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Adaptive Radiations: from Field to Genomic Studies
Adaptive radiations: From field to genomic studies Scott A. Hodges and Nathan J. Derieg1 Department of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, CA 93106 Adaptive radiations were central to Darwin’s formation of his phenotype–environment correlation, (iii) trait utility, and (iv) theory of natural selection, and today they are still the centerpiece rapid speciation. Monophyly and rapid speciation for many of for many studies of adaptation and speciation. Here, we review the the classic examples of adaptive radiation have been established advantages of adaptive radiations, especially recent ones, for by using molecular techniques [e.g., cichlids (4), Galapagos detecting evolutionary trends and the genetic dissection of adap- finches (5, 6), and Hawaiian silverswords (7)]. Ecological and tive traits. We focus on Aquilegia as a primary example of these manipulative experiments are used to identify and test pheno- advantages and highlight progress in understanding the genetic type–environmental correlations and trait utility. Ultimately, basis of flower color. Phylogenetic analysis of Aquilegia indicates such studies have pointed to the link between divergent natural that flower color transitions proceed by changes in the types of selection and reproductive isolation and, thus, speciation (3). anthocyanin pigments produced or their complete loss. Biochem- Studies of adaptive radiations have exploded during the last 20 ical, crossing, and gene expression studies have provided a wealth years. In a search of the ISI Web of Science with ‘‘adaptive of information about the genetic basis of these transitions in radiation’’ (limited to the subject area of evolutionary biology) Aquilegia. To obtain both enzymatic and regulatory candidate we found 80 articles published in 2008 compared with only 1 in genes for the entire flavonoid pathway, which produces antho- 1990. -
Extended Phylogeny of Aquilegia: the Biogeographical and Ecological Patterns of Two Simultaneous but Contrasting Radiations
Plant Syst Evol (2010) 284:171–185 DOI 10.1007/s00606-009-0243-z ORIGINAL ARTICLE Extended phylogeny of Aquilegia: the biogeographical and ecological patterns of two simultaneous but contrasting radiations Jesu´s M. Bastida • Julio M. Alca´ntara • Pedro J. Rey • Pablo Vargas • Carlos M. Herrera Received: 29 April 2009 / Accepted: 25 October 2009 / Published online: 4 December 2009 Ó Springer-Verlag 2009 Abstract Studies of the North American columbines respective lineages. The genus originated between 6.18 (Aquilegia, Ranunculaceae) have supported the view that and 6.57 million years (Myr) ago, with the main pulses of adaptive radiations in animal-pollinated plants proceed diversification starting around 3 Myr ago both in Europe through pollinator specialisation and floral differentiation. (1.25–3.96 Myr ago) and North America (1.42–5.01 Myr However, although the diversity of pollinators and floral ago). The type of habitat occupied shifted more often in morphology is much lower in Europe and Asia than in the Euroasiatic lineage, while pollination vectors shifted North America, the number of columbine species is more often in the Asiatic-North American lineage. similar in the three continents. This supports the Moreover, while allopatric speciation predominated in the hypothesis that habitat and pollinator specialisation have European lineage, sympatric speciation acted in the North contributed differently to the radiation of columbines in American one. In conclusion, the radiation of columbines different continents. To establish the basic background to in Europe and North America involved similar rates of test this hypothesis, we expanded the molecular phylog- diversification and took place simultaneously and inde- eny of the genus to include a representative set of species pendently. -
Southwestern Rare and Endangered Plants: Proceedings of the Fourth
