MUMM Winmon Report 2012
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The National Marine Biological Analytical Quality Control Scheme
The National Marine Biological Analytical Quality Control Scheme Macrobenthic Exercise Results – MB19 Jessica Taylor & David Hall [email protected] June 2012 Thomson Unicomarine Ltd. 7 Diamond Centre Works Road Letchworth Hertfordshire SG6 1LW www.unicomarine.com EXERCISE DETAILS Macrobenthos #19 Type/Contents – Natural marine sample from southern North Sea; approx. 0.5 litres of shell debris; 1 mm sieve mesh processing. Circulated – 05/09/2011 Completion Date – 02/12/2011 Number of Participating Laboratories – 9 Number of Results Received – 7 ______________________________________________________________________________ Contents Results Sheets 1 - 7. NMBAQC Scheme Interim Results – Macrobenthic exercise (MB19). Tables Table 1. Results from the analysis of Macrobenthic sample MB19 by the participating laboratories. Table 2. Comparison of the efficiency of extraction of fauna by the participating laboratories for the major taxonomic groups present in sample MB19. Table 3. Comparison of the estimates of biomass made by the participating laboratories with those made by Thomson Unicomarine Ltd. for the major taxonomic groups present in sample MB19. Table 5. Variation in faunal content reported for the artificial replicate samples distributed as MB19. Figures Figure 1. MB19 data from participating laboratories (raw - untransformed). Cluster dendrogram showing plotted data from participating laboratories as supplied. Figure 2. MB19 data reanalysed by Thomson Unicomarine Ltd. Cluster dendrogram showing plotted data from participating laboratories following reanalysis by Thomson Unicomarine Ltd. (untransformed). All residues and fauna have been reanalysed. No data truncation – all faunal groups included. Appendices Appendix 1 MB19 Instructions for participation. NMBAQC Scheme Interim Results LabCode LB1802 Summary Data SampleCode MB19 Diff. In No. Taxa -6 Sample Received 16/01/2012 Diff. -
Tese De Doutoramento
UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL Contribution to the development of biotic integrity assessment tools for Portuguese estuaries based on benthic communities Paula Maria Chainho de Oliveira Doutoramento em Biologia Especialidade de Ecologia Aplicada 2008 UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL Contribution to the development of biotic integrity assessment tools for Portuguese estuaries based on benthic communities Paula Maria Chainho de Oliveira Tese orientada por: Professora Catedrática Maria José Costa Eminent Scholar Daniel M. Dauer Doutoramento em Biologia Especialidade de Ecologia Aplicada 2008 To my daughter Para a minha filha Acknowledgments ACKNOWLEDGMENTS/ AGRADECIMENTOS This thesis represents a very important period of my life and I could not have accomplished this challenge without the support of those who funded the work, advised me, helped me with many tasks and provided me encouragement and emotional reassurance to continue in difficult moments. Therefore, I would like to thank all those who contributed at different stages, especially: A realização desta tese representou um período muito importante da minha vida e não teria sido possível concretizar este desafio sem o apoio daqueles que financiaram a investigação, os que me orientaram, os que ajudaram em algumas tarefas e todos os que me apoiaram nos momentos mais difíceis. Assim, quero agradecer a todos os que contribuíram nas diferentes fases do processo, em especial: À Professora Maria José Costa, por ter aceite a orientação desta tese, por ter acreditado que seria capaz de concretizar este desafio até ao fim e por ter sido pragmática em todos os momentos em que tal foi necessário; Professor Daniel Dauer for being my “scientific father” along these six years. -
