p. 1 Submitted to MBE as Research Article Mitochondrial Genomes of Clymenella torquata (Maldanidae) and Riftia pachyptila (Siboglinidae): Evidence for Conserved Gene Order in Annelida Robert M. Jennings* and Kenneth M. Halanych*,† * Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543 USA email:
[email protected] † Department of Biological Sciences, Auburn University, Auburn, Alabama 36849 USA email:
[email protected] Running Title: Annelid mtDNA Key Words: Phylogeny, gene order, mitochondria, genome, Annelida Contact information: Ken Halanych Department of Biological Sciences 101 Life Science Building Auburn University, AL 36849 Phone: (334) 844-3222 Fax: (334) 844-2333 Email:
[email protected] p. 2 Abstract Mitochondrial genomes are useful tools for inferring evolutionary history. However, many taxa are poorly represented by available data. Thus, to further understand the phylogenetic potential of complete mitochondrial genome sequence data in Annelida (segmented worms), we examined the complete mitochondrial sequence for Clymenella torquata (Maldanidae) and an estimated 80% of the sequence of Riftia pachyptila (Siboglinidae). These genomes have remarkably similar gene orders to previously published annelid genomes, suggesting that gene order is conserved across annelids. This result is interesting given the high variation seen in the closely related Mollusca and Brachiopoda. Phylogenetic analyses of DNA sequence, amino acid sequence and gene order all support the recent hypothesis that Sipuncula and Annelida are closely related. Our findings suggest that gene order data is of limited utility in annelids but that sequence data holds promise. Additionally, these genomes show AT bias (~66%) and codon usage biases, but have a typical gene complement for bilaterian mitochondrial genomes. p.