BASED FOSSIL RECORDS of TELEOST FISHES by WERNER SCHWARZHANS1,HERMIONET.BECKETT2 ,JASOND
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
CAT Vertebradosgt CDC CECON USAC 2019
Catálogo de Autoridades Taxonómicas de vertebrados de Guatemala CDC-CECON-USAC 2019 Centro de Datos para la Conservación (CDC) Centro de Estudios Conservacionistas (Cecon) Facultad de Ciencias Químicas y Farmacia Universidad de San Carlos de Guatemala Este documento fue elaborado por el Centro de Datos para la Conservación (CDC) del Centro de Estudios Conservacionistas (Cecon) de la Facultad de Ciencias Químicas y Farmacia de la Universidad de San Carlos de Guatemala. Guatemala, 2019 Textos y edición: Manolo J. García. Zoólogo CDC Primera edición, 2019 Centro de Estudios Conservacionistas (Cecon) de la Facultad de Ciencias Químicas y Farmacia de la Universidad de San Carlos de Guatemala ISBN: 978-9929-570-19-1 Cita sugerida: Centro de Estudios Conservacionistas [Cecon]. (2019). Catálogo de autoridades taxonómicas de vertebrados de Guatemala (Documento técnico). Guatemala: Centro de Datos para la Conservación [CDC], Centro de Estudios Conservacionistas [Cecon], Facultad de Ciencias Químicas y Farmacia, Universidad de San Carlos de Guatemala [Usac]. Índice 1. Presentación ............................................................................................ 4 2. Directrices generales para uso del CAT .............................................. 5 2.1 El grupo objetivo ..................................................................... 5 2.2 Categorías taxonómicas ......................................................... 5 2.3 Nombre de autoridades .......................................................... 5 2.4 Estatus taxonómico -
New Insights on the Sister Lineage of Percomorph Fishes with an Anchored Hybrid Enrichment Dataset
Molecular Phylogenetics and Evolution 110 (2017) 27–38 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev New insights on the sister lineage of percomorph fishes with an anchored hybrid enrichment dataset ⇑ Alex Dornburg a, , Jeffrey P. Townsend b,c,d, Willa Brooks a, Elizabeth Spriggs b, Ron I. Eytan e, Jon A. Moore f,g, Peter C. Wainwright h, Alan Lemmon i, Emily Moriarty Lemmon j, Thomas J. Near b,k a North Carolina Museum of Natural Sciences, Raleigh, NC, USA b Department of Ecology & Evolutionary Biology and Peabody Museum of Natural History, Yale University, New Haven, CT 06520, USA c Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, USA d Department of Biostatistics, Yale University, New Haven, CT 06510, USA e Marine Biology Department, Texas A&M University at Galveston, Galveston, TX 77554, USA f Florida Atlantic University, Wilkes Honors College, Jupiter, FL 33458, USA g Florida Atlantic University, Harbor Branch Oceanographic Institution, Fort Pierce, FL 34946, USA h Department of Evolution & Ecology, University of California, Davis, CA 95616, USA i Department of Scientific Computing, Florida State University, 400 Dirac Science Library, Tallahassee, FL 32306, USA j Department of Biological Science, Florida State University, 319 Stadium Drive, Tallahassee, FL 32306, USA k Peabody Museum of Natural History, Yale University, New Haven, CT 06520, USA article info abstract Article history: Percomorph fishes represent over 17,100 species, including several model organisms and species of eco- Received 12 April 2016 nomic importance. Despite continuous advances in the resolution of the percomorph Tree of Life, resolu- Revised 22 February 2017 tion of the sister lineage to Percomorpha remains inconsistent but restricted to a small number of Accepted 25 February 2017 candidate lineages. -
The Lithostratigraphy and Biostratigraphy of the Chalk Group (Upper Coniacian 1 to Upper Campanian) at Scratchell’S Bay and Alum Bay, Isle of Wight, UK