Benthic Ecology
East Anglia TWO Offshore Windfarm Chapter 9 Benthic Ecology Preliminary Environmental Information Volume 1 Document Reference: EA2-DEVWF-ENV-REP-IBR-000804 Prepared by: Checked by: Approved by: www.scottishpowerrenewables.com East Anglia TWO Offshore Windfarm Preliminary Environmental Information Report Revision Summary Rev Date Document status Prepared by Checked by Approved by 01 11/01/2019 For issue Paolo Pizzolla Julia Bolton Helen Walker Description of Revisions Rev Page Section Description 01 n/a n/a Final draft EA2-DEVWF-ENV-REP-IBR-000804-Chapter 9 Benthic Ecology Page i East Anglia TWO Offshore Windfarm Preliminary Environmental Information Report Table of Contents 9 Benthic Ecology 1 9.1 Introduction 1 9.2 Consultation 2 9.3 Scope 9 9.4 Assessment Methodology 34 9.5 Existing Environment 47 9.6 Potential Impacts 65 9.7 Cumulative Impacts 90 9.8 Transboundary Impacts 100 9.9 Interactions 101 9.10 Inter-relationships 105 9.11 Summary 106 9.12 References 112 EA2-DEVWF-ENV-REP-IBR-000804-Chapter 9 Benthic Ecology Page ii East Anglia TWO Offshore Windfarm Preliminary Environmental Information Report Chapter 9 Benthic Ecology figures are presented in Volume 2: Figures and listed in the table below. Figure number Title 9.1 Benthic Grab Sample Locations 9.2 Offshore Development Area in the Context of the Former East Anglia Zone 9.3 Sediment Distribution 9.4 Infaunal Abundance 9.5 Infaunal Diversity 9.6 Infaunal Biomass 9.7 Infaunal Groups 9.8 Epifaunal Abundance 9.9 Epifaunal Diversity 9.10 Epifaunal Groups 9.11 Sabellaria Abundance 9.12 Sabellaria Reef 9.13 Designated Sites Chapter 9 Benthic Ecology appendices are presented in Volume 3: Appendices and listed in the table below. -
Ring Test Bulletin – RTB#50
www.nmbaqcs.org Ring Test Bulletin – RTB#50 Carol Milner Tim Worsfold David Hall Chris Ashelby Søren Pears (Images) APEM Ltd. March 2016 E-mail: [email protected] NMBAQC RTB#50 RING TEST DETAILS Ring Test #50 Type/Contents – General Circulated – 14/10/15 Results deadline – 18/12/15 Final results received date – 5/1/16 Number of Subscribing Laboratories – 22 Number of Participating Laboratories – 20 Number of Results Received – 21* *multiple data entries per laboratory permitted Summary of differences Total differences for 21 Specimen Genus Species returns Genus Species RT5001 Ampelisca diadema 0 8 RT5002 Pseudoprotella phasma 1 1 RT5003 Gammaropsis maculata 5 5 RT5004 Socarnes erythrophthalmus 4 6 RT5005 Stenothoe marina 1 1 RT5006 Abludomelita obtusata 4 5 RT5007 Gammarus crinicornis 0 5 RT5008 Unciola crenatipalma 3 3 RT5009 Leptocheirus tricristatus 1 1 RT5010 Harpinia crenulata 2 2 RT5011 Parametaphoxus fultoni 2 2 RT5012 Melita hergensis 0 1 RT5013 Caprella mutica 0 13 RT5014 Corophium volutator 0 3 RT5015 Parajassa pelagica 3 3 RT5016 Stenothoe monoculoides 4 4 RT5017 Dexamine thea 4 10 RT5018 Dexamine thea 3 6 RT5019 Aora gracilis 0 4 RT5020 Crassicorophium crassicorne 2 3 RT5021 Talitrus saltator 5* 5* RT5022 Nototropis swammerdamei 0 1 RT5023 Gammarus tigrinus 1 14 RT5024 Gammarus finmarchicus 2 5 RT5025 Melita hergensis 0 4 Total differences 47 115 Average differences /lab. 2.2 5.5 *A mixture of Talitrus saltator and Deshayesorchestia deshayesii was sent out in error. Specimens have been checked prior to this report being issued and labs marked correct. Please see RT5021 below for details. -
Author's Personal Copy
