Laboratory Diagnosis of Galactosemia: a Technical Standard and Guideline of the American College of Medical Genetics and Genomics (ACMG)

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Laboratory Diagnosis of Galactosemia: a Technical Standard and Guideline of the American College of Medical Genetics and Genomics (ACMG) © American College of Medical Genetics and Genomics ACMG STANDARDS AND GUIDELINES Laboratory diagnosis of galactosemia: a technical standard and guideline of the American College of Medical Genetics and Genomics (ACMG) Marzia Pasquali, PhD1, Chunli Yu, MD2 and Bradford Coffee, PhD3; on behalf of the ACMG Laboratory Quality Assurance Committee Disclaimer: These ACMG Standards and Guidelines are developed primarily as an educational resource for clinical laboratory geneticists to help them provide quality clinical laboratory genetic services. Adherence to these Standards and Guidelines is voluntary and does not necessarily assure a successful medical outcome. These Standards and Guidelines should not be considered inclusive of all proper procedures and tests or exclusive of other procedures and tests that are reasonably directed to obtaining the same results. In determining the propriety of any specific procedure or test, the clinical laboratory geneticist should apply his or her own professional judgment to the specific circumstances presented by the individual patient or specimen. Clinical laboratory geneticists are encouraged to document in the patient’s record the rationale for the use of a particular procedure or test, whether or not it is in conformance with these Standards and Guidelines. They also are advised to take notice of the date any particular guideline was adopted, and to consider other relevant medical and scientific information that becomes available after that date. It also would be prudent to consider whether intellectual property interests may restrict the performance of certain tests and other procedures. Galactosemias are inherited disorders of galactose metabolism deficiency and UDP-galactose-4′-epimerase deficiency is not due to deficiency in one of the three enzymes involved in the Leloir universal. Early identification and treatment of galactosemia pathway: galactose-1-phosphate uridyltransferase, galactokinase, leads to improved outcome. This document reviews the and uridine diphosphate (UDP)-galactose-4′-epimerase. laboratory methods and best practices for the diagnosis of Galactose-1-phosphate uridyltransferase deficiency, or classic galactosemia. galactosemia, is the most frequent and the most severe of the three enzyme deficiencies; it is characterized by failure to Genet Med advance online publication 26 October 2017 thrive, liver failure, susceptibility to sepsis, and death, if untreated. Key Words: enzyme assay; galactokinase; galactose-1-phosphate Newborn screening for classic galactosemia has been implemented 0 in all of the United States, while screening for galactokinase uridyltransferase; galactosemia; UDP-galactose-4 -epimerase METHODS the literature provided conflicting evidence about a topic or This laboratory technical standard and guideline was when there was insufficient evidence, the authors used expert informed by a review of the literature, including any current opinion to inform the recommendations. Expert opinion guidelines, and expert opinion. Resources consulted included included the coauthors of the document, as well as any experts PubMed (search terms: galactosemia, galactose-1-phosphate consulted outside the workgroup and acknowledged in this uridyltransferase, galactokinase, galactose epimerase, galac- document. Any conflicts of interest for workgroup members tose-1-phosphate, Duarte variant), the American College or consultants are listed. The ACMG Laboratory Quality of Medical Genetics and Genomics (ACMG) Technical Assurance Committee (Lab QA) reviewed the document Standards and Guidelines for Clinical Genetics Laboratories, providing further input on the content, and a final draft was Clinical and Laboratory Standards Institute guidelines, CLIA delivered to the ACMG Board of Directors for review and regulations, and the Centers for Disease Control and approval to send out for member comment. The final draft of Prevention’s Morbidity and Mortality Weekly Report on Good the document was uploaded to the ACMG website and an Laboratory Practices for Biochemical Genetics Testing and e-mail link was sent to ACMG members inviting all to Newborn Screening for Inherited Metabolic Disorders. When provide comment. All members’ comments were assessed by 1University of Utah School of Medicine and ARUP Laboratories, Salt Lake City, Utah, USA; 2Mount Sinai Genetic Testing Laboratory, Icahn School of Medicine at Mount Sinai, New York, New York, USA; 3Myriad Genetics, Salt Lake City, Utah, USA. Correspondence: Marzia Pasquali ([email protected]) The Board of Directors of the American College of Medical Genetics and Genomics approved this