Conservation Implications of Spur Length Variation in Long-Spur Columbines (Aquilegia longissima) CHRISTOPHER J. STUBBEN AND BROOK G. MILLIGAN Department of Biology, New Mexico State University, Las Cruces, New Mexico 88003 ABSTRACT: Populations of long-spur columbine (Aquilegia longissima) with spurs 10-16 cm long are known only from a few populations in Texas, a historical collection near Baboquivari Peak, Arizona, and scattered populations in Coahuila, Chihuahua, and Nuevo Leon, Mexico. Populations of yellow columbine with spurs 7-10 cm long are also found in Arizona, Texas, and Mexico, and are now classified as A. longissima in the recent Flora of North America. In a multivariate analysis of floral characters from 11 yellow columbine populations representing a continuous range of spur lengths, populations with spurs 10-16 cm long are clearly separate from other populations based on increasing spur length and decreasing petal and sepal width. The longer-spurred columbines generally flower after monsoon rains in late summer or fall, and occur in intermittently wet canyons and steep slopes in pine-oak forests. Also, longer-spurred flowers can be pollinated by large hawkmoths with tongues 9-15 cm long. Populations with spurs 7-10 cm long cluster with the common golden columbine (A. chrysantha), and may be the result of hybridization between A. chrysantha and A. longissima. Uncertainty about the taxonomic status of intermediates has contributed to a lack of conservation efforts for declining populations of the long-spur columbine. The genus Aquilegia is characterized are difficult to identify accurately in by a wide diversity of floral plant keys. For example, floral spurs morphologies and colors that play a lengths are a key character used to major role in isolating two species via differentiate yellow columbine species in differences in pollinator visitation or the Southwest. -
Lantern Slides Illustrating Zoology, Botany, Geology, Astronomy
CATALOGUES ISSUED! A—Microscope Slides. B—Microscopes and Accessories. C—Collecting Apparatus D—Models, Specimens and Diagrams— Botanical, Zoological, Geological. E—Lantfrn Slides (Chiefly Natural History). F—Optical Lanterns and Accessories. S—Chemicals, Stains and Reagents. T—Physical and Chemical Apparatus (Id Preparation). U—Photographic Apparatus and Materials. FLATTERS & GARNETT Ltd. 309 OXFORD ROAD - MANCHESTER Fourth Edition November, 1924 This Catalogue cancels all previous issues LANTERN SLIDES illustrating Zoology Birds, Insects and Plants Botany in Nature Geology Plant Associations Astronomy Protective Resemblance Textile Fibres Pond Life and Sea and Shore Life Machinery Prepared by FLATTERS k GARNETT, LTD Telephone : 309 Oxford Road CITY 6533 {opposite the University) Telegrams : ” “ Slides, Manchester MANCHESTER Hours of Business: 9 a.m. to 6 p.m. Saturdays 1 o’clock Other times by appointment CATALOGUE “E” 1924. Cancelling all Previous Issues Note to Fourth Edition. In presenting this New Edition we wish to point out to our clients that our entire collection of Negatives has been re-arranged and we have removed from the Catalogue such slides as appeared to be redundant, and also those for which there is little demand. Several new Sections have been added, and, in many cases, old photographs have been replaced by better ones. STOCK SLIDES. Although we hold large stocks of plain slides it frequently happens during the busy Season that particular slides desired have to be made after receipt of the order. Good notice should, therefore, be given. TONED SLIDES.—Most stock slides may be had toned an artistic shade of brown at an extra cost of 6d. -
Perennial 2018 Report
2018 Perennial Trial Evaluation Department of Horticulture and Landscape Architecture, Colorado State University Scientific Name Acanthus longifolius Source Denver Botanic Gardens Common Name Bear's Breech Tsnum: 96147 Variety Bed: B Cultivar Family Acanthaceae Plant Type: Herbaceous perennial Plant Habit: Upright spreading clump Plant Quality: Good Foliage Color: Medium green Plant Height: 10 inches Plant Width: Around 4 feet Cultural Problems: Nuisances: Insect Problems: Disease Problems: Landscape Uses: Specimen, border Flower Effectiveness: Good Flower Color: Mauve and greenish white Flower Size: Inflorescence up to 10 inches in size Flower Height: Up to 4 feet Flower Effectiveness: Good Comments on plant: 3/8 5/18 budding 6/7 70 7/5 100 8/2 100 9/12 10/3 3/20 5/22 Hailstor 6/20 100 7/18 100 8/15 100 9/26 10/17 4/4 8/29 60 4/22 budding Page 1 of 1013 2018 Perennial Trial Evaluation Department of Horticulture and Landscape Architecture, Colorado State University Scientific Name Achillea Source Blooms of Bressingham Common Name Hybrid Yarrow Tsnum: 09141 Variety Bed: GB Cultivar 507 Family Asteraceae Plant Type: Herbaceous Plant Habit: Upright Plant Quality: Good Foliage Color: Medium Green Plant Height: 8-10 inches Plant Width: About 1 foot Cultural Problems: Nuisances: Insect Problems: Disease Problems: Landscape Uses: Border, mass, cut flowers fresh or dried Flower Effectiveness: Good Flower Color: Light Peach to Pink Flower Size: clusters up to 5 inches Flower Height: Up to 2 feet Flower Effectiveness: Good Comments on plant: 3/8 -
