DOGAMI Open-File Report O-86-06, the State of Scientific
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Diversity of Bacteria and Archaea in the Deep-Sea Low-Temperature Hydrothermal Sulfide Chimney of the Northeastern Pacific Ocean
African Journal of Biotechnology Vol. 11(2), pp. 337-345, 5 January, 2012 Available online at http://www.academicjournals.org/AJB DOI: 10.5897/AJB11.2692 ISSN 1684–5315 © 2012 Academic Journals Full Length Research Paper Diversity of bacteria and archaea in the deep-sea low-temperature hydrothermal sulfide chimney of the Northeastern Pacific Ocean Xia Ding1*, Xiao-Jue Peng1#, Xiao-Tong Peng2 and Huai-Yang Zhou3 1College of Life Sciences and Key Laboratory of Poyang Lake Environment and Resource Utilization, Ministry of Education, Nanchang University, Nanchang 330031, China. 2Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China. 3National Key Laboratory of Marine Geology, Tongji University, Shanghai 200092, China. Accepted 4 November, 2011 Our knowledge of the diversity and role of hydrothermal vents microorganisms has considerably expanded over the past decade, while little is known about the diversity of microorganisms in low-temperature hydrothermal sulfide chimney. In this study, denaturing gradient gel electrophoresis (DGGE) and 16S rDNA sequencing were used to examine the abundance and diversity of microorganisms from the exterior to the interior of the deep sea low-temperature hydrothermal sulfide chimney of the Northeastern Pacific Ocean. DGGE profiles revealed that both bacteria and archaea could be examined in all three zones of the chimney wall and the compositions of microbial communities within different zones were vastly different. Overall, for archaea, cell abundance was greatest in the outermost zone of the chimney wall. For bacteria, there was no significant difference in cell abundance among three zones. In addition, phylogenetic analysis revealed that Verrucomicrobia and Deltaproteobacteria were the predominant bacterial members in exterior zone, beta Proteobacteria were the dominant members in middle zone, and Bacillus were the abundant microorganisms in interior zone. -
Pineda-Salgado, 2020 CD
Universidad Nacional de La Plata Facultad de Ciencias Naturales y Museo Análisis de concentraciones fósiles en la Formación Monte León (Mioceno inferior), en la costa de la provincia de Santa Cruz Gabriela Pineda Salgado Tesis doctoral Directores: Miguel Griffin, Ana Parras 2020 A mi mamá, mi abuela y mi abuelichi A Señor Pantufla y Spock-Uhura, los félidos con más estilo Agradecimientos Al Posgrado de la Facultad de Ciencias Naturales y Museo de la Universidad Nacional de La Plata. A los doctores Miguel Griffin y Ana Parras por dirigirme, por todas las facilidades brindadas para la realización de este trabajo, así como por su ayuda en las labores de campo y por los apoyos obtenidos para exponer parte de los resultados del mismo en reuniones nacionales e internacionales. Al jurado conformado por los doctores Claudia del Río, Miguel Manceñido y Sven Nielsen. A la Agencia Nacional de Promoción Científica y Tecnológica (ANPCyT) por la beca doctoral otorgada a través del Fondo para la Investigación Científica y Tecnológica (FONCyT), en el marco del Proyecto de Investigación Científica y Tecnológica PICT 2012-1726. Al Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET) por la beca interna de finalización de doctorado otorgada durante el periodo 2017-2019. Al Instituto de Ciencias de la Tierra y Ambientales de La Pampa (INCITAP, CONICET- UNLPam) y a la Facultad de Ciencias Exactas y Naturales de la UNLPam por ceder el espacio institucional para el desarrollo de esta tesis. A la Administración de Parques Nacionales por autorizar la recolección de muestras en los límites del Parque Nacional Monte León. -
FORMATION of HABITABLE WORLDS and FATE of HABITABLE ENVIRONMENTS 6:00 P.M