guideline on 22 May 2017. Submitted 30 August 2017; accepted 30 August 2017; advance online publication 26 October 2017. doi:10.1038/gim.2017.172 GENETICS in MEDICINE | Volume 20 | Number 1 | January 2018 3 ACMG STANDARDS AND GUIDELINES PASQUALI et al | Laboratory diagnosis of galactosemia CO2 + Xylulose DIET Galactitol Galactonate Lactose galactose aldose dehydrogenase reductase NADP+ NADPH NADH NAD+ galactokinase (GALK) Galactose Gal-1-P Endogenous production ATP ADP UDPGlu galactose-1-phosphate uridyl transferase (GALT) Glu-1-P UDPGlu UDPGal uridine diphosphate galactose-4-epimerase (GALE) Figure 1 Metabolism of galactose. Galactose, deriving from diet and, in minor part, from endogenous synthesis, is phosphorylated to galactose-1- phosphate (Gal-1-P) by galactokinase, the first enzyme in the Leloir pathway. Uridine diphosphate (UDP)-galactose is produced from Gal-1-P and UDP- glucose through the enzyme galactose-1-phosphate uridyltransferase. UDP-galactose is then converted to UDP-glucose by the enzyme uridine diphosphate galactose-4-epimerase. UDP-glucose is recycled back into the pathway. the authors and additional evidence was included; our this referral source. Newborn screening for classic galactose- recommendations were amended as deemed appropriate. mia identifies patients with decreased GALT activity in dried Member comments and author responses were reviewed by a blood spots (DBS) and, for some states, elevated galactose representative of the Lab QA committee and the ACMG sugars. States including galactose sugars as part of their Board. The final document was approved by the ACMG screening also identify cases of GALK and GALE deficiencies, Board of Directors. while those relying only on galactose sugars alone may miss cases of GALT deficiency in patients on a galactose-limited OVERVIEW diet. Galactosemia testing may also be initiated by a positive Galactosemia encompasses three distinct enzymatic deficien- family history, or by nonspecific features of the disease in an cies in the Leloir pathway of galactose metabolism (Figure 1). older patient. Although diagnostic testing is relatively This pathway plays a critical role in converting D-galactose straightforward, significant variability can result from pre- to glucose-1-phoshate for entry into glycolysis, as well as analytic and analytic influences if not properly controlled. supplying uridine diphosphate galactose (UDP-galactose) for These guidelines were developed to delineate best practices for the galactosylation of carbohydrates and lipids. Classic enzyme and metabolite testing for galactosemia and to galactosemia (MIM 230400) is caused by deficient galactose- characterize variables that can influence test performance 1-phosphate uridyltransferase (GALT) activity, leading to and results interpretation. elevated galactose-1-phosphate (Gal-1-P) and other galactose metabolites in blood and urine. A variant form of galacto- semia, referred to as Duarte variant or DG galactosemia, is BACKGROUND characterized by approximately 25% of normal GALT activity Biochemical and molecular characteristics of galactose- and may be clinically benign.1 Galactokinase (GALK) metabolizing enzymes deficiency and UDP-galactose-4′-epimerase (GALE) defi- Galactose-1-phosphate uridyltransferase ciency are clinically and biochemically distinct from classic Galactose-1-phosphate uridyltransferase (GALT; EC 2.7.7.12), galactosemia. For each of these conditions, the diagnosis is the second enzyme of the Leloir pathway, is a member of the based on the demonstration of severely reduced or absent histidine triad superfamily and is a homodimer composed of enzyme activity in red blood cells (RBCs). DNA analysis of two 43-kDa subunits.2 This enzyme catalyzes the interconver- the GALT, GALK1,orGALE genes is often performed as part sion of Gal-1-P to glucose-1-phosphate, with the concomitant of the diagnostic evaluation. interconversion of the co-substrate UDP-glucose to UDP- Because galactosemia is included in all newborn screening galactose. The reaction follows a “ping-pong” mechanism programs in the United States and many other countries whereby histidine at the active site reacts with UDP-glucose worldwide, the majority of diagnostic testing originates from loading the enzyme with uridine 5′-monophosphate (UMP); 4 Volume 20 | Number 1 | January 2018 | GENETICS in MEDICINE Laboratory diagnosis of galactosemia | PASQUALI et al ACMG STANDARDS AND GUIDELINES UMP then reacts with galactose-1-phosphate, forming the Gal-1-P.14 It is encoded by GALK1, a gene spanning 8 exons final product, UDP-galactose.3 and 7.3 kb on chromosome 17q25.1.15 Deficiency of GALK The GALT gene encompasses 11 exons spanning 4.3 kb of results in type II galactosemia or galactokinase deficiency chromosome 9p13. An open-access database has curated (MIM 230200). Several GALK pathogenic variants have been more than 250 pathogenic variants including
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