A Natural Resource Condition Assessment for Sequoia and Kings Canyon National Parks Appendix 14 – Plants of Conservation Concern
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science A Natural Resource Condition Assessment for Sequoia and Kings Canyon National Parks Appendix 14 – Plants of Conservation Concern Natural Resource Report NPS/SEKI/ NRR—2013/665.14 In Memory of Rebecca Ciresa Wenk, Botaness ON THE COVER Giant Forest, Sequoia National Park Photography by: Brent Paull A Natural Resource Condition Assessment for Sequoia and Kings Canyon National Parks Appendix 14 – Plants of Conservation Concern Natural Resource Report NPS/SEKI/ NRR—2013/665.14 Ann Huber University of California Berkeley 41043 Grouse Drive Three Rivers, CA 93271 Adrian Das U.S. Geological Survey Western Ecological Research Center, Sequoia-Kings Canyon Field Station 47050 Generals Highway #4 Three Rivers, CA 93271 Rebecca Wenk University of California Berkeley 137 Mulford Hall Berkeley, CA 94720-3114 Sylvia Haultain Sequoia and Kings Canyon National Parks 47050 Generals Highway Three Rivers, CA 93271 June 2013 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate high-priority, current natural resource management information with managerial application. The series targets a general, diverse audience, and may contain NPS policy considerations or address sensitive issues of management applicability. -
A Legacy of Plants N His Short Life, Douglas Created a Tremendous Legacy in the Plants That He Intro (P Coulteri) Pines
The American lIorHcullural Sociely inviles you Io Celehrate tbe American Gardener al our 1999 Annual Conference Roston" Massachusetts June 9 - June 12~ 1999 Celebrate Ute accompHsbenls of American gardeners in Ute hlsloric "Cay Upon lhe 1Iill." Join wah avid gardeners from. across Ute counlrg lo learn new ideas for gardening excellence. Attend informa-Hve ledures and demonslraHons by naHonally-known garden experts. Tour lhe greal public and privale gardens in and around Roslon, including Ute Arnold Arborelum and Garden in Ute Woods. Meet lhe winners of AIlS's 1999 naHonJ awards for excellence in horHcullure. @ tor more informaHon, call1he conference regislrar al (800) 777-7931 ext 10. co n t e n t s Volume 78, Number 1 • '.I " Commentary 4 Hellebores 22 Members' Forum 5 by C. Colston Burrell Staghorn fern) ethical plant collecting) orchids. These early-blooming pennnials are riding the crest of a wave ofpopularity) and hybridizers are News from AHS 7 busy working to meet the demand. Oklahoma Horticultural Society) Richard Lighty) Robert E. Lyons) Grecian foxglove. David Douglas 30 by Susan Davis Price Focus 9 Many familiar plants in cultivation today New plants for 1999. are improved selections of North American species Offshoots 14 found by this 19th-century Scottish expLorer. Waiting for spring in Vermont. Bold Plants 37 Gardeners Information Service 15 by Pam Baggett Houseplants) transplanting a ginkgo tree) Incorporating a few plants with height) imposing starting trees from seed) propagating grape vines. foliage) or striking blossoms can make a dramatic difference in any landscape design. Mail-Order Explorer 16 Heirloom flowers and vegetables. -
Fragrant Annuals Fragrant Annuals