45th Lunar and Planetary Science Conference (2014) sess726.pdf Thursday, March 20, 2014 [R726] POSTER SESSION: FORMATION OF HABITABLE WORLDS AND FATE OF HABITABLE ENVIRONMENTS 6:00 p.m. Town Center Exhibit Area Johnson T. A. Park A. Hand K. P. POSTER LOCATION #473 The Workman-Reynolds Effect: An Investigation of the Ice-Water Interface of Dilute Salt Solutions [#1672] We report on experiments on the voltage potential that results from rapidly freezing dilute aqueous solutions. These results have application to icy satellites. Taylor A. R. Olsen A. A. Hausrath E. M. POSTER LOCATION #474 Serpentinite Dissolution: An Analog to Mantle-Ocean Interaction on Europa [#1903] Laboratory-based dissolution experiments between serpentinite rock and a variety of acids represent mantle-ocean interaction on the jovian moon, Europa. Hausrath E. M. Adcock C. T. Elwood Madden M. E. Gainey S. R. Olsen A. A. et al. POSTER LOCATION #475 Using Geochemical Kinetics to Interpret Potential Habitability [#2376] Geochemical kinetics can help shed light on factors affecting habitability, including water, release of nutrients, redox, pH, temperature, and ionic strength. Som S. M. Fristad K. E. Hoehler T. M. POSTER LOCATION #476 An Integrative Approach to Assessing Habitability of H2 Metabolisms in Hydrothermal Springs [#2828] We present an ongoing project that surveys H2 from springs sourced in rocks of varying silica content and in parallel investigate habitability numerically. Djordjevic S. Mickol R. L. Kral T. A. POSTER LOCATION #477 Simulating Martian Conditions: Methanogen Survivability During Freeze-Thaw Cycles [#2539] Methanogens are obligate anaerobes that tolerate a wide range of conditions. It is proposed that these Archaea are able to persist in a martian environment. -
Lab 8: Arthropoda OEB 51 Lab 8: Arthropoda
Lab 8: Arthropoda OEB 51 Lab 8: Arthropoda 6 April 2016 ATTENTION: Today we will be examining several preserved specimens from along the arthropod diversity and some exciting live specimens that you have not seen in the fieldtrip! Please keep all preserved specimens submerged. Examine using forceps and probes – be careful not to damage or remove the limbs of any specimen. And remember to return the specimen to its original spot in the lateral bench so your friends can find the animals properly labeled. • For each specimen, even when specific instructions are not given, make detailed observations and drawings and take notes on important characters in the evolution of arthropods, such as tagmata and adaptations to the specific environment where the organism lives. 1 Lab 8: Arthropoda OEB 51 Myriapoda With these living myriapods, take the opportunity to make a few notes on behavior – locomotory, hygienic (they frequently clean their antennae). CHOOSE ONE • Chilopoda (live) Do not handle these centipedes directly, as they are venomous (not deadly, but still). Watch these animals move, but don’t let them escape! Try to draw if you can. Compare to the large, preserved Scolopendra gigantea (MCZ specimen). Draw from the preserved for more morphological details. • Diplopoda (live) Contrary to centipedes, millipedes are docile (but they have deterrent substances, like cyanide compounds, which you might be able to smell after handling the specimens). Observe their movement. Make a sketch of the whole body and drawings of specific parts in more detail. • What is the most conspicuous difference between these two groups of myriapods? 2 Lab 8: Arthropoda OEB 51 Pycnogonida • Colossendeis colossea (Museum specimens, handle with care) • What characteristics of pycnogonids are not found in other arthropods? 3 Lab 8: Arthropoda OEB 51 Chelicerata • Xiphosura – Limulus (horseshoe crab). -
Female Description of the Hydrothermal Vent Cephalopod Vulcanoctopus Hydrothermalis A.F
Journal of the Marine Biological Association of the United Kingdom, 2008, 88(2), 375–379. #2008 Marine Biological Association of the United Kingdom doi:10.1017/S0025315408000647 Printed in the United Kingdom Female description of the hydrothermal vent cephalopod Vulcanoctopus hydrothermalis a.f. gonzÆlez1, a. guerra1, s. pascual1 and m. segonzac2 1ECOBIOMAR, Instituto de Investigaciones Marinas (CSIC), Eduardo Cabello 6, 36208 Vigo, Spain, 2IFREMER, Centre de Brest, Laboratoire Environnement Profond, BP 70, 29280-Plouzane´, France During biological sampling of hydrothermal vents on the East Pacific Rise, the manned submersible ‘Nautile’ caught the first female of the endemic cephalopod Vulcanoctopus hydrothermalis. The specimen caught at the vent site Gromit (21833 660S, 114817 980W at 2832 m depth) is described here in detail and an amended diagnosis of the species proposed. The external morphology, measurements and internal structure resemble that of males of this species. One of the most remarkable char- acters is the lack of spermathecae and the absence of apical filaments in the oocytes to provide a site for sperm storage. It is suggested that some species of the genera Benthoctopus and Bathypolypus would be the most suitable octopod ancestor of V. hydrothermalis. Keywords: hydrothermal vent, cephalopods, Vulcanoctopus hydrothermalis, female description Submitted 20 April 2007; accepted 29 November 2007 INTRODUCTION et al., 2006). It inhabits an isolated extreme environment very close to the base of the chimneys and is also observed The study of chemosynthetic ecosystems in the deep sea rep- on the pillow lava at several metres from the active areas. resents a challenging issue due to the difficulty of sampling, This benthic species has characters that represent adaptations which involves the use of modern technologies such as either to the deep-sea or to a hydrothermal vent habitat manned submersibles. -
