Cabiles C. D., Soliman V. S., 2019 Reproduction-Temperature Nexus Influencing Spawning of Pectinids in Tropical and Temperate Waters
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Analysis of Synonymous Codon Usage Patterns in Sixty-Four Different Bivalve Species
Analysis of synonymous codon usage patterns in sixty-four diVerent bivalve species Marco Gerdol1, Gianluca De Moro1, Paola Venier2 and Alberto Pallavicini1 1 Department of Life Sciences, University of Trieste, Trieste, Italy 2 Department of Biology, University of Padova, Padova, Italy ABSTRACT Synonymous codon usage bias (CUB) is a defined as the non-random usage of codons encoding the same amino acid across diVerent genomes. This phenomenon is common to all organisms and the real weight of the many factors involved in its shaping still remains to be fully determined. So far, relatively little attention has been put in the analysis of CUB in bivalve mollusks due to the limited genomic data available. Taking advantage of the massive sequence data generated from next generation sequencing projects, we explored codon preferences in 64 diVerent species pertaining to the six major evolutionary lineages in Bivalvia. We detected remarkable diVerences across species, which are only partially dependent on phylogeny. While the intensity of CUB is mild in most organisms, a heterogeneous group of species (including Arcida and Mytilida, among the others) display higher bias and a strong preference for AT-ending codons. We show that the relative strength and direction of mutational bias, selection for translational eYciency and for translational accuracy contribute to the establishment of synonymous codon usage in bivalves. Although many aspects underlying bivalve CUB still remain obscure, we provide for the first time an overview of this phenomenon -
From the Indonesian Archipelago
A contribution to the knowledge of the pectinacean Mollusca (Bivalvia: Propeamussiidae, Entoliidae, Pectinidae) from the Indonesian Archipelago H.H. Dijkstra Dijkstra, H.H. A contribution to the knowledge of the pectinacean Mollusca (Bivalvia: Propea- mussiidae, Entoliidae, Pectinidae) from the Indonesian Archipelago. Zool. Verh. Leiden 271, 24.xii.l991: l-57, figs. 1-94, 1 table. — ISSN 0024-1652. Key words: Mollusca; Bivalvia; Propeamussiidae; Entoliidae; Pectinidae; taxonomy; Indonesia. Abstract: During the Indonesian-Dutch SNELLIUS -II Expedition (1984-1985) to the Indonesian Archipelago 46 pectinacean species were collected from the Flores Sea and Banda Sea (5°52'-9°57'S, 118°12'-123°58'E) at littoral to bathyal depth (835 m). One new pectinid genus, viz. Glorichlamys gen. nov., six new propeamussiids, viz. Parvamussium araneum spec. nov., Parvamussium carbaseum spec. nov., Parvamussium cassium spec. nov., Parvamussium undosum spec. nov., Parvamussium virgatum spec. nov., Cyclopecten cancellus spec. nov., and one new entoliid, viz. Pectinella aequoris spec. nov. are described. Twelve new records of Pectinacea for this region are mentioned. For Ostrea squamosa Gmelin, 1791 a lectotype is designated. In addition Pectinidae of the SNELLIUS-Expedition (1929- 1930) to the eastern region of Indonesia, and material collected by Dr B.W. Hoeksema near Sulawesi (1985, 1986) are reported upon. H.H. Dijkstra, Zoological Museum Amsterdam, P.O. Box 4766, 1009 AT Amsterdam, The Netherlands. Contents Introduction 3 Acknowledgements and abbreviations 5 Systematic part 6 Propeamussiidae 6 Entoliidae 23 Pectinidae 25 References 50 Index 55 Introduction For several centuries already Pectinidae are known from the Indonesian Archi• pelago. These were brought to Europe by explorers and commercial travellers. -
This Is the Peer Reviewed Version of the Following Article: JM Serb, E