TheThe AmericanAmerican GARDENERGARDENER® TheThe MagazineMagazine ofof thethe AAmericanmerican HorticulturalHorticultural SocietySociety JanuaryJanuary // FebruaryFebruary 20112011 New Plants for 2011 Unusual Trees with Garden Potential The AHS’s River Farm: A Center of Horticulture Fragrant Annuals Legacies assume many forms hether making estate plans, considering W year-end giving, honoring a loved one or planting a tree, the legacies of tomorrow are created today. Please remember the American Horticultural Society when making your estate and charitable giving plans. Together we can leave a legacy of a greener, healthier, more beautiful America. For more information on including the AHS in your estate planning and charitable giving, or to make a gift to honor or remember a loved one, please contact Courtney Capstack at (703) 768-5700 ext. 127. Making America a Nation of Gardeners, a Land of Gardens contents Volume 90, Number 1 . January / February 2011 FEATURES DEPARTMENTS 5 NOTES FROM RIVER FARM 6 MEMBERS’ FORUM 8 NEWS FROM THE AHS 2011 Seed Exchange catalog online for AHS members, new AHS Travel Study Program destinations, AHS forms partnership with Northeast garden symposium, registration open for 10th annual America in Bloom Contest, 2011 EPCOT International Flower & Garden Festival, Colonial Williamsburg Garden Symposium, TGOA-MGCA garden photography competition opens. 40 GARDEN SOLUTIONS Plant expert Scott Aker offers a holistic approach to solving common problems. 42 HOMEGROWN HARVEST page 28 Easy-to-grow parsley. 44 GARDENER’S NOTEBOOK Enlightened ways to NEW PLANTS FOR 2011 BY JANE BERGER 12 control powdery mildew, Edible, compact, upright, and colorful are the themes of this beating bugs with plant year’s new plant introductions. -
POPOVICH, Encoding a C2H2 Zinc-Finger Transcription Factor, Plays
POPOVICH, encoding a C2H2 zinc-finger transcription factor, plays a central role in the development of a key innovation, floral nectar spurs, in Aquilegia Evangeline S. Ballerinia,1,2 , Ya Minb , Molly B. Edwardsb, Elena M. Kramerb , and Scott A. Hodgesa,1 aEcology, Evolution and Marine Biology Department, University of California, Santa Barbara, CA 93106; and bDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02318 Edited by Dominique C. Bergmann, Stanford University, Stanford, CA, and approved July 30, 2020 (received for review April 11, 2020) The evolution of novel features, such as eyes or wings, that allow traits, such as the powered flight of insects, birds, and bats, or organisms to exploit their environment in new ways can lead the pharyngeal jaws of cichlid fish, is recognized as contribut- to increased diversification rates. Therefore, understanding the ing to lineage diversification (13–15), discovering the genetic genetic and developmental mechanisms involved in the origin and developmental mechanisms that led to their evolution is of these key innovations has long been of interest to evolution- often difficult, in part, because many of these traits involve com- ary biologists. In flowering plants, floral nectar spurs are a prime plex developmental mechanisms that arose deep in evolutionary example of a key innovation, with the independent evolution of history. Given that the Aquilegia nectar spur evolved relatively spurs associated with increased diversification rates in multiple recently and is formed by modifications to a single floral organ, angiosperm lineages due to their ability to promote reproductive it provides a unique opportunity to begin to dissect the develop- isolation via pollinator specialization. -
Annotated Checklist of the Vascular Plant Flora of Grand Canyon-Parashant National Monument Phase II Report
Annotated Checklist of the Vascular Plant Flora of Grand Canyon-Parashant National Monument Phase II Report By Dr. Terri Hildebrand Southern Utah University, Cedar City, UT and Dr. Walter Fertig Moenave Botanical Consulting, Kanab, UT Colorado Plateau Cooperative Ecosystems Studies Unit Agreement # H1200-09-0005 1 May 2012 Prepared for Grand Canyon-Parashant National Monument Southern Utah University National Park Service Mojave Network TABLE OF CONTENTS Page # Introduction . 4 Study Area . 6 History and Setting . 6 Geology and Associated Ecoregions . 6 Soils and Climate . 7 Vegetation . 10 Previous Botanical Studies . 11 Methods . 17 Results . 21 Discussion . 28 Conclusions . 32 Acknowledgments . 33 Literature Cited . 34 Figures Figure 1. Location of Grand Canyon-Parashant National Monument in northern Arizona . 5 Figure 2. Ecoregions and 2010-2011 collection sites in Grand Canyon-Parashant National Monument in northern Arizona . 8 Figure 3. Soil types and 2010-2011 collection sites in Grand Canyon-Parashant National Monument in northern Arizona . 