Susceptibility of Archaea to Antimicrobial Agents: Applications to Clinical Microbiology
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector REVIEW 10.1111/j.1469-0691.2012.03913.x Susceptibility of archaea to antimicrobial agents: applications to clinical microbiology S. Khelaifia and M. Drancourt Unite´ de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, UMR CNRS 6236 IRD 3R198, Me´diterrane´e Infection, Faculte´ de Me´decine, Aix-marseille-Universite´, Marseille, France Abstract We herein review the state of knowledge regarding the in vitro and in vivo susceptibility of archaea to antimicrobial agents, including some new molecules. Indeed, some archaea colonizing the human microbiota have been implicated in diseases such as periodontopathy. Archaea are characterized by their broad-spectrum resistance to antimicrobial agents. In particular, their cell wall lacks peptidoglycan, making them resistant to antimicrobial agents interfering with peptidoglycan biosynthesis. Archaea are, however, susceptible to the pro- tein synthesis inhibitor fusidic acid and imidazole derivatives. Also, squalamine, an antimicrobial agent acting on the cell wall, proved effective against human methanogenic archaea. In vitro susceptibility data could be used to design protocols for the decontamination of complex microbiota and the selective isolation of archaea in anaerobic culture. Keywords: Antimicrobial agent, archaea, methanogenic archaea, microbiota, susceptibility testing Article published online: 23 May 2012 Clin Microbiol Infect 2012; 18: 841–848 Corresponding author: M. Drancourt, Unite´ des Rickettsies, Fa- culte´ de Me´decine, 27, Boulevard Jean Moulin-Cedex 5, France E-mail: [email protected] Methanogenic archaea (herein referred to as methano- Introduction gens) are the sole organisms producing methane from H2 +CO2 [6]. -
The Lower Bathyal and Abyssal Seafloor Fauna of Eastern Australia T
O’Hara et al. Marine Biodiversity Records (2020) 13:11 https://doi.org/10.1186/s41200-020-00194-1 RESEARCH Open Access The lower bathyal and abyssal seafloor fauna of eastern Australia T. D. O’Hara1* , A. Williams2, S. T. Ahyong3, P. Alderslade2, T. Alvestad4, D. Bray1, I. Burghardt3, N. Budaeva4, F. Criscione3, A. L. Crowther5, M. Ekins6, M. Eléaume7, C. A. Farrelly1, J. K. Finn1, M. N. Georgieva8, A. Graham9, M. Gomon1, K. Gowlett-Holmes2, L. M. Gunton3, A. Hallan3, A. M. Hosie10, P. Hutchings3,11, H. Kise12, F. Köhler3, J. A. Konsgrud4, E. Kupriyanova3,11,C.C.Lu1, M. Mackenzie1, C. Mah13, H. MacIntosh1, K. L. Merrin1, A. Miskelly3, M. L. Mitchell1, K. Moore14, A. Murray3,P.M.O’Loughlin1, H. Paxton3,11, J. J. Pogonoski9, D. Staples1, J. E. Watson1, R. S. Wilson1, J. Zhang3,15 and N. J. Bax2,16 Abstract Background: Our knowledge of the benthic fauna at lower bathyal to abyssal (LBA, > 2000 m) depths off Eastern Australia was very limited with only a few samples having been collected from these habitats over the last 150 years. In May–June 2017, the IN2017_V03 expedition of the RV Investigator sampled LBA benthic communities along the lower slope and abyss of Australia’s eastern margin from off mid-Tasmania (42°S) to the Coral Sea (23°S), with particular emphasis on describing and analysing patterns of biodiversity that occur within a newly declared network of offshore marine parks. Methods: The study design was to deploy a 4 m (metal) beam trawl and Brenke sled to collect samples on soft sediment substrata at the target seafloor depths of 2500 and 4000 m at every 1.5 degrees of latitude along the western boundary of the Tasman Sea from 42° to 23°S, traversing seven Australian Marine Parks. -
Mechanics Unlocks the Morphogenetic Puzzle of Interlocking Bivalved Shells