ACCEPTED VERSION "This is the peer reviewed version of the following article: J. M. Serb, E. Sherratt, A. Alejandrino & D. C. Adams Phylogenetic convergence and multiple shell shape optima for gliding scallops (Bivalvia: Pectinidae) Journal of Evolutionary Biology, 2017; 30(9):1736-1747 © 2017 European Society for Evolutionary Biology which has been published in final form at https://doi.org/10.1111/jeb.13137 This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Self-Archiving." PERMISSIONS https://authorservices.wiley.com/author-resources/Journal-Authors/licensing-open-access/open- access/self-archiving.html Publishing in a subscription based journal Accepted (peer-reviewed) Version The accepted version of an article is the version that incorporates all amendments made during the peer review process, but prior to the final published version (the Version of Record, which includes; copy and stylistic edits, online and print formatting, citation and other linking, deposit in abstracting and indexing services, and the addition of bibliographic and other material. Self-archiving of the accepted version is subject to an embargo period of 12-24 months. The embargo period is 12 months for scientific, technical, and medical (STM) journals and 24 months for social science and humanities (SSH) journals following publication of the final article. • the author's personal website • the author's company/institutional repository or archive • not for profit subject-based repositories such as PubMed Central Articles may be deposited into repositories on acceptance, but access to the article is subject to the embargo period. Journal of Evolutionary Biology - 12 months embargo The version posted must include the following notice on the first page: "This is the peer reviewed version of the following article: [FULL CITE], which has been published in final form at [Link to final article using the DOI]. -
Os Nomes Galegos Dos Moluscos
A Chave Os nomes galegos dos moluscos 2017 Citación recomendada / Recommended citation: A Chave (2017): Nomes galegos dos moluscos recomendados pola Chave. http://www.achave.gal/wp-content/uploads/achave_osnomesgalegosdos_moluscos.pdf 1 Notas introdutorias O que contén este documento Neste documento fornécense denominacións para as especies de moluscos galegos (e) ou europeos, e tamén para algunhas das especies exóticas máis coñecidas (xeralmente no ámbito divulgativo, por causa do seu interese científico ou económico, ou por seren moi comúns noutras áreas xeográficas). En total, achéganse nomes galegos para 534 especies de moluscos. A estrutura En primeiro lugar preséntase unha clasificación taxonómica que considera as clases, ordes, superfamilias e familias de moluscos. Aquí apúntase, de maneira xeral, os nomes dos moluscos que hai en cada familia. A seguir vén o corpo do documento, onde se indica, especie por especie, alén do nome científico, os nomes galegos e ingleses de cada molusco (nalgún caso, tamén, o nome xenérico para un grupo deles). Ao final inclúese unha listaxe de referencias bibliográficas que foron utilizadas para a elaboración do presente documento. Nalgunhas desas referencias recolléronse ou propuxéronse nomes galegos para os moluscos, quer xenéricos quer específicos. Outras referencias achegan nomes para os moluscos noutras linguas, que tamén foron tidos en conta. Alén diso, inclúense algunhas fontes básicas a respecto da metodoloxía e dos criterios terminolóxicos empregados. 2 Tratamento terminolóxico De modo moi resumido, traballouse nas seguintes liñas e cos seguintes criterios: En primeiro lugar, aprofundouse no acervo lingüístico galego. A respecto dos nomes dos moluscos, a lingua galega é riquísima e dispomos dunha chea de nomes, tanto específicos (que designan un único animal) como xenéricos (que designan varios animais parecidos). -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
On the Cephalopod Phosphagen by Ernest Baldwin, B.A