Manuscript Click here to view linked References The lithostratigraphy and biostratigraphy of the Chalk Group (Upper Coniacian 1 to Upper Campanian) at Scratchell’s Bay and Alum Bay, Isle of Wight, UK. 2 3 Peter Hopson1*, Andrew Farrant1, Ian Wilkinson1, Mark Woods1 , Sev Kender1 4 2 5 and Sofie Jehle , 6 7 1 British Geological Survey, Sir Kingsley Dunham Centre, Nottingham, NG12 8 5GG. 9 2 10 University of Tübingen, Sigwartstraße 10, 72074 Tübingen, Germany 11 12 * corresponding author [email protected] 13 14 Keywords: Cretaceous, Isle of Wight, Chalk, lithostratigraphy, biostratigraphy, 15 16 17 Abstract 18 19 The Scratchell‟s Bay and southern Alum Bay sections, in the extreme west of the Isle 20 21 of Wight on the Needles promontory, cover the stratigraphically highest Chalk Group 22 formations available in southern England. They are relatively inaccessible, other than 23 by boat, and despite being a virtually unbroken succession they have not received the 24 attention afforded to the Whitecliff GCR (Geological Conservation Review series) 25 site at the eastern extremity of the island. A detailed account of the lithostratigraphy 26 27 of the strata in Scratchell‟s Bay is presented and integrated with macro and micro 28 biostratigraphical results for each formation present. Comparisons are made with 29 earlier work to provide a comprehensive description of the Seaford Chalk, Newhaven 30 Chalk, Culver Chalk and Portsdown Chalk formations for the Needles promontory. 31 32 33 The strata described are correlated with those seen in the Culver Down Cliffs – 34 Whitecliff Bay at the eastern end of the island that form the Whitecliff GCR site. -
Ecography ECOG-01937 Hattab, T., Leprieur, F., Ben Rais Lasram, F., Gravel, D., Le Loc’H, F
Ecography ECOG-01937 Hattab, T., Leprieur, F., Ben Rais Lasram, F., Gravel, D., Le Loc’h, F. and Albouy, C. 2016. Forecasting fine- scale changes in the food-web structure of coastal marine communities under climate change. – Ecography doi: 10.1111/ecog.01937 Supplementary material Forecasting fine-scale changes in the food-web structure of coastal marine communities under climate change by Hattab et al. Appendix 1 List of coastal exploited marine species considered in this study Species Genus Order Family Class Trophic guild Auxis rochei rochei (Risso, 1810) Auxis Perciformes Scombridae Actinopterygii Top predators Balistes capriscus Gmelin, 1789 Balistes Tetraodontiformes Balistidae Actinopterygii Macro-carnivorous Boops boops (Linnaeus, 1758) Boops Perciformes Sparidae Actinopterygii Basal species Carcharhinus plumbeus (Nardo, 1827) Carcharhinus Carcharhiniformes Carcharhinidae Elasmobranchii Top predators Dasyatis pastinaca (Linnaeus, 1758) Dasyatis Rajiformes Dasyatidae Elasmobranchii Top predators Dentex dentex (Linnaeus, 1758) Dentex Perciformes Sparidae Actinopterygii Macro-carnivorous Dentex maroccanus Valenciennes, 1830 Dentex Perciformes Sparidae Actinopterygii Macro-carnivorous Diplodus annularis (Linnaeus, 1758) Diplodus Perciformes Sparidae Actinopterygii Forage species Diplodus sargus sargus (Linnaeus, 1758) Diplodus Perciformes Sparidae Actinopterygii Macro-carnivorous (Geoffroy Saint- Diplodus vulgaris Hilaire, 1817) Diplodus Perciformes Sparidae Actinopterygii Basal species Engraulis encrasicolus (Linnaeus, 1758) Engraulis -
Recent Data of Maximum Age and Length of Painted Comber Serranus Scriba (Linnaeus, 1758) in Mediterranean Sea
ISSN: 0001-5113 ACTA ADRIAT., UDC: 594.1 (497.5) (262.3) AADRAY 51(2): 223 - 226, 2010 Recent data of maximum age and length of painted comber Serranus scriba (Linnaeus, 1758) in Mediterranean Sea Barbara ZORICA*, Armin PALLAORO, Gorenka SINOVČIĆ and Vanja ČIKEŠ KEČ Institute of Oceanography and Fisheries, P.O. Box 500, 21 000 Split, Croatia *Corresponding author, e-mail: [email protected] The present study was undertaken not only to register the new recently noticed maximum age and total length of Serranus scriba (Linnaeus, 1758), contributing to the knowledge of this species in the Mediterranean and Adriatic Sea inclusively. A painted comber specimen of 323 mm of total length and age 16 