Mechanics unlocks the morphogenetic puzzle of interlocking bivalved shells Derek E. Moultona,1 , Alain Gorielya , and Regis´ Chiratb aMathematical Institute, University of Oxford, Oxford, OX2 6GG, United Kingdom; and bCNRS 5276, LGL-TPE (Le Laboratoire de Geologie´ de Lyon: Terre, Planetes,` Environnement), Universite´ Lyon 1, 69622 Villeurbanne Cedex, France Edited by Sean H. Rice, Texas Tech University, Lubbock, TX, and accepted by Editorial Board Member David Jablonski November 11, 2019 (received for review September 24, 2019) Brachiopods and mollusks are 2 shell-bearing phyla that diverged tal events causing shell injuries. Yet, in all cases the interlocking from a common shell-less ancestor more than 540 million years ago. of the 2 shell edges is tightly maintained. These observations Brachiopods and bivalve mollusks have also convergently evolved imply that the interlocking pattern emerges as the result of epi- a bivalved shell that displays an apparently mundane, yet strik- genetic interactions modulating the behavior of the secreting ing feature from a developmental point of view: When the shell mantle during shell development. is closed, the 2 valve edges meet each other in a commissure that Here, we provide a geometric and mechanical explanation forms a continuum with no gaps or overlaps despite the fact that for this morphological trait based on a detailed analysis of the each valve, secreted by 2 mantle lobes, may present antisymmet- shell geometry during growth and the physical interaction of the ric ornamental patterns of varying regularity and size. Interlock- shell-secreting soft mantle with both the rigid shell edge and ing is maintained throughout the entirety of development, even the opposing mantle lobe. -
Gastropoda: Turbinellidae)
Ruthenica, 200 I, II (2): 81-136. ©Ruthenica, 2001 A revision of the Recent species of Exilia, formerly Benthovoluta (Gastropoda: Turbinellidae) I 2 3 Yuri I. KANTOR , Philippe BOUCHET , Anton OLEINIK 1 A.N. Severtzov Institute of Problems of Evolution of the Russian Academy of Sciences, Leninski prosp. 33, Moscow 117071, RUSSIA; 2 Museum national d'Histoire naturelle, 55, Rue BufJon, 75005 Paris, FRANCE; 3 Department of Geography & Geology Florida Atlantic University, 777 Glades Rd, Physical Sciences Building, PS 336, Boca Raton FL 33431-0991, USA ABSTRACT. The range of shell characters (overall established among some of these nominal taxa. shape, sculpture, columellar plaits, protoconchs) Schematically, Exilia Conrad, 1860, Palaeorhaphis exhibited by fossil and Recent species placed in Stewart, 1927, and Graphidula Stephenson, 1941 Exilia Conrad, 1860, Mitraefusus Bellardi, 1873, are currently used as valid genera for Late Creta Mesorhytis Meek, 1876, Surculina Dall, 1908, Phe ceous to Neogene fossils; and Surculina Dall, 1908 nacoptygma Dall, 1918, Palaeorhaphis Stewart, 1927, and Benthovoluta Kuroda et Habe, 1950 are cur Zexilia Finlay, 1926, Graphidula Stephenson, 1941, rently used as valid genera for Recent deep-water Benthovoluta Kuroda et Habe, 1950, and Chatha species from middle to low latitudes. Each of these midia Dell, 1956 and the anatomy of the Recent nominal taxa has had a complex history of family species precludes separation of more than one genus. allocation, which has not facilitated comparisons Consequently all of these nominal genera are sy on a broader scale. Exilia and Benthovoluta are the nonymised with Exilia, with a stratigraphical range genera best known in the fossil and Recent litera from Late Cretaceous to Recent. -
Foregut Anatomy of the Cochlespirinae (Gastropoda, Conoidea, Turridae)
Foregut anatomy of the Cochlespirinae (Gastropoda, Conoidea, Turridae) Alexandra I. MEDINSKAYA A. N. Severtzov Institute of Problems of Evolution, Leninsky Prospect 33, Moscow 117071 (Russia) Medinskaya A. I. 1999. — Foregut anatomy of the Cochlespirinae (Gastropoda. Conoidea. Turridae). Zoosystema2\ (2): 171-198. ABSTRACT The foregut anatomy of 20 species, belonging to eight genera, of the sub family Cochlespirinae is described. A cladistic analysis based on several most important characters (morphology of proboscis, position of buccal sphinc ters, histology of venom gland, position of the venom gland opening, struc ture of muscular bulb, and morphology of radular teeth) revealed three more or less well-defined groups within the subfamily. The main feature characte rizing the subfamily as a whole and separating groups within it, appeared to be the structure of venom gland and its muscular bulb. The subgenus KEYWORDS Cochlespirinae, Sibogasyrinx of the genus Leucosyrinx was shown to deserve a genus status. Conoidea, Some genera appeared to be intermediate between