Author's personal copy Journal of Sea Research 85 (2014) 508–517 Contents lists available at ScienceDirect Journal of Sea Research journal homepage: www.elsevier.com/locate/seares Dietary analysis of the marine Amphipoda (Crustacea: Peracarida) from the Iberian Peninsula J.M. Guerra-García a,b,⁎, J.M. Tierno de Figueroa b,c,C.Navarro-Barrancoa,b,M.Rosa,b, J.E. Sánchez-Moyano a,J.Moreirad a Departamento de Zoología, Facultad de Biología, Universidad de Sevilla, Avda Reina Mercedes 6, 41012 Sevilla, Spain b Jun Zoological Research Center, C/Los Jazmines 15, 18213 Jun, Granada, Spain c Departamento de Zoología, Facultad de Ciencias, Universidad de Granada, Campus Fuentenueva, 18071 Granada, Spain d Departamento de Zoología, Facultad de Ciencias, Universidad Autónoma de Madrid, C/Darwin 2, 28049 Madrid, Spain article info abstract Article history: The gut contents of 2982 specimens of 33 amphipod families, 71 genera and 149 species were examined, Received 30 March 2013 representing a high percentage of amphipod diversity in the Iberian Peninsula. Material was collected mainly Received in revised form 29 July 2013 from sediments, algae and hydroids along the whole coast of the Iberian Peninsula from 1989 to 2011. Although Accepted 10 August 2013 detritus was the dominant food item in the majority of amphipods, gammarideans also included carnivorous Available online 23 August 2013 (mainly feeding on crustaceans) and herbivorous species (feeding on macroalgal tissues). Our study revealed that general assignment of a type of diet for a whole family is not always adequate. Some families showed a con- Keywords: Feeding Habits sistent pattern in most of the studied species (Corophiidae, Pontoporeiidae =detritivorous; Oedicerotidae, Amphipods Phoxocephalidae, Stenothoidae = carnivorous; Ampithoidae = primarily herbivorous on macroalgae), but Caprellideans others included species with totally different feeding strategies. -
The Influence of Ocean Warming on the Provision of Biogenic Habitat by Kelp Species
University of Southampton Faculty of Natural and Environmental Sciences School of Ocean and Earth Sciences The influence of ocean warming on the provision of biogenic habitat by kelp species by Harry Andrew Teagle (BSc Hons, MRes) A thesis submitted in accordance with the requirements of the University of Southampton for the degree of Doctor of Philosophy April 2018 Primary Supervisor: Dr Dan A. Smale (Marine Biological Association of the UK) Secondary Supervisors: Professor Stephen J. Hawkins (Marine Biological Association of the UK, University of Southampton), Dr Pippa Moore (Aberystwyth University) i UNIVERSITY OF SOUTHAMPTON ABSTRACT FACULTY OF NATURAL AND ENVIRONMENTAL SCIENCES Ocean and Earth Sciences Doctor of Philosophy THE INFLUENCE OF OCEAN WARMING ON THE PROVISION OF BIOGENIC HABITAT BY KELP SPECIES by Harry Andrew Teagle Kelp forests represent some of the most productive and diverse habitats on Earth, and play a critical role in structuring nearshore temperate and subpolar environments. They have an important role in nutrient cycling, energy capture and transfer, and offer biogenic coastal defence. Kelps also provide extensive substrata for colonising organisms, ameliorate conditions for understorey assemblages, and generate three-dimensional habitat structure for a vast array of marine plants and animals, including a number of ecologically and commercially important species. This thesis aimed to describe the role of temperature on the functioning of kelp forests as biogenic habitat formers, predominantly via the substitution of cold water kelp species by warm water kelp species, or through the reduction in density of dominant habitat forming kelp due to predicted increases in seawater temperature. The work comprised three main components; (1) a broad scale study into the environmental drivers (including sea water temperature) of variability in holdfast assemblages of the dominant habitat forming kelp in the UK, Laminaria hyperborea, (2) a comparison of the warm water kelp Laminaria ochroleuca and the cold water kelp L. -