years was caught during August 2008 in the Lavdra Channel (middle-eastern Adriatic Sea). Key words: Serranus scriba, Serranidae, maximum length, maximum age, Adriatic Sea, Mediterranean INTRODUCTION (43º55’N and 15º13’E) by a fishhook at a depth of 3.5 m. All lengths of the specimen were In fisheries science, theoretical parameters measured up to the nearest 0.1 cm and weighed such as maximum length, weight and age are with an electric balance to the nearest 0.1 g. The very important as they directly and indirectly sagittal otolith was removed by opening the otic enter into most of the models used in stock bulla under the operculum, washed in freshwa- assessments (BORGES, 2001). Thereupon, updat- ter and stored in plastic tube prior to ageing. ing the maximum size of a species that might The fish was dissected for determination of become commercially exploited is significant. -
Annotated Checklist of Fossil Fishes from the Smoky Hill Chalk of the Niobrara Chalk (Upper Cretaceous) in Kansas
Lucas, S. G. and Sullivan, R.M., eds., 2006, Late Cretaceous vertebrates from the Western Interior. New Mexico Museum of Natural History and Science Bulletin 35. 193 ANNOTATED CHECKLIST OF FOSSIL FISHES FROM THE SMOKY HILL CHALK OF THE NIOBRARA CHALK (UPPER CRETACEOUS) IN KANSAS KENSHU SHIMADA1 AND CHRISTOPHER FIELITZ2 1Environmental Science Program and Department of Biological Sciences, DePaul University,2325 North Clifton Avenue, Chicago, Illinois 60614; and Sternberg Museum of Natural History, Fort Hays State University, 3000 Sternberg Drive, Hays, Kansas 67601;2Department of Biology, Emory & Henry College, P.O. Box 947, Emory, Virginia 24327 Abstract—The Smoky Hill Chalk Member of the Niobrara Chalk is an Upper Cretaceous marine deposit found in Kansas and adjacent states in North America. The rock, which was formed under the Western Interior Sea, has a long history of yielding spectacular fossil marine vertebrates, including fishes. Here, we present an annotated taxo- nomic list of fossil fishes (= non-tetrapod vertebrates) described from the Smoky Hill Chalk based on published records. Our study shows that there are a total of 643 referable paleoichthyological specimens from the Smoky Hill Chalk documented in literature of which 133 belong to chondrichthyans and 510 to osteichthyans. These 643 specimens support the occurrence of a minimum of 70 species, comprising at least 16 chondrichthyans and 54 osteichthyans. Of these 70 species, 44 are represented by type specimens from the Smoky Hill Chalk. However, it must be noted that the fossil record of Niobrara fishes shows evidence of preservation, collecting, and research biases, and that the paleofauna is a time-averaged assemblage over five million years of chalk deposition. -
(Early Palaeocene), Withers, 1914
Meded. Werkgr. Tert. Kwart. Geol. 25(2-3) 175-196 2 figs, 1 pi. Leiden, oktober 1988 The biostratigraphy of the Geulhem Member (Early Palaeocene), with reference to the occurrence of Pycnolepas bruennichi Withers, 1914 (Crustacea, Cirripedia) by J.W.M. Jagt Venlo, The Netherlands and J.S.H. Collins London, United Kingdom Jagt, &J.S.H. Collins. The biostratigraphy of the Geulhem reference of Member (Early Palaeocene), with to the occurrence Pyc- nolepas bruennichi Withers, 1914 (Crustacea, Cirripedia).—Meded. Werkgr. Tert. Kwart. Geol., 25(2-3): 175-196, 2 figs, 1 pi. Leiden, October 1988. Valves of the brachylepadomorph cirripede Pycnolepas bruennichi Withers, 1914 are reported from the Early Palaeocene of the environs of Maastricht (The Netherlands and NE Belgium). The occurrenceof this distinctive species provides additional proof of a correlationof the with the in Maastricht Danish Danian Early Palaeocene the area. A discussion of the biostratigraphy of the Geulhem Member (Houthem Formation) from which the cirripede remains were collected is presented. It is concluded that P. bruennichi is restricted to strata of Palaeocene in Denmark well in the Early (Danian) age as as Maastrichtian type area (SE Netherlands, NE Belgium). John W.M. Jagt, 2de Maasveldstraat 47, 5921 JN Venlo, The Netherlands; J. S.H. Collins, 63 Oakhurst Grove, East Dulwich, Lon- don SE22 9AH, United Kingdom. Contents 176 Samenvatting, p. Introduction, p. 176 177 Systematic description, p. and distribution of P. 178 Stratigraphic geographic bruennichi, p. of the Geulhem 182 Stratigraphy Member, p. Conclusion, p. 190 191 Acknowledgements, p. References, p. 191. 