9 Figure 4. Increase in the number of plant taxa confirmed as present in Grand Canyon- Parashant National Monument by decade, 1900-2011 . 13 Figure 5. Southern Utah University students enrolled in the 2010 Plant Anatomy and Diversity course that collected during the 30 August 2010 experiential learning event . 18 Figure 6. 2010-2011 collection sites and transportation routes in Grand Canyon-Parashant National Monument in northern Arizona . 22 2 TABLE OF CONTENTS Page # Tables Table 1. Chronology of plant-collecting efforts at Grand Canyon-Parashant National Monument . 14 Table 2. Data fields in the annotated checklist of the flora of Grand Canyon-Parashant National Monument (Appendices A, B, C, and D) . -
A Chromosome-Scale Reference Genome of Aquilegia Oxysepala Var
Xie et al. Horticulture Research (2020) 7:113 Horticulture Research https://doi.org/10.1038/s41438-020-0328-y www.nature.com/hortres ARTICLE Open Access A chromosome-scale reference genome of Aquilegia oxysepala var. kansuensis Jinghe Xie1,2, Haifeng Zhao1,2, Kunpeng Li1,2, Rui Zhang1, Yongchao Jiang1,MeimeiWang1,2, Xuelian Guo1,BenYu1,2, Hongzhi Kong 1,2, Yuannian Jiao 1,2 and Guixia Xu 1,2 Abstract The genus Aquilegia (Ranunculaceae) has been cultivated as ornamental and medicinal plants for centuries. With petal spurs of strikingly diverse size and shape, Aquilegia has also been recognized as an excellent system for evolutionary studies. Pollinator‐mediated selection for longer spurs is believed to have shaped the evolution of this genus, especially the North American taxa. Recently, however, an opposite evolutionary trend was reported in an Asian lineage, where multiple origins of mini- or even nonspurred morphs have occurred. Interesting as it is, the lack of genomic resources has limited our ability to decipher the molecular and evolutionary mechanisms underlying spur reduction in this special lineage. Using long-read sequencing (PacBio Sequel), in combination with optical maps (BioNano DLS) and Hi–C, we assembled a high-quality reference genome of A. oxysepala var. kansuensis, a sister species to the nonspurred taxon. The final assembly is approximately 293.2 Mb, 94.6% (277.4 Mb) of which has been anchored to 7 pseudochromosomes. A total of 25,571 protein-coding genes were predicted, with 97.2% being functionally annotated. When comparing this genome with that of A. coerulea, we detected a large rearrangement between Chr1 and Chr4, which might have caused the Chr4 of A. -
Metabolomic Profiling of the Nectars of Aquilegia Pubescens and A. Canadensis Christos Noutsos Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
Biochemistry, Biophysics and Molecular Biology Biochemistry, Biophysics and Molecular Biology Publications 2015 Metabolomic Profiling of the Nectars of Aquilegia pubescens and A. Canadensis Christos Noutsos Cold Spring Harbor Laboratory, Cold Spring Harbor, New York Ann Perera Iowa State University, [email protected] Basil Nikolau Iowa State University, [email protected] Samuel M.D. Seaver Argonne National Laboratory Doreen Ware Cold Spring Harbor Laboratory Follow this and additional works at: http://lib.dr.iastate.edu/bbmb_ag_pubs Part of the Biochemistry, Biophysics, and Structural Biology Commons The ompc lete bibliographic information for this item can be found at http://lib.dr.iastate.edu/ bbmb_ag_pubs/54. For information on how to cite this item, please visit http://lib.dr.iastate.edu/ howtocite.html. This Article is brought to you for free and open access by the Biochemistry, Biophysics and Molecular Biology at Iowa State University Digital Repository. It has been accepted for inclusion in Biochemistry, Biophysics and Molecular Biology Publications by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Metabolomic Profiling of the Nectars of Aquilegia pubescens and A. Canadensis Abstract To date, variation in nectar chemistry of flowering plants has not been studied in detail. Such variation exerts considerable influence on pollinator–plant interactions, as well as on flower traits that play important roles in the selection of a plant for visitation by specific pollinators. Over the past 60 years the Aquilegia genus has been used as a key model for speciation studies. In this study, we defined the metabolomic profiles of flower samples of two Aquilegia species, A.