222 ON THE CEPHALOPOD PHOSPHAGEN BY ERNEST BALDWIN, B.A. (From the Biochemical Laboratory, Cambridge, and the Marine Biological Station, Tamaris, Var, France.) (Received 8th November, 1932.) (With Four Text-figures.) INTRODUCTION. THE comparative researches of Eggleton & Eggleton(s) on the distribution of phosphagen made it clear that while creatine phosphate is very widely distributed amongst the vertebrates, it is not present in the invertebrates. Shortly afterwards, a new phosphagenic substance was isolated from crab muscle by Meyerhof & Lohmann(n, 12) and shown to be arginine phosphate, while the later work of Lundsgaard (9) has made it certain that this compound plays in these tissues a part exactly analogous to that played by the creatine compound in vertebrate muscles. Later, Meyerhof (10) examined a number of invertebrates, representative of several phyla, and came to the conclusion that arginine phosphate is present in Holothuria, Pecten and Sipunculus. Cephalopod muscle contained no phosphagen. The case of the cephalopods was further examined by Needham, Needham, Baldwin & Yudkin (13), who not only found that the muscles of Sepia and of Octopus do contain phosphagen, but were also able to investigate its ontogeny in the former (14). There seemed no reason to think that the compound present was any- thing other than the arginine compound (8). Ackermann, Holtz & Kutscherw claim to have isolated the copper nitrate salt of arginine from extracts of the cephalopod Eledone moschata, while Okuda(is) has made a similar claim in the case of Loligo breekert, whereas Iseki (7) has been able to isolate no arginine from extracts of Octopus, finding in its place a compound which he isolated in the form of its picrate, and which he thinks may be a methyl agmatine. -
Results of the Rumphius Biohistorical Expedition to Ambon (1990)
Results of the Rumphius Biohistorical Expedition to Ambon (1990) Part 6. Mollusca, Bivalvia, Pectinidae H.H. Dijkstra Dijkstra, H.H. Results of the Rumphius Biohistorical Expedition to Ambon (1990). Part 6. Mollusca, Bivalvia, Pectinidae. Zool. Med. Leiden 71 (27), 30.xii.1997: 313-343, figs 1-49, tabs 1-3.— ISSN 0024-0672. Henk H. Dijkstra, Institute of Systematics and Population Biology, University of Amsterdam, Zoolog• ical Museum, Department of Malacology, P.O. Box 94766, 1090 GT Amsterdam, The Netherlands (e- mail: [email protected]). Key words: Rumphius Biohistorical Expedition; Indonesia; Ambon; Mollusca; Bivalvia; Pectinidae. During the Rumphius Biohistorical Expedition (1990) to Ambon 17 Pectinidae species were collected, nine of which were described by Rumphius (1705) and five illustrated by Rumphius. One species, viz. Decatopecten plica (Linnaeus, 1758), illustrated in Rumphius (1705: pi. 44, fig. O), has not been refound. No decisive evidence is found of Rumphius' pectinids kept in either the Gualtieri collection at Calci, or in the Naturhistorisches Museum at Vienna. Introduction During the Rumphius Biohistorical Expedition (4 November 1990 - 14 December 1990) to Ambon (Moluccas, Indonesia) 68 samples of Pectinidae including 17 species were collected from 18 stations in the shallow coastal waters around the island (see table 2). All pectinids mentioned by Rumphius (1705, 1741, 1766), excepting D. plica (Linnaeus, 1758) (fig. 59), were rediscovered by the present expedition. Rumphius (1705) described nine species from the same region. Altogether c. 62 (sub)species of Pectinidae are known from the Indonesian Archipelago (see table 2) from littoral to bathyal depths. Most likely additional pectinid species could be found around Ambon by dredging or trawling in deeper waters. -
FRDC 2006-008 NPF Byproduct Report 31Jan2010 FINAL V2.Dot