Bacterial Communities
A DNA (meta)barcoding approach to assess changes in seabed ecosystems related to human- induced pressures Devriese LisaA, De Backer AnneliesA, Maes SaraA, Van Hoey GertA, Haegeman AnneliesB, Ruttink TomB, Wittoeck JanA, Hillewaert HansA, De Tender CarolineA, Hostens KrisA A Institute for Agricultural and Fisheries Research (ILVO), Animal Sciences Unit, Aquatic environment and quality, Ankerstraat 1, 8400 Oostende, Belgium B Institute for Agricultural and Fisheries Research (ILVO), Plant Sciences Unit, Growth and Development, Caritasstraat 39, 9090 Melle, Belgium Contact: [email protected] I. Aim II. Methodology Macrobenthos communities Development of a DNA metabarcoding • Amplicon sequencing of the V4 fragment of the 18S rDNA using Illumina technology pipeline to assess marine benthic DNA extracts of individual species and artificial mixtures of various species biodiversity in the North Sea. • Sanger sequencing of 4 DNA barcode amplicons: COI (313-319 bp), COI (655-661 bp), V4 18S rDNA (370-582 bp), V7-V8 18S rDNA (281-592 bp) Evaluation of DNA metabarcoding to assess effects of sand extraction on Bacterial communities bacterial species composition in the • Amplicon sequencing of the V3-V4 fragment of the 16S rDNA using Illumina technology Belgian part of the North Sea. (De Tender et al., 2015) DNA extracts of sediment samples (Buiten Ratel sand bank) IV. Macrobenthos III. Macrobenthos Evaluation of the Sanger sequencing Amplicon sequencing, e.g. V4 18S rDNA effectiveness of the barcoding primers (V4 18S) on Taxonomic resolution Species identification OK individual species Failed sequencing of the barcoding Sequence not in public database Identification Genus level and artificial mix primers: Identified as other species * Failed PCR samples. -
Abludomelita Obtusata (Montagu, 1813)
Abludomelita obtusata (Montagu, 1813) AphiaID: 102788 ANFÍPODE Animalia (Reino) >Arthropoda (Filo) >Crustacea (Subfilo) >Multicrustacea (Superclasse) >Malacostraca (Classe) >Eumalacostraca (Subclasse) > Peracarida (Superordem) > Amphipoda (Ordem) > Senticaudata (Subordem) > Hadziida (Infraordem) > Hadziidira (Parvordem) > Hadzioidea (Superfamilia) > Melitidae (Familia) Hans Hillewaert Hans Hillewaert, via Wikimedia Commons Sinónimos Cancer (Gammarus) obtusatus Montagu, 1813 Cancer obtusatus Montagu, 1813 Melita obtusata (Montagu, 1813) Referências additional source Howson, C. M.; Picton, B. E. (1997). The species directory of the marine fauna and flora of the British Isles and surrounding seas. Ulster Museum Publication, 276. The Ulster Museum: Belfast, UK. ISBN 0-948150-06-8. vi, 508 (+ cd-rom) pp. [details] basis of record Bellan-Santini, D.; Costello, M.J. (2001). Amphipoda. in: Costello, M.J. et al. (Ed.) (2001). European register of marine species: a check-list of the marine species in Europe and a bibliography of guides to their identification. Collection Patrimoines Naturels 50: pp. 295-308. [details] additional source Bachelet, G.; Dauvin, J.-C.; Sorbe, J.C. (2003). An updated checklist of marine and brackish water Amphipoda (Crustacea: Peracarida) of the southern Bay of Biscay (NE Atlantic). Cah. 1 Biol. Mar. 44(2): 121-151 [details] additional source Muller, Y. (2004). Faune et flore du littoral du Nord, du Pas-de-Calais et de la Belgique: inventaire. [Coastal fauna and flora of the Nord, Pas-de-Calais and Belgium: inventory]. Commission Régionale de Biologie Région Nord Pas-de-Calais: France. 307 pp., available online at http://www.vliz.be/imisdocs/publications/145561.pdf [details] original description Montagu, George. (1813 [not 1815]). Descriptions of several new or rare animals, principally marine, discovered on the South coast of Devonshire. -