176 Samenvatting De de Geulhem Kalksteen voorkomen biostratigrafie van (Vroeg Paleoceen) naar aanleiding van het 1914 van Pycnolepas bruennichi Withers, (Crustacea, Cirripedia). -
SHORT COMMUNICATION Rapid Visual Assessment of Fish
Western Indian Ocean J. Mar. Sci. Vol. 9, No. 1, pp. 115 - 134, 2010 © 2010 WIOMSA SHORT COMMUNICATION Rapid Visual Assessment of Fish Communities on Selected Reefs in the Bazaruto Archipelago Jade Q. Maggs1, Camilla Floros1, Marcos A.M. Pereira2 and Michael H. Schleyer1 1Oceanographic Research Institute, P.O. Box 10712, Marine Parade, 4056 South Africa; 2Associação para Investigação Costeira e Marinha (AICM), P.O. Box 2046, Maputo, Mozambique. Keywords: Bazaruto Archipelago, Mozambique, ichthyofauna, fish surveys, underwater visual census, coral reefs. Abstract— Rapid visual censuses were conducted of fish on eight coral reefs in the Bazaruto Archipelago, Mozambique, in 2007. SCUBA and snorkelling were used for the censuses in depths between 1-20 m, yielding an inventory of 249 fish species belonging to 50 families. This is intended to serve as a baseline for more detailed studies and monitoring programmes in the future. Although fewer species were recorded relative to other studies conducted in the Western Indian Ocean, the trophic structure on Bazaruto’s reefs proved typical for the region, indicating a relative measure of reef health. However, other regional studies were not directly comparable, differing in habitat, duration of sampling effort and methodology. This highlighted the need for a long-term monitoring programme specifically adapted for the Bazaruto reef types to provide a basis for their sound management and conservation. INTRODUCTION Mozambique in the Western Indian Ocean (WIO). The seas around the The Bazaruto Archipelago consists archipelago are rich in marine life of five islands and is located and provide an important source approximately 20 km off the coast of of protein to the local community Corresponding Author: JQM E-mail: [email protected] 116 J. -
Table S1.Xlsx
Bone type Bone type Taxonomy Order/series Family Valid binomial Outdated binomial Notes Reference(s) (skeletal bone) (scales) Actinopterygii Incertae sedis Incertae sedis Incertae sedis †Birgeria stensioei cellular this study †Birgeria groenlandica cellular Ørvig, 1978 †Eurynotus crenatus cellular Goodrich, 1907; Schultze, 2016 †Mimipiscis toombsi †Mimia toombsi cellular Richter & Smith, 1995 †Moythomasia sp. cellular cellular Sire et al., 2009; Schultze, 2016 †Cheirolepidiformes †Cheirolepididae †Cheirolepis canadensis cellular cellular Goodrich, 1907; Sire et al., 2009; Zylberberg et al., 2016; Meunier et al. 2018a; this study Cladistia Polypteriformes Polypteridae †Bawitius sp. cellular Meunier et al., 2016 †Dajetella sudamericana cellular cellular Gayet & Meunier, 1992 Erpetoichthys calabaricus Calamoichthys sp. cellular Moss, 1961a; this study †Pollia suarezi cellular cellular Meunier & Gayet, 1996 Polypterus bichir cellular cellular Kölliker, 1859; Stéphan, 1900; Goodrich, 1907; Ørvig, 1978 Polypterus delhezi cellular this study Polypterus ornatipinnis cellular Totland et al., 2011 Polypterus senegalus cellular Sire et al., 2009 Polypterus sp. cellular Moss, 1961a †Scanilepis sp. cellular Sire et al., 2009 †Scanilepis dubia cellular cellular Ørvig, 1978 †Saurichthyiformes †Saurichthyidae †Saurichthys sp. cellular Scheyer et al., 2014 Chondrostei †Chondrosteiformes †Chondrosteidae †Chondrosteus acipenseroides cellular this study Acipenseriformes Acipenseridae Acipenser baerii cellular Leprévost et al., 2017 Acipenser gueldenstaedtii -