Assessing[Title] data poor resources: developing a management strategy for byproduct species in the Northern Prawn Fishery FRDC Project 2006/008 Final Report 31 January 2010 David A. Milton, Gary C. Fry, Petra Kuhnert, Mark Tonks, Shijie Zhou and Min Zhu Title Assessing data poor resources: developing a management strategy for byproduct species in the Northern Prawn Fishery / David Milton ... [et al.]. ISBN: 9781921424519 (hbk.) Notes: Bibliography. Subjects: Northern Prawn Fishery (Australia) Shrimp fisheries—Australia, Northern—Management. Fish stock assessment—Australia, Northern. Other Authors/Contributors: Fry, G. C., Tonks, M. Zhou, S. CSIRO Marine and Atmospheric Research. Kuhnert, P., Zhu, M. CSIRO Mathematical and Information Sciences Fisheries Research and Development Corporation (Australia) Dewey Number 333.95558 Enquiries should be addressed to: Dr D. A. Milton CSIRO Marine and Atmospheric Research PO Box 120, Cleveland Qld 4163 Ph: 07 3826 7241 Fax: 07 3826 7222 [email protected] Distribution list AFMA NPF manager 2 FRDC 5 NORMAC 2 CSIRO MAR Librarian 1 National Library 1 QFRAB 1 Copyright and Disclaimer © 2010 CSIRO and FRDC. To the extent permitted by law, all rights are reserved and no part of this publication covered by copyright may be reproduced or copied in any form or by any means except with the written permission of CSIRO and FRDC. Important Disclaimer CSIRO and FRDC advise that the information contained in this publication comprises general statements based on scientific research. The reader is advised and needs to be aware that such information may be incomplete or unable to be used in any specific situation. No reliance or actions must therefore be made on that information without seeking prior expert professional, scientific and technical advice. -
Assessment of a 35-Mm Square-Mesh Codend Design in the Ocean Prawn
Assessment of a 35-mm square-mesh codend and composite square-mesh panel configuration in the ocean prawn-trawl fishery of northern New South Wales William G. Macbeth, Daniel D. Johnson and Charles A. Gray NSW Department of Primary Industries Cronulla Fisheries Research Centre of Excellence P.O. Box 21, Cronulla, NSW 2230, Australia Northern Rivers Catchment Management Authority Project No. IS7-8-243-06 July 2008 NSW Department of Primary Industries – Fisheries Final Report Series No. 103 ISSN 1449-9967 Assessment of a 35-mm square-mesh codend and composite square-mesh panel configuration in the ocean prawn- trawl fishery of northern New South Wales July 2008 Authors: Macbeth, W.G., Johnson, D.D. and Gray, C.A. Published By: NSW Department of Primary Industries (now incorporating NSW Fisheries) Postal Address: Cronulla Fisheries Research Centre of Excellence, PO Box 21, NSW, 2230 Internet: www.dpi.nsw.gov.au © NSW Department of Primary Industries and the Northern Rivers Catchment Management Authority This work is copyright. Except as permitted under the Copyright Act, no part of this reproduction may be reproduced by any process, electronic or otherwise, without the specific written permission of the copyright owners. Neither may information be stored electronically in any form whatsoever without such permission. DISCLAIMER The publishers do not warrant that the information in this report is free from errors or omissions. The publishers do not accept any form of liability, be it contractual, tortuous or otherwise, for the contents of this report for any consequences arising from its use or any reliance placed on it. -
Benthic Habitats and Biodiversity of Dampier and Montebello Marine
CSIRO OCEANS & ATMOSPHERE Benthic habitats and biodiversity of the Dampier and Montebello Australian Marine Parks Edited by: John Keesing, CSIRO Oceans and Atmosphere Research March 2019 ISBN 978-1-4863-1225-2 Print 978-1-4863-1226-9 On-line Contributors The following people contributed to this study. Affiliation is CSIRO unless otherwise stated. WAM = Western Australia Museum, MV = Museum of Victoria, DPIRD = Department of Primary Industries and Regional Development Study design and operational execution: John Keesing, Nick Mortimer, Stephen Newman (DPIRD), Roland Pitcher, Keith Sainsbury (SainsSolutions), Joanna Strzelecki, Corey Wakefield (DPIRD), John Wakeford (Fishing Untangled), Alan Williams Field work: Belinda Alvarez, Dion Boddington (DPIRD), Monika Bryce, Susan Cheers, Brett Chrisafulli (DPIRD), Frances Cooke, Frank Coman, Christopher Dowling (DPIRD), Gary Fry, Cristiano Giordani (Universidad de Antioquia, Medellín, Colombia), Alastair