Cochlespirinae and anatomy, foregut, Crassispirinae in some anatomical characters, and their taxonomic position histology. remains not completely clear. RESUME L'anatomie du système digestif des Cochlespirinae (Gastropoda, Conoidea, Turridae). L'anatomie du système digestif de 20 espèces, appartenant à huit genres de la sous-famille Cochlespirinae, est étudiée. Une analyse cladistique, fondée sur les plus importants caractères de ce groupe (la morphologie de la trompe, la disposition des sphincters, l'histologie de la glande à venin, la disposition de l'ouverture de la glande à venin, la structure de la poire musculaire et la mor phologie des dents de la radula) a permis de distinguet trois groupes plus ou moins homogènes. -
An Updated Checklist of the Scaleworm Harmothoe (Annelida, Polynoidae) from South America, with Two New Records from Brazil
An updated checklist of the scaleworm Harmothoe (Annelida, Polynoidae) from South America, with two new records from Brazil JOSÉ ERIBERTO DE ASSIS1, 3,*, THAÍS KANANDA DA SILVA SOUZA3, JOSÉ ROBERTO BOTELHO DE SOUZA2 & MARTIN LINDSEY CHRISTOFFERSEN3 1 Departamento de Educação Básica, Prefeitura Municipal de Bayeux, Rua Santa Tereza, CEP 58306-070, Bayeux, Paraíba. 2 Departamento de Zoologia, Centro Biociências – UFPE. Av. Prof. Morais Rego, 1235, Recife, Pernambuco, Brasil. CEP: 50670–901. 3 Laboratório e Coleção de Invertebrados Paulo Young, Departamento de Sistemática e Ecologia, Centro de Ciências Exatas e da Natureza, Universidade Federal da Paraíba, 58059–900, João Pessoa, Paraíba, Brasil. * Corresponding author: [email protected] ----------------------------------------------------------------------------------------------------------------------- ORCIDs JEDA: https://orcid.org/0000-0002-1522-2904 TKDSS: https://orcid.org/0000-0002-4518-0864 JRBDS: https://orcid.org/0000-0002-0144-3992 MLC: https://orcid.org/0000-0001-8108-1938 ----------------------------------------------------------------------------------------------------------------------- Abstract. The family Polynoidae includes a group of scale worms which is abundant in several marine environments, and many members are associated with other invertebrates. The genus Harmothoe is one of the largest in number of species within the polynoids, with more than 150 described species. We summarize in a checklist information relative to 23 nominal species of Harmothoe from South America, with valid names, synonyms and original citations, discuss possible taxonomic problems, and provide illustrations of specimens from the northeastern coast of Brazil. Redescriptions of two species based on new specimens collected along the littoral of the State of Pernambuco, northeastern Brazil, are included. Harmotthoe fuscapinae and Harmothoe lanceocirrata are reported for the first time for Brazilian waters. Key words: Scale worms, polynoids; South Atlantic, new records. -
Benthic Data Sheet
DEMERSAL OTTER/BEAM TRAWL DATA SHEET RESEARCH VESSEL_____________________(1/20/13 Version*) CLASS__________________;DATE_____________;NAME:___________________________; DEVICE DETAILS_________ LOCATION (OVERBOARD): LAT_______________________; LONG______________________________ LOCATION (AT DEPTH): LAT_______________________; LONG_____________________________; DEPTH___________ LOCATION (START UP): LAT_______________________; LONG______________________________;.DEPTH__________ LOCATION (ONBOARD): LAT_______________________; LONG______________________________ TIME: IN______AT DEPTH_______START UP_______SURFACE_______.DURATION OF TRAWL________; SHIP SPEED__________; WEATHER__________________; SEA STATE__________________; AIR TEMP______________ SURFACE TEMP__________; PHYS. OCE. NOTES______________________; NOTES_______________________________ INVERTEBRATES Phylum Porifera Order Pennatulacea (sea pens) Class Calcarea __________________________________ Family Stachyptilidae Class Demospongiae (Vase sponge) _________________ Stachyptilum superbum_____________________ Class Hexactinellida (Hyalospongia- glass sponge) Suborder Subsessiliflorae Subclass Hexasterophora Family Pennatulidae Order Hexactinosida Ptilosarcus gurneyi________________________ Family Aphrocallistidae Family Virgulariidae Aphrocallistes vastus ______________________ Acanthoptilum sp. ________________________ Other__________________________________________ Stylatula elongata_________________________ Phylum Cnidaria (Coelenterata) Virgularia sp.____________________________ Other_______________________________________