation, called Ectoderm • Diploid life cycle the archenteron, opens to the outside Gastrula Gastrulation via the blastopore. Blastopore 4 Most animals also undergo gastrulation, a • Blastula/gastrula rearrangement of the embryo in which one end of the embryo folds inward, expands, and eventually fills the embryo blastocoel, producing layers of embryonic tissues: the Figure 32.2 ectoderm (outer layer) and the endoderm (inner layer). Primary embryonic germ layers Primary embryonic germ layers • Diploblastic: two germ -
Apoptosis in Amphibian Development
Advances in Bioscience and Biotechnology, 2012, 3, 669-678 ABB http://dx.doi.org/10.4236/abb.2012.326087 Published Online October 2012 (http://www.SciRP.org/journal/abb/) Apoptosis in amphibian development Jean-Marie Exbrayat, Elara N. Moudilou, Lucie Abrouk, Claire Brun Université de Lyon, UMRS 449, Biologie Générale, Université Catholique de Lyon, Reproduction et Développement Comparé, Ecole Pratique des Hautes Etudes, Lyon, France Email: [email protected] Received 13 August 2012; revised 20 September 2012; accepted 28 September 2012 ABSTRACT divide to give the first two blastomeres which continue to divide becoming a morula. An inner cavity, the blasto- Amphibians and more particularly X. laevis are mod- coel, appears in the mass cell of the embryo, becoming a els often used for studying apoptosis during embry- blastula. During this period of cleavage, the size and onic development. Using several methods, searchers shape of embryos do not vary. Before mid blastula tran- determined the localization of programmed cell sition (MBT), zygotic genes do not express excepted deaths (PCD). Several experimental methods also those encoding for proteins implicated in membrane have been used to understand the regulatory mecha- building. Maternal mRNAs previously accumulated in nisms of apoptosis, throughout development, contrib- the oocytes remain present in the cytoplasm of zygote uting to elucidate the general action of several genes and they are distributed into the cytoplasm of blas- and proteins. Apoptosis occurs very early, with a first tomeres during cleavage. These maternal mRNAs encode program under control of maternal genes expressed for proteins which will be implicated in expression of before MBT, in order to eliminate damaged cells be- zygotic genes. -
Accompanies CD8 T Cell Effector Function Global DNA Methylation
Global DNA Methylation Remodeling Accompanies CD8 T Cell Effector Function Christopher D. Scharer, Benjamin G. Barwick, Benjamin A. Youngblood, Rafi Ahmed and Jeremy M. Boss This information is current as of October 1, 2021. J Immunol 2013; 191:3419-3429; Prepublished online 16 August 2013; doi: 10.4049/jimmunol.1301395 http://www.jimmunol.org/content/191/6/3419 Downloaded from Supplementary http://www.jimmunol.org/content/suppl/2013/08/20/jimmunol.130139 Material 5.DC1 References This article cites 81 articles, 25 of which you can access for free at: http://www.jimmunol.org/content/191/6/3419.full#ref-list-1 http://www.jimmunol.org/ Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists by guest on October 1, 2021 • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2013 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology Global DNA Methylation Remodeling Accompanies CD8 T Cell Effector Function Christopher D. Scharer,* Benjamin G. Barwick,* Benjamin A. Youngblood,*,† Rafi Ahmed,*,† and Jeremy M. -
UNIVERSITY of CALIFORNIA RIVERSIDE Investigations Into The
UNIVERSITY OF CALIFORNIA RIVERSIDE Investigations into the Role of TAF1-mediated Phosphorylation in Gene Regulation A Dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Cell, Molecular and Developmental Biology by Brian James Gadd December 2012 Dissertation Committee: Dr. Xuan Liu, Chairperson Dr. Frank Sauer Dr. Frances M. Sladek Copyright by Brian James Gadd 2012 The Dissertation of Brian James Gadd is approved Committee Chairperson University of California, Riverside Acknowledgments I am thankful to Dr. Liu for her patience and support over the last eight years. I am deeply indebted to my committee members, Dr. Frank Sauer and Dr. Frances Sladek for the insightful comments on my research and this dissertation. Thanks goes out to CMDB, especially Dr. Bachant, Dr. Springer and Kathy Redd for their support. Thanks to all the members of the Liu lab both past and present. A very special thanks to the members of the Sauer lab, including Silvia, Stephane, David, Matt, Stephen, Ninuo, Toby, Josh, Alice, Alex and Flora. You have made all the years here fly by and made them so enjoyable. From the Sladek lab I want to thank Eugene, John, Linh and Karthi. Special thanks go out to all the friends I’ve made over the years here. Chris, Amber, Stephane and David, thank you so much for feeding me, encouraging me and keeping me sane. Thanks to the brothers for all your encouragement and prayers. To any I haven’t mentioned by name, I promise I haven’t forgotten all you’ve done for me during my graduate years. -
Archenteron Precursor Cells Can Organize Secondary Axial Structures in the Sea Urchin Embryo