Graham, Mark Green, Qingxi Han (Ningbo University, China), John Keesing, Peter Karuso (Macquarie University), Matt Lansdell, Maylene Loo, Hector Lozano‐Montes, Huabin Mao (Chinese Academy of Sciences), Margaret Miller, Nick Mortimer, James McLaughlin, Amy Nau, Kate Naughton (MV), Tracee Nguyen, Camilla Novaglio, John Pogonoski, Keith Sainsbury (SainsSolutions), Craig Skepper (DPIRD), Joanna Strzelecki, Tonya Van Der Velde, Alan Williams Taxonomy and contributions to Chapter 4: Belinda Alvarez, Sharon Appleyard, Monika Bryce, Alastair Graham, Qingxi Han (Ningbo University, China), Glad Hansen (WAM), -
The Shell As a Symbolic Design Motif
THE SHELL AS A SYMBOLIC DESIGN MOTIF: RELIGIOUS SIGNIFICANCE AND USE IN SELECTED AREAS OF THE MISSION SAN XAVIER DEL BAC TUCSON, ARIZONA By LINDA ANNE TARALDSON Bachelor of Science University of Arizona Tucson, Arizona 1964 Submitted to the faculty of the Graduate College of the Oklahoma State University in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE May, 1968 ',' ,; OKLAHOMA STATE UNIVERSflY LIBRARY OCT ~ij 1968 THE SHELL AS A SYMBOLIC DESIGN MOTIF:,, ... _ RELIGIOUS SIGNIFICANCE AND USE IN SELECTED AREAS OF THE MISSION SAN XAVIER DEL BAC TUCSON, ARIZONA Thesis Approved: Dean of the Graduate College 688808 ii PREFACE The creative Interior Designer _needs to have a thorough knowledge and understanding of history and a skill in correlating authentic de sl-gns of the past with the present. Sensitivity to the art and designs of the past aids the Interior Designer in adapting them into the crea-_ tion of the contemporary interior, Des.igns of the past can have an integral relationship with contemporary design, Successful designs are those which have survived and have transcended time, Thus, the Interior Designer needs to know the background of a design, the original use of a design, and the period to which a design belongs in order to success fully adapt the design to the contemporary creation of beautyo This study of the shell as a symbolic design motif began with a profound interest in history, a deep love for a serene desert mission. and a probing curiosity concerning an outstanding design used in con -
Heavy Metals in the Antarctic Scallop Adam Ussium Colbecki
MARINE ECOLOGY PROGRESS SERIES Vol. 67: 27-33, 1990 Published September 20 Mar. Ecol. Prog. Ser. l Heavy metals in the Antarctic scallop Adam ussium colbecki Dipartirnento di Biologia Anirnale, Universita di Modena, via Universita 4,1-41100 Modena, Italy Dipartirnento di Biomedicina Sperimentale Infettiva e Pubblica, Universita di Pisa. via Volta 4.1-56100 Pisa, Italy ABSTRACT: Cu, Fe, Cr. Cd, Mn and Zn concentrations were determined in different organs of the Antarctic scallop Adarnussium colbecki (Smith) and compared with those found in Pecten jacobaeus L., a scallop of temperate waters, and wlth literature values for other Pectinidae. The digestive gland of A. colbeck, was the target organ for Cu, Fe, Cr and Cd, whereas Mn and Zn were found mainly in the kidney. Cd concentration in the digestive gland of A. colbecki was higher than that in the same organ of P. jacobaeus, indicating a marked ability of the Antarctic scallop to concentrate this metal. However, in A. colbecki renal concentrations of both Mn and Zn were considerably lower than those measured in P. lacobaeus and other Pectinidae, and may be related to the scarcity of concretions observed in its kidney. INTRODUCTION Pecten lacobaeus L., a hermaphroditic species of temperate waters, was used for comparison between Better insight into the ecology of the Antarctic is Adarnussiurn colbecki and other non-Antarctic scallops. today of great importance considering the increasing Data on heavy metal levels in other species of Pectinidae interest shown in the resources of this continent. Col- were also used for comparison with A. colbecki. lecting new environmental data will serve as the baseline for evaluating future environmental impact of pollutants in this remote area.