Appendix 22C - Sizewell Benthic Ecology Characterisation
The Sizewell C Project 6.3 Volume 2 Main Development Site Chapter 22 Marine Ecology and Fisheries Appendix 22C - Sizewell Benthic Ecology Characterisation Revision: 1.0 Applicable Regulation: Regulation 5(2)(a) PINS Reference Number: EN010012 May 2020 Planning Act 2008 Infrastructure Planning (Applications: Prescribed Forms and Procedure) Regulations 2009 Sizewell benthic ecology characterisation TR348 Sizewell benthic ecology NOT PROTECTIVELY MARKED Page 1 of 122 characterisation TR348 Sizewell benthic ecology NOT PROTECTIVELY MARKED Page 2 of 122 characterisation Table of contents Executive summary ................................................................................................................................. 10 1 Context ............................................................................................................................................... 13 1.1 Purpose of the report................................................................................................................ 13 1.2 Thematic coverage ................................................................................................................... 13 1.3 Geographic coverage ............................................................................................................... 14 1.4 Data and information sources ................................................................................................... 17 1.4.1 BEEMS intertidal survey ................................................................................................. -
Marine Ecology Progress Series 569:15
The following supplement accompanies the article Post-settlement dispersal ability determines structure of marine benthic metacommunities Gustavo M. Martins*, Miguel G. Matias, Isadora Moniz, Carlos Rius, Josephine Sanderson, Ana I. Neto, Stuart R. Jenkins *Corresponding author: [email protected] Marine Ecology Progress Series 569: 15–23 (2017) Fig. S1. Photographs of experimental patches and metacommunities (groups of patches) deployed in an inhospitable soft-bottom subtidal habitat. 1 small metacommunity (sm) sand sm sm sm lm lm patch 20 m sm lm large metacommunity sm sm (lm) lm reef lm lm Fig. S2. Schematic representation of experimental design. Fig. S3. Numbers of species and total abundance in experimental patches after 3, 6 and 18 days of deployment and averaged (± SE) over our main experiment (2 months). 2 Table S1. List of taxa (species or morpho-species) identified present in the experimental turfs. Post- Subclass/ settlement Phylum Class Order Taxa dispersal Annelida Clitellata Oligochaeta Oligochaeta sp1 Motile Oligochaeta sp2 Motile Oligochaeta sp3 Motile Oligochaeta sp4 Motile Oligochaeta sp5 Motile Oligochaeta sp6 Motile Annelida Polychaeta Errantia Errantia sp1 Motile Errantia sp2 Motile Errantia sp3 Motile Errantia sp4 Motile Errantia sp5 Motile Errantia sp6 Motile Errantia sp7 Motile Errantia sp8 Motile Errantia sp9 Motile Errantia sp10 Motile Errantia sp11 Motile Errantia sp12 Motile Errantia sp13 Motile Errantia sp14 Motile Euphrosine foliosa Motile Sedentaria Sedentaria sp1 Sessile Spirorbid sp1 Sessile Spirorbid -
Pedro Emanuel Ferreira Dos Reis Vieira BIODIVERSIDADE E