Development 124, 3461-3470 (1997) 3461 Printed in Great Britain © The Company of Biologists Limited 1997 DEV3652 Archenteron precursor cells can organize secondary axial structures in the sea urchin embryo Hélène Benink1, Gregory Wray2 and Jeff Hardin1,3,* 1Department of Zoology and 3Program in Cell and Molecular Biology, University of Wisconsin, Madison, 1117 West Johnson Street, Madison, WI 53706, USA 2Department of Ecology and Evolution, SUNY, Stony Brook, NY 11794, USA *Author for correspondence: (e-mail: [email protected]) SUMMARY Local cell-cell signals play a crucial role in establishing terning sites within the ectoderm. The ectopic skeletal major tissue territories in early embryos. The sea urchin elements are bilaterally symmetric, and flank the ectopic embryo is a useful model system for studying these inter- archenteron, in some cases resulting in mirror-image, actions in deuterostomes. Previous studies showed that symmetric skeletal elements. Since the induced patterned ectopically implanted micromeres from the 16-cell embryo ectoderm and supernumerary skeletal elements are derived can induce ectopic guts and additional skeletal elements in from the host, the ectopic presumptive archenteron tissue sea urchin embryos. Using a chimeric embryo approach, we can act to ‘organize’ ectopic axial structures in the sea show that implanted archenteron precursors differentiate urchin embryo. autonomously to produce a correctly proportioned and patterned gut. In addition, the ectopically implanted pre- sumptive archenteron tissue induces ectopic skeletal pat- Key words: induction, gastrulation, sea urchin, endoderm INTRODUCTION mapping studies have shown that veg1 descendants contribute tissue to the vegetal regions of the archenteron by the late Progressive refinement of the embryonic body plan via local gastrula stage (Logan and McClay, 1997); by this time veg1 inductive interactions is a common theme among animal and veg2 descendants intermingle within the wall of the archen- embryos. -
Regulative Capacity of the Archenteron During Gastrulation in the Sea Urchin
Development 122, 607-616 (1996) 607 Printed in Great Britain © The Company of Biologists Limited 1996 DEV3313 Regulative capacity of the archenteron during gastrulation in the sea urchin David R. McClay* and Catriona Y. Logan Developmental, Cellular and Molecular Biology Group, LSRC, Duke University, Durham NC 27708, USA *Author for correspondence (e-mail: [email protected]) SUMMARY Gastrulation in the sea urchin involves an extensive ognizable morphology of the archenteron was re-estab- rearrangement of cells of the archenteron giving rise to lished. Long after the archenteron reveals territorial speci- secondary mesenchyme at the archenteron tip followed by fication through expression of specific markers, the endo- the foregut, midgut and hindgut. To examine the regula- dermal cells remain capable of being respecified to other tive capacity of this structure, pieces of the archenteron gut regions. Thus, for much of gastrulation, the gut is con- were removed or transplanted at different stages of gas- ditionally specified. We propose that this regulative ability trulation. After removal of any or all parts of the archen- requires extensive and continuous short-range communi- teron, the remaining veg 1 and/or veg 2 tissue regulated to cation between cells of the archenteron in order to reor- replace the missing parts. Endoderm transplanted to ganize the tissues and position the boundaries of this ectopic positions also regulated to that new position in the structure even after experimental alterations. archenteron. This ability to replace or regulate endoderm did not decline until after full elongation of the archenteron was completed. When replacement occurred, the new gut Key words: morphogenesis, cell lineage, cell fate, differentiation, was smaller relative to the remaining embryo but the rec- specification. -
Apoptotic Cells Inflammasome Activity During the Uptake of Macrophage
Downloaded from http://www.jimmunol.org/ by guest on September 29, 2021 is online at: average * The Journal of Immunology , 26 of which you can access for free at: 2012; 188:5682-5693; Prepublished online 20 from submission to initial decision 4 weeks from acceptance to publication April 2012; doi: 10.4049/jimmunol.1103760 http://www.jimmunol.org/content/188/11/5682 Complement Protein C1q Directs Macrophage Polarization and Limits Inflammasome Activity during the Uptake of Apoptotic Cells Marie E. Benoit, Elizabeth V. Clarke, Pedro Morgado, Deborah A. Fraser and Andrea J. Tenner J Immunol cites 56 articles Submit online. Every submission reviewed by practicing scientists ? is published twice each month by Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts http://jimmunol.org/subscription http://www.jimmunol.org/content/suppl/2012/04/20/jimmunol.110376 0.DC1 This article http://www.jimmunol.org/content/188/11/5682.full#ref-list-1 Information about subscribing to The JI No Triage! Fast Publication! Rapid Reviews! 30 days* Why • • • Material References Permissions Email Alerts Subscription Supplementary The Journal of Immunology The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2012 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. This information is current as of September 29, 2021. The Journal of Immunology Complement Protein C1q Directs Macrophage Polarization and Limits Inflammasome Activity during the Uptake of Apoptotic Cells Marie E. -
Chapter 4 Sea Urchin Development Carolyn M