A New Osteolepidid Fish From
Rea. West. Aust. MU8. 1985, 12(3): 361-377 ANew Osteolepidid Fish from the Upper Devonian Gogo Formation, Western Australia J.A. Long* Abstract A new osteolepidid crossopterygian, Gogonasus andrewsi gen. et sp. nov., is des cribed from a single fronto-ethmoidal shield and associated ethmosphenoid, from the Late Devonian (Frasnian) Gogo Formation, Western Australia. Gogonasus is is distinguished from other osteolepids by the shape and proportions of the fronto ethmoidal shield, absence of palatal fenestrae, well developed basipterygoid pro cesses and moderately broad parasphenoid. The family Osteolepididae is found to be paraphyletic, with Gogonasus being regarded as a plesiomorphic osteolepidid at a similar level of organisation to Thursius. Introduction Much has been published on the well-preserved Late Devonian fish fauna from the Gogo Formation, Western Australia, although to date all the papers describing fish have been on placoderms (Miles 1971; Miles and Dennis 1979; Dennis and Miles 1979-1983; Young 1984), palaeoniscoids (Gardiner 1973, 1984; Gardiner and Bartram 1977) or dipnoans (Miles 1977; Campbell and Barwick 1982a, 1982b, 1983, 1984a). This paper describes the only osteolepiform from the fauna (Gardiner and Miles 1975), a small snout with associated braincase, ANU 21885, housed in the Geology Department, Australian National University. The specimen, collected by the Australian National University on the 1967 Gogo Expedition, was prepared by Dr S.M. Andrews (Royal Scottish Museum) and later returned to the ANU. Onychodus is the only other crossopterygian in the fauna. In its proportions and palatal structure the new specimen provides some additional new points of the anatomy of osteolepiforms. Few Devonian crossopte rygians are known from Australia, and so the specimen is significant in having resemblances to typical Northern Hemisphere species. -
'Placoderm' (Arthrodira)
Jobbins et al. Swiss J Palaeontol (2021) 140:2 https://doi.org/10.1186/s13358-020-00212-w Swiss Journal of Palaeontology RESEARCH ARTICLE Open Access A large Middle Devonian eubrachythoracid ‘placoderm’ (Arthrodira) jaw from northern Gondwana Melina Jobbins1* , Martin Rücklin2, Thodoris Argyriou3 and Christian Klug1 Abstract For the understanding of the evolution of jawed vertebrates and jaws and teeth, ‘placoderms’ are crucial as they exhibit an impressive morphological disparity associated with the early stages of this process. The Devonian of Morocco is famous for its rich occurrences of arthrodire ‘placoderms’. While Late Devonian strata are rich in arthrodire remains, they are less common in older strata. Here, we describe a large tooth-bearing jaw element of Leptodontich- thys ziregensis gen. et sp. nov., an eubrachythoracid arthrodire from the Middle Devonian of Morocco. This species is based on a large posterior superognathal with a strong dentition. The jawbone displays features considered syna- pomorphies of Late Devonian eubrachythoracid arthrodires, with one posterior and one lateral row of conical teeth oriented postero-lingually. μCT-images reveal internal structures including pulp cavities and dentinous tissues. The posterior orientation of the teeth and the traces of a putative occlusal contact on the lingual side of the bone imply that these teeth were hardly used for feeding. Similar to Compagopiscis and Plourdosteus, functional teeth were pos- sibly present during an earlier developmental stage and have been worn entirely. The morphological features of the jaw element suggest a close relationship with plourdosteids. Its size implies that the animal was rather large. Keywords: Arthrodira, Dentition, Food web, Givetian, Maïder basin, Palaeoecology Introduction important to reconstruct character evolution in early ‘Placoderms’ are considered as a paraphyletic grade vertebrates.