Universidade de Aveiro Departamento de Biologia Ano 2017 Pedro Emanuel BIODIVERSIDADE E EVOLUÇÃO DA FAUNA DOS Ferreira dos Reis PERACARÍDEOS COSTEIROS DA MACARONÉSIA E Vieira NORDESTE ATLÂNTICO BIODIVERSITY AND EVOLUTION OF THE COASTAL PERACARIDEAN FAUNA OF MACARONESIA AND NORTHEAST ATLANTIC Universidade de Aveiro Departamento de Biologia Ano 2017 Pedro Emanuel BIODIVERSIDADE E EVOLUÇÃO DA FAUNA DOS Ferreira dos Reis PERACARÍDEOS COSTEIROS DA MACARONÉSIA E Vieira NORDESTE ATLÂNTICO BIODIVERSITY AND EVOLUTION OF THE COASTAL PERACARIDEAN FAUNA OF MACARONESIA AND NORTHEAST ATLANTIC Tese apresentada à Universidade de Aveiro para cumprimento dos requisitos necessários à obtenção do grau de Doutor em Biologia, realizada sob a orientação científica do Doutor Henrique Queiroga, Professor Associado do Departamento de Biologia da Universidade de Aveiro, Doutor Filipe José Oliveira Costa, Professor Auxiliar da Universidade do Minho e do Doutor Gary Robert Carvalho, Professor do Departamento de Biologia da Universidade de Bangor, País de Gales, Reino Unido. Apoio financeiro da FCT e do FSE no âmbito do III Quadro Comunitário através da atribuição da bolsa de doutoramento (SFRH/BD/86536/2012) Dedico este trabalho à minha mãe e à Sofia. o júri presidente Prof. Doutor Amadeu Mortágua Velho da Maia Soares professor catedrático da Universidade de Aveiro vogais Prof. Doutor João Carlos de Sousa Marques professor catedrático da Universidade de Coimbra Doutora Elsa Maria Branco Froufe Andrade investigadora auxiliar do CIIMAR – Centro Interdisciplinar de Investigação Marinha e Ambiental Prof. Doutora Maria Marina Pais Ribeiro da Cunha professora auxiliar da Universidade de Aveiro Prof. Doutor Filipe José de Oliveira Costa (coorientador) professor auxiliar da Universidade do Minho agradecimentos Gostaria de agradecer aos meus orientadores Henrique Queiroga e Filipe Costa pela oportunidade que me deram e por todo o apoio e liberdade que me disponibilizaram durante estes anos. -
Site Condition Monitoring of Maerl Beds and Seagrass Beds in the Sound of Barra SAC 2015 – Diving Survey
Scottish Natural Heritage Research Report No. 924 Site condition monitoring of maerl beds and seagrass beds in the Sound of Barra SAC 2015 – diving survey RESEARCH REPORT Research Report No. 924 Site condition monitoring of maerl beds and seagrass beds in the Sound of Barra SAC 2015 – diving survey For further information on this report please contact: Lisa Kamphausen Scottish Natural Heritage Great Glen House Leachkin Road INVERNESS IV3 8NW Telephone: 01463 725014 E-mail: [email protected] This report should be quoted as: Bunker, F.StP.D., Mercer, T.M., Howson, C.M., Moore, J.M., Diaz, P., Maggs, C.A. & Kamphausen, L. 2018. Site condition monitoring of maerl beds and seagrass beds in the Sound of Barra SAC 2015 – diving survey. Scottish Natural Heritage Research Report No. 924. This report, or any part of it, should not be reproduced without the permission of Scottish Natural Heritage. This permission will not be withheld unreasonably. The views expressed by the author(s) of this report should not be taken as the views and policies of Scottish Natural Heritage. © Scottish Natural Heritage 2018. RESEARCH REPORT Summary Site condition monitoring of maerl beds and seagrass beds in the Sound of Barra SAC 2015 – diving survey Research Report No. 882 Project No: 015666 Contractor: Aquatic Survey & Monitoring Ltd. Year of publication: 2018 Keywords marine survey; Sound of Barra SAC; maerl beds; seagrass beds; Zostera marina Background This report presents results of a survey which collected detailed biological information of seagrass beds and maerl beds in the Sound of Barra SAC. The survey built on previous broadscale mapping studies in the Sound of Barra SAC to continue inventory sampling, fill in gaps in coverage, and establish baseline monitoring with a focus on maerl beds and seagrass beds.