Chapter 4 Sea Urchin Development Carolyn M. Conway Don Igelsrud Department of Biology Department of Biology Virginia Commonwealth University The University of Calgary Richmond, Virginia 23284 USA Calgary, Alberta T2N 1N4 Canada Arthur F. Conway Department of Biology Randolph-Macon College Ashland, Virginia 23005 USA Carolyn M. Conway is currently an Assistant Professor of Biology at Virginia Com- monwealth University where she teaches Animal Embryology, Devetopmental Biology, and Teratology. She received her BS and MA degrees at Longwood College and the College of William and Mary respectively. She received her PhD from the University of Miami where her research involved an ultrastructural study of sea urchin eggs. While completing her doctorate she spent several Summers at the Marine Biological Labo- ratory as a participant in the Fertilization and Gamete Physiology Training Program. Prior to joining the VCU faculty she taught at Iowa State University and Hobart and William Smith Colleges. Her current research involves the relationship between ma- ternal autoimmune disease and birth defects. Don Igelsrud is currently an Instructor of Biology at The University of Calgary where he is in charge of the introductory zoology laboratories. He received his BS degree from the University of Kansas and his MA degree from Washington University. Prior to joining the faculty at The University of Calgary he taught at Delaware Valley College where he developed a sfrong interest in laboratory teaching, and at Northwestern Uni- versity where he was Biology Laboratory Director. His main interests are in increasing awareness and understanding of living phenomena and in finding living organisms that survive well in the laboratory with a minimum of maintenance. -
Dynamics of Thin Filopodia During Sea Urchin Gastrulation
Development 121, 2501-2511 (1995) 2501 Printed in Great Britain © The Company of Biologists Limited 1995 Dynamics of thin filopodia during sea urchin gastrulation Jeffrey Miller1, Scott E. Fraser2 and David McClay1,* 1Developmental, Cell and Molecular Biology, Duke University, SRC, Box 91000, Durham, NC 27708, USA 2Division of Biology, Beckman Institute (139-74), California Institute of Technology, Pasadena CA 91125, USA *Author for correspondence: e-mail [email protected] SUMMARY At gastrulation in the sea urchin embryo, a dramatic involvement in cell-cell interactions associated with rearrangement of cells establishes the three germ layers of signaling and patterning at gastrulation. Nickel-treatment, the organism. Experiments have revealed a number of cell which is known to create a patterning defect in skeleto- interactions at this stage that transfer patterning informa- genesis due to alterations in the ectoderm, alters the normal tion from cell to cell. Of particular significance, primary position-dependent differences in the thin filopodia. The mesenchyme cells, which are responsible for production of effect is present in recombinant embryos in which the the embryonic skeleton, have been shown to obtain ectoderm alone was treated with nickel, and is absent in extensive positional information from the embryonic recombinant embryos in which only the primary mes- ectoderm. In the present study, high resolution Nomarski enchyme cells were treated, suggesting that the filopodial imaging reveals the presence of very thin filopodia (0.2-0.4 length is substratum dependent rather than being primary µm in diameter) extending from primary mesenchyme cells mesenchyme cell autonomous. The thin filopodia provide a as well as from ectodermal and secondary mesenchyme means by which cells can contact others several cell cells. -
2. Archenteron Morphogenesis in the Sea Urchin David R
Cell-Cell Interactions in Early Development, pages 15-29 © 1991 Wiley-Liss, Inc. I .f 2. Archenteron Morphogenesis in the Sea Urchin David R. McClay, John Morrill, and Jeff Hardin Department of Zoology, Duke University, Durham, North Carolina 27707 (D .R.M., J.H.); Department of Biology, New College, Sarasota, Florida 33580 (J .M.) INTRODUCTION The progression of development involves an impressive array of morphoge netic rearrangements, each of which involves the coordination of multiple cel lular functions and molecular events. We have been studying gastrulation in the sea urchin embryo as a relatively simple model system in an attempt to understand the sorts of rules observed by an embryo as it performs a single morphogenetic event. To the observer, gastrulation in this embryo involves two major cell movements. First, primary mesenchyme cells ingress and dis playa series of migratory behaviors leading to the assembly of the larval skel eton. Second, invagination of the archenteron leads to the formation of the primitive gut. The ingression and subsequent behavior of primary mesenchyme cells is examined elsewhere in this volume (Ettensohn, Chapter 11). Here we review events associated with formation of the archenteron . In echinoderm embryos, archenteron formation begins with an indentation of the vegetal plate, followed by elongation of the indented area until a tubular archenteron forms that extends into the blastocoel . Elongation continues until the tube reaches a defined, anatomically specific region on the wall of the blastocoel (Fig . I). All through invagination, secondary mesenchyme cells at the tip of the archenteron extend filopodia that make contact with